Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:segmentation
go back to main search page
Accession:GO:0035282 term browser browse the term
Definition:The regionalization process that divides an organism or part of an organism into a series of semi-repetitive parts, or segments, often arranged along a longitudinal axis.
Synonyms:xref: Wikipedia:Segmentation_(biology)


show annotations for term's descendants           Sort by:
 
segmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACD ACD shelterin complex subunit and telomerase recruitment factor ISO (MGI:MGI:3526782|PMID:15537664) MGI PMID:15537664 MGI:MGI:3526782 NCBI chr16:48,001,408...48,004,620
Ensembl chr16:67,390,703...67,393,685
JBrowse link
G DVL2 dishevelled segment polarity protein 2 ISO (MGI:MGI:82989|PMID:8887313) BHF-UCL PMID:8887313 MGI:MGI:82989 NCBI chr17:7,255,241...7,264,452
Ensembl chr17:7,242,493...7,251,571
JBrowse link
G PSEN1 presenilin 1 ISO (MGI:MGI:1931803|PMID:11262239)
(MGI:MGI:3587130|PMID:16079160)
MGI PMID:11262239, PMID:16079160 MGI:MGI:1931803, MGI:MGI:3587130 NCBI chr14:53,718,299...53,802,684
Ensembl chr14:72,579,024...72,663,876
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FRS2 fibroblast growth factor receptor substrate 2 ISO (MGI:MGI:3580203|PMID:15870281) MGI PMID:15870281 MGI:MGI:3580203 NCBI chr12:66,992,207...67,107,313
Ensembl chr12:69,829,435...69,878,293
JBrowse link
G FZD5 frizzled class receptor 5 ISO (PMID:9054360) BHF-UCL PMID:9054360 NCBI chr2B:95,003,246...95,010,577
Ensembl chr2B:213,133,017...213,134,774
JBrowse link
G TASOR transcription activation suppressor ISO (MGI:MGI:6109647|PMID:28839193) UniProt PMID:28839193 MGI:MGI:6109647 NCBI chr 3:56,555,945...56,619,151
Ensembl chr 3:57,771,656...57,834,077
JBrowse link
G TBX3 T-box transcription factor 3 ISO (PMID:9207801) UniProtKB PMID:9207801 NCBI chr12:112,240,050...112,254,299
Ensembl chr12:115,620,002...115,631,316
JBrowse link
G TCF7L1 transcription factor 7 like 1 ISO (MGI:MGI:3043490|PMID:14668413) MGI PMID:14668413 MGI:MGI:3043490 NCBI chr2A:85,186,660...85,363,033
Ensembl chr2A:86,739,417...86,913,905
JBrowse link
G TDGF1 teratocarcinoma-derived growth factor 1 ISO (MGI:MGI:1303194|PMID:9790191) MGI PMID:9790191 MGI:MGI:1303194 NCBI chr 3:46,473,282...46,478,454
Ensembl chr 3:47,577,949...47,583,126
JBrowse link
G WNT5A Wnt family member 5A ISO (MGI:MGI:4835157|PMID:9054360) BHF-UCL PMID:9054360 MGI:MGI:4835157 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051
JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 ISO (MGI:MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:MGI:1891551 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973
JBrowse link
G MED12 mediator complex subunit 12 ISO (MGI:MGI:4839483|PMID:20630950) MGI PMID:20630950 MGI:MGI:4839483 NCBI chr  X:60,386,820...60,410,730
Ensembl chr  X:70,443,667...70,466,942
JBrowse link
G WNT3A Wnt family member 3A ISO (MGI:MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:MGI:1891551 NCBI chr 1:203,409,294...203,463,214
Ensembl chr 1:208,628,706...208,674,469
JBrowse link
BMP signaling pathway involved in renal system segmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 ISO (MGI:MGI:3710018|PMID:17442697) UniProtKB PMID:17442697 MGI:MGI:3710018 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752
JBrowse link
brain segmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGR2 early growth response 2 ISO (MGI:MGI:64171|PMID:7903221) MGI PMID:7903221 MGI:MGI:64171 NCBI chr10:59,320,073...59,326,869
Ensembl chr10:61,648,364...61,652,846
JBrowse link
G HOXA2 homeobox A2 ISO (MGI:MGI:1098901|PMID:9367425) MGI PMID:9367425 MGI:MGI:1098901 NCBI chr 7:27,745,138...27,747,129
Ensembl chr 7:27,344,469...27,346,789
JBrowse link
G MAFB MAF bZIP transcription factor B ISO (MGI:MGI:67780|PMID:7925021) MGI PMID:7925021 MGI:MGI:67780 NCBI chr20:37,023,988...37,027,446
Ensembl chr20:38,127,722...38,128,693
JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SFRP1 secreted frizzled related protein 1 ISO (MGI:MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:MGI:3793375 NCBI chr 8:40,507,027...40,555,053 JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISO (MGI:MGI:5545944|PMID:23072809) UniProtKB PMID:23072809 MGI:MGI:5545944 NCBI chr 7:2,781,493...2,790,936 JBrowse link
G NRARP NOTCH regulated ankyrin repeat protein ISO (MGI:MGI:5317364|PMID:21795391) MGI PMID:21795391 MGI:MGI:5317364 NCBI chr 9:108,358,959...108,361,586 JBrowse link
P granule organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLD6 phospholipase D family member 6 ISO (MGI:MGI:4943609|PMID:21397848) UniProtKB PMID:21397848 MGI:MGI:4943609 NCBI chr17:34,084,634...34,091,470
Ensembl chr17:39,016,859...39,023,398
JBrowse link
G TDRD5 tudor domain containing 5 ISO (MGI:MGI:4946318|PMID:21383078) UniProtKB PMID:21383078 MGI:MGI:4946318 NCBI chr 1:155,080,083...155,171,734
Ensembl chr 1:158,761,013...158,852,660
JBrowse link
regulation of cell motility involved in somitogenic axis elongation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr 3:133,017,166...133,202,163
Ensembl chr 3:140,485,925...140,666,592
JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDX1 caudal type homeobox 1 ISO (MGI:MGI:5301472|PMID:22015720) UniProtKB PMID:22015720 MGI:MGI:5301472 NCBI chr 5:145,591,186...145,608,976
Ensembl chr 5:151,592,139...151,614,257
JBrowse link
G CDX2 caudal type homeobox 2 ISO (MGI:MGI:5301472|PMID:22015720) UniProtKB PMID:22015720 MGI:MGI:5301472 NCBI chr13:9,241,856...9,250,297
Ensembl chr13:27,586,340...27,593,632
JBrowse link
G DLL1 delta like canonical Notch ligand 1 ISO (MGI:MGI:5689216|PMID:26114479) UniProtKB PMID:26114479 MGI:MGI:5689216 NCBI chr 6:168,440,192...168,449,071
Ensembl chr 6:173,534,292...173,544,759
JBrowse link
G DMRT2 doublesex and mab-3 related transcription factor 2 ISO (MGI:MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:MGI:3820487 NCBI chr 9:860,271...867,704
Ensembl chr 9:1,055,473...1,060,962
JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISO (PMID:19061953)
(MGI:MGI:4367298|PMID:19779553)
UniProtKB
MGI
PMID:19061953, PMID:19779553 MGI:MGI:4367298 NCBI chr 7:2,781,493...2,790,936 JBrowse link
G NOTCH1 notch receptor 1 ISO (MGI:MGI:72973|PMID:7789282) MGI PMID:7789282 MGI:MGI:72973 NCBI chr 9:107,568,670...107,621,032
Ensembl chr 9:136,544,639...136,598,740
JBrowse link
G PAX3 paired box 3 ISO (MGI:MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:MGI:3820487 NCBI chr2B:109,441,938...109,541,449
Ensembl chr2B:228,022,453...228,121,874
JBrowse link
retinoic acid receptor signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 ISO (MGI:MGI:3578715|PMID:15889094) MGI PMID:15889094 MGI:MGI:3578715 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168
JBrowse link
segment specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DVL2 dishevelled segment polarity protein 2 ISO (MGI:MGI:2389015|PMID:12421720) MGI PMID:12421720 MGI:MGI:2389015 NCBI chr17:7,255,241...7,264,452
Ensembl chr17:7,242,493...7,251,571
JBrowse link
G HOXA2 homeobox A2 ISO (MGI:MGI:1098901|PMID:9367425) MGI PMID:9367425 MGI:MGI:1098901 NCBI chr 7:27,745,138...27,747,129
Ensembl chr 7:27,344,469...27,346,789
JBrowse link
G MAFB MAF bZIP transcription factor B ISO (MGI:MGI:2660991|PMID:12701106) MGI PMID:12701106 MGI:MGI:2660991 NCBI chr20:37,023,988...37,027,446
Ensembl chr20:38,127,722...38,128,693
JBrowse link
G MLLT3 MLLT3 super elongation complex subunit ISO (MGI:MGI:2387913|PMID:12242306) MGI PMID:12242306 MGI:MGI:2387913 NCBI chr 9:20,140,160...20,417,327
Ensembl chr 9:20,800,393...21,073,046
JBrowse link
G MSGN1 mesogenin 1 ISO (MGI:MGI:1928575|PMID:11124811) MGI PMID:11124811 MGI:MGI:1928575 NCBI chr2A:17,797,769...17,799,243
Ensembl chr2A:17,926,027...17,926,608
JBrowse link
G MTF2 metal response element binding transcription factor 2 ISO (MGI:MGI:4946172|PMID:21059868) UniProtKB PMID:21059868 MGI:MGI:4946172 NCBI chr 1:95,748,829...95,808,557
Ensembl chr 1:94,481,877...94,541,506
JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 ISO (MGI:MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:MGI:3821807 NCBI chr2B:6,945,289...7,111,595
Ensembl chr2B:120,521,145...120,687,209
JBrowse link
G FOXA2 forkhead box A2 ISO (MGI:MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:MGI:2157654 NCBI chr20:22,519,942...22,524,262 JBrowse link
G GDF3 growth differentiation factor 3 ISO (MGI:MGI:3611720|PMID:16368929) MGI PMID:16368929 MGI:MGI:3611720 NCBI chr12:7,813,288...7,819,418
Ensembl chr12:7,972,907...7,979,815
JBrowse link
G KDM6A lysine demethylase 6A ISO (MGI:MGI:5448135|PMID:22949634) MGI PMID:22949634 MGI:MGI:5448135 NCBI chr  X:37,313,000...37,548,630
Ensembl chr  X:45,127,382...45,362,029
JBrowse link
G LHX1 LIM homeobox 1 ISO (MGI:MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:MGI:2157654 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751
JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 ISO (MGI:MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:MGI:4459001 NCBI chr15:68,470,528...68,473,209 JBrowse link
G NRARP NOTCH regulated ankyrin repeat protein ISO (MGI:MGI:5438472|PMID:21998026) MGI PMID:21998026 MGI:MGI:5438472 NCBI chr 9:108,358,959...108,361,586 JBrowse link
G OTX2 orthodenticle homeobox 2 ISO (MGI:MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:MGI:2157654 NCBI chr14:37,370,926...37,381,610
Ensembl chr14:55,641,349...55,651,012
JBrowse link
G RIPPLY1 ripply transcriptional repressor 1 ISO (MGI:MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:MGI:4459001 NCBI chr  X:95,998,718...96,003,843
Ensembl chr  X:106,377,932...106,381,193
JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 ISO (MGI:MGI:3613215|PMID:16326386)
(MGI:MGI:4459001|PMID:20346937)
UniProtKB
MGI
PMID:16326386, PMID:20346937 MGI:MGI:3613215, MGI:MGI:4459001 NCBI chr 6:81,748,370...81,754,129
Ensembl chr 6:85,022,737...85,027,930
JBrowse link
G SMAD4 SMAD family member 4 ISO (MGI:MGI:1195384|PMID:9420335) MGI PMID:9420335 MGI:MGI:1195384 NCBI chr18:44,402,112...44,456,779
Ensembl chr18:47,764,568...47,797,359
JBrowse link
G TBX6 T-box transcription factor 6 ISO (MGI:MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:MGI:4459001 Ensembl chr16:30,460,305...30,467,070 JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 ISO (MGI:MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:MGI:4453264 NCBI chr12:121,169,915...121,183,524
Ensembl chr12:125,397,391...125,410,794
JBrowse link
somite specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COBL cordon-bleu WH2 repeat protein ISO (PMID:7586755) BHF-UCL PMID:7586755 NCBI chr 7:51,652,318...51,952,256
Ensembl chr 7:51,895,807...52,097,841
JBrowse link
G DLL1 delta like canonical Notch ligand 1 ISO (MGI:MGI:3034157|PMID:14960495) MGI PMID:14960495 MGI:MGI:3034157 NCBI chr 6:168,440,192...168,449,071
Ensembl chr 6:173,534,292...173,544,759
JBrowse link
G MEOX1 mesenchyme homeobox 1 ISO (MGI:MGI:2669571|PMID:12925591) MGI PMID:12925591 MGI:MGI:2669571 NCBI chr17:13,733,235...13,756,584
Ensembl chr17:13,982,668...14,003,820
JBrowse link
G MEOX2 mesenchyme homeobox 2 ISO (MGI:MGI:2669571|PMID:12925591) MGI PMID:12925591 MGI:MGI:2669571 NCBI chr 7:16,268,225...16,343,914
Ensembl chr 7:15,598,466...15,673,935
JBrowse link
somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI1 abl interactor 1 ISO (MGI:MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:MGI:3577662 NCBI chr10:26,863,648...26,975,376
Ensembl chr10:27,227,960...27,339,434
JBrowse link
G ATM ATM serine/threonine kinase ISO (MGI:MGI:3624894|PMID:16687486) MGI PMID:16687486 MGI:MGI:3624894 NCBI chr11:103,109,979...103,256,405
Ensembl chr11:106,584,228...106,727,041
JBrowse link
G AXIN2 axin 2 ISO (MGI:MGI:3037351|PMID:12636920) MGI PMID:12636920 MGI:MGI:3037351 NCBI chr17:59,476,336...59,509,358
Ensembl chr17:64,688,416...64,720,086
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A ISO (MGI:MGI:3702797|PMID:16943278) MGI PMID:16943278 MGI:MGI:3702797 NCBI chr10:83,185,040...83,353,239
Ensembl chr10:86,837,469...86,912,912
JBrowse link
G CRB2 crumbs cell polarity complex component 2 ISO (MGI:MGI:5296388|PMID:22072575) UniProtKB PMID:22072575 MGI:MGI:5296388 NCBI chr 9:94,473,423...94,511,285
Ensembl chr 9:123,011,968...123,032,855
JBrowse link
G DLL1 delta like canonical Notch ligand 1 ISO (MGI:MGI:5545944|PMID:23072809)
(MGI:MGI:3578712|PMID:15902259)
UniProtKB
MGI
PMID:15902259, PMID:23072809 MGI:MGI:3578712, MGI:MGI:5545944 NCBI chr 6:168,440,192...168,449,071
Ensembl chr 6:173,534,292...173,544,759
JBrowse link
G DLL3 delta like canonical Notch ligand 3 ISO (MGI:MGI:1095777|PMID:9272948)
(MGI:MGI:3620337|PMID:15170697)
MGI PMID:9272948, PMID:15170697 MGI:MGI:1095777, MGI:MGI:3620337 NCBI chr19:36,597,420...36,607,021 JBrowse link
G EP300 E1A binding protein p300 ISO (MGI:MGI:3583034|PMID:15937931) MGI PMID:15937931 MGI:MGI:3583034 NCBI chr22:21,986,467...22,076,921
Ensembl chr22:40,079,503...40,168,604
JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 ISO (MGI:MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:MGI:3821807 NCBI chr2B:6,945,289...7,111,595
Ensembl chr2B:120,521,145...120,687,209
JBrowse link
G FOXB1 forkhead box B1 ISO (MGI:MGI:3771770|PMID:18064677) UniProtKB PMID:18064677 MGI:MGI:3771770 NCBI chr15:38,979,727...38,983,040
Ensembl chr15:57,284,077...57,285,054
JBrowse link
G FOXC1 forkhead box C1 ISO (MGI:MGI:2150572|PMID:11562355) UniProtKB PMID:11562355 MGI:MGI:2150572 NCBI chr 6:1,429,051...1,433,180 JBrowse link
G FOXC2 forkhead box C2 ISO (MGI:MGI:2150572|PMID:11562355) UniProtKB PMID:11562355 MGI:MGI:2150572 NCBI chr16:67,237,476...67,239,545 JBrowse link
G FOXF1 forkhead box F1 ISO (MGI:MGI:1928688|PMID:11124112) MGI PMID:11124112 MGI:MGI:1928688 NCBI chr16:67,183,416...67,188,211
Ensembl chr16:86,516,119...86,519,949
JBrowse link
G HES7 hes family bHLH transcription factor 7 ISO (MGI:MGI:2152470|PMID:11641270), (MGI:MGI:4367298|PMID:19779553)
(MGI:MGI:3046002|PMID:15170214)
MGI PMID:11641270, PMID:15170214, PMID:19779553 MGI:MGI:2152470, MGI:MGI:3046002, MGI:MGI:4367298 NCBI chr17:43,530,919...43,537,999 JBrowse link
G KAT2A lysine acetyltransferase 2A ISO (MGI:MGI:3583034|PMID:15937931)
(MGI:MGI:3709911|PMID:17325035)
MGI PMID:15937931, PMID:17325035 MGI:MGI:3583034, MGI:MGI:3709911 NCBI chr17:15,194,414...15,202,818
Ensembl chr17:15,416,075...15,424,197
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 ISO (MGI:MGI:3510574|PMID:15545629)
(MGI:MGI:1334099|PMID:10090727)
MGI PMID:10090727, PMID:15545629 MGI:MGI:1334099, MGI:MGI:3510574 NCBI chr 4:100,552,959...100,674,156
Ensembl chr 4:111,125,312...111,245,980
JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISO (MGI:MGI:5545944|PMID:23072809)
(MGI:MGI:3774705|PMID:18234727)
UniProtKB
MGI
PMID:18234727, PMID:23072809 MGI:MGI:3774705, MGI:MGI:5545944 NCBI chr 7:2,781,493...2,790,936 JBrowse link
G LOC100970132 interferon-induced transmembrane protein 1 ISO (MGI:MGI:3578569|PMID:15857914) MGI PMID:15857914 MGI:MGI:3578569 Ensembl chr11:353,236...354,986 JBrowse link
G LRP6 LDL receptor related protein 6 ISO (MGI:MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:MGI:4413372 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973
JBrowse link
G MED12 mediator complex subunit 12 ISO (MGI:MGI:4839544|PMID:20589884) MGI PMID:20589884 MGI:MGI:4839544 NCBI chr  X:60,386,820...60,410,730
Ensembl chr  X:70,443,667...70,466,942
JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 ISO (MGI:MGI:3578712|PMID:15902259) MGI PMID:15902259 MGI:MGI:3578712 NCBI chr15:68,470,528...68,473,209 JBrowse link
G MIB1 mindbomb E3 ubiquitin protein ligase 1 ISO (MGI:MGI:3603078|PMID:16000382) MGI PMID:16000382 MGI:MGI:3603078 NCBI chr18:14,944,432...15,113,313
Ensembl chr18:18,641,135...18,740,813
JBrowse link
G MSGN1 mesogenin 1 ISO (MGI:MGI:1928575|PMID:11124811), (MGI:MGI:5545970|PMID:21750544) MGI PMID:11124811, PMID:21750544 MGI:MGI:1928575, MGI:MGI:5545970 NCBI chr2A:17,797,769...17,799,243
Ensembl chr2A:17,926,027...17,926,608
JBrowse link
G MYF5 myogenic factor 5 ISO (MGI:MGI:3849775|PMID:19531352)
(MGI:MGI:1861090|PMID:10929709)
(MGI:MGI:78390|PMID:8565825)
MGI PMID:8565825, PMID:10929709, PMID:19531352 MGI:MGI:1861090, MGI:MGI:3849775, MGI:MGI:78390 NCBI chr12:78,236,945...78,239,701
Ensembl chr12:81,347,324...81,350,389
JBrowse link
G MYF6 myogenic factor 6 ISO (MGI:MGI:76810|PMID:7588068) MGI PMID:7588068 MGI:MGI:76810 NCBI chr12:78,226,562...78,229,470
Ensembl chr12:81,338,339...81,340,176
JBrowse link
G NCKAP1 NCK associated protein 1 ISO (MGI:MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:MGI:3701029 NCBI chr2B:70,193,950...70,308,442
Ensembl chr2B:188,003,235...188,116,710
JBrowse link
G NKX3-1 NK3 homeobox 1 ISO (PMID:9621431) BHF-UCL PMID:9621431 NCBI chr 8:22,926,145...22,930,396
Ensembl chr 8:19,863,275...19,864,942
JBrowse link
G NLE1 notchless homolog 1 ISO (MGI:MGI:5608942|PMID:24875805) MGI PMID:24875805 MGI:MGI:5608942 NCBI chr17:21,643,865...21,654,169
Ensembl chr17:21,935,800...21,946,049
JBrowse link
G PALB2 partner and localizer of BRCA2 ISO (MGI:MGI:4459579|PMID:20484223) MGI PMID:20484223 MGI:MGI:4459579 NCBI chr16:14,470,367...14,507,841
Ensembl chr16:23,855,535...23,892,117
JBrowse link
G PAX1 paired box 1 ISO (MGI:MGI:3590033|PMID:16093716) MGI PMID:16093716 MGI:MGI:3590033 NCBI chr20:21,663,155...21,676,880 JBrowse link
G PCDH8 protocadherin 8 ISO (MGI:MGI:2451199|PMID:12591245) MGI PMID:12591245 MGI:MGI:2451199 NCBI chr13:33,880,543...33,886,243
Ensembl chr13:52,688,522...52,692,399
JBrowse link
G PLXNA2 plexin A2 ISO (PMID:19666519) BHF-UCL PMID:19666519 NCBI chr 1:183,600,533...183,848,418
Ensembl chr 1:188,408,048...188,603,208
JBrowse link
G POFUT1 protein O-fucosyltransferase 1 ISO (MGI:MGI:2660984|PMID:12697902) MGI PMID:12697902 MGI:MGI:2660984 NCBI chr20:28,496,987...28,527,817
Ensembl chr20:29,625,481...29,655,722
JBrowse link
G POGLUT1 protein O-glucosyltransferase 1 ISO (MGI:MGI:1267118|PMID:9636176) MGI PMID:9636176 MGI:MGI:1267118 NCBI chr 3:116,591,271...116,617,382
Ensembl chr 3:123,503,899...123,529,919
JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit ISO (MGI:MGI:3624894|PMID:16687486) MGI PMID:16687486 MGI:MGI:3624894 NCBI chr 8:44,201,391...44,386,803
Ensembl chr 8:41,593,029...41,778,299
JBrowse link
G PSEN1 presenilin 1 ISO (MGI:MGI:1347695|PMID:10557208), (MGI:MGI:4367298|PMID:19779553)
(MGI:MGI:87649|PMID:9153393)
MGI PMID:9153393, PMID:10557208, PMID:19779553 MGI:MGI:1347695, MGI:MGI:4367298, MGI:MGI:87649 NCBI chr14:53,718,299...53,802,684
Ensembl chr14:72,579,024...72,663,876
JBrowse link
G PSEN2 presenilin 2 ISO (MGI:MGI:1347695|PMID:10557208), (MGI:MGI:4367298|PMID:19779553) MGI PMID:10557208, PMID:19779553 MGI:MGI:1347695, MGI:MGI:4367298 NCBI chr 1:202,328,987...202,354,440
Ensembl chr 1:207,320,937...207,346,295
JBrowse link
G RBPJ recombination signal binding protein for immunoglobulin kappa J region ISO (MGI:MGI:4367298|PMID:19779553) MGI PMID:19779553 MGI:MGI:4367298 NCBI chr 4:20,719,548...20,835,439
Ensembl chr 4:25,995,263...26,107,683
JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 ISO (MGI:MGI:3613215|PMID:16326386)
(MGI:MGI:3715395|PMID:17531978)
UniProtKB
MGI
PMID:16326386, PMID:17531978 MGI:MGI:3613215, MGI:MGI:3715395 NCBI chr 6:81,748,370...81,754,129
Ensembl chr 6:85,022,737...85,027,930
JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 ISO (MGI:MGI:3037488|PMID:14745966) MGI PMID:14745966 MGI:MGI:3037488 NCBI chr 9:62,782,183...63,005,626
Ensembl chr 9:90,851,983...90,965,084
JBrowse link
G SEMA3C semaphorin 3C ISO (PMID:19666519) BHF-UCL PMID:19666519 NCBI chr 7:72,706,615...72,884,163
Ensembl chr 7:86,368,753...86,545,580
JBrowse link
G SFRP1 secreted frizzled related protein 1 ISO (PMID:10654605)
(MGI:MGI:3618960|PMID:16467359)
BHF-UCL
MGI
PMID:10654605, PMID:16467359 MGI:MGI:3618960 NCBI chr 8:40,507,027...40,555,053 JBrowse link
G SFRP2 secreted frizzled related protein 2 ISO (MGI:MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:MGI:3618960 NCBI chr 4:146,123,075...146,131,543
Ensembl chr 4:157,944,733...157,953,258
JBrowse link
G SMAD3 SMAD family member 3 ISO (MGI:MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:MGI:3618021 NCBI chr15:46,013,764...46,143,126
Ensembl chr15:64,284,949...64,414,185
JBrowse link
G TBX18 T-box transcription factor 18 ISO (MGI:MGI:3044041|PMID:15155583) MGI PMID:15155583 MGI:MGI:3044041 NCBI chr 6:82,621,987...82,654,137
Ensembl chr 6:85,862,810...85,938,799
JBrowse link
G TBXT T-box transcription factor T ISO (MGI:MGI:64493|PMID:8293872)
(MGI:MGI:3056222|PMID:15384171)
(MGI:MGI:3701028|PMID:16835439)
MGI PMID:8293872, PMID:15384171, PMID:16835439 MGI:MGI:3056222, MGI:MGI:3701028, MGI:MGI:64493 NCBI chr 6:164,112,117...164,122,253
Ensembl chr 6:169,095,723...169,106,595
JBrowse link
G TCAP titin-cap ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chr17:17,622,318...17,625,252
Ensembl chr17:17,839,139...17,842,727
JBrowse link
G TCF15 transcription factor 15 ISO (MGI:MGI:84545|PMID:8955271) MGI PMID:8955271 MGI:MGI:84545 NCBI chr20:811,907...817,971 JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 ISO (MGI:MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:MGI:4453264 NCBI chr12:121,169,915...121,183,524
Ensembl chr12:125,397,391...125,410,794
JBrowse link
G TP53 tumor protein p53 ISO (MGI:MGI:3709913|PMID:17320900) MGI PMID:17320900 MGI:MGI:3709913 NCBI chr17:7,699,449...7,717,812
Ensembl chr17:7,684,922...7,706,120
JBrowse link
G TTN titin ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chr2B:65,783,512...66,064,618 JBrowse link
G WNT3A Wnt family member 3A ISO (MGI:MGI:3037351|PMID:12636920)
(MGI:MGI:3611726|PMID:16291790), (MGI:MGI:64780|PMID:8299937)
MGI PMID:8299937, PMID:12636920, PMID:16291790 MGI:MGI:3037351, MGI:MGI:3611726, MGI:MGI:64780 NCBI chr 1:203,409,294...203,463,214
Ensembl chr 1:208,628,706...208,674,469
JBrowse link
G WNT5A Wnt family member 5A ISO (MGI:MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:MGI:4413372 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051
JBrowse link
G XRCC2 X-ray repair cross complementing 2 ISO (MGI:MGI:3708426|PMID:17116431) MGI PMID:17116431 MGI:MGI:3708426 NCBI chr 7:144,229,031...144,256,854
Ensembl chr 7:156,378,685...156,406,516
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 ISO (MGI:MGI:3590396|PMID:16157277), (MGI:MGI:3624924|PMID:16598713) MGI PMID:16157277, PMID:16598713 MGI:MGI:3590396, MGI:MGI:3624924 NCBI chr2B:15,325,094...15,460,908
Ensembl chr2B:148,460,904...148,596,500
JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 ISO (MGI:MGI:3697513|PMID:16790474) UniProtKB PMID:16790474 MGI:MGI:3697513 NCBI chr2A:19,333,101...19,340,267
Ensembl chr2A:19,451,067...19,458,229
JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HES5 hes family bHLH transcription factor 5 ISO (PMID:15821257) UniProtKB PMID:15821257 NCBI chr 1:1,261,260...1,263,128 JBrowse link
G IRX1 iroquois homeobox 1 ISO (PMID:17875669) UniProtKB PMID:17875669 NCBI chr 5:3,922,252...3,927,836
Ensembl chr 5:3,610,225...3,615,279
JBrowse link
G IRX2 iroquois homeobox 2 ISO (PMID:17875669) UniProtKB PMID:17875669 NCBI chr 5:3,081,361...3,087,014 JBrowse link
G IRX3 iroquois homeobox 3 ISO (PMID:17875669) UniProtKB PMID:17875669 NCBI chr16:34,514,107...34,517,576
Ensembl chr16:53,622,409...53,624,653
JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 ISO (MGI:MGI:3697513|PMID:16790474) UniProtKB PMID:16790474 MGI:MGI:3697513 NCBI chr2A:19,333,101...19,340,267
Ensembl chr2A:19,451,067...19,458,229
JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCANP1 dendritic cell associated nuclear protein ISO (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:130,838,844...130,839,588
Ensembl chr 5:136,979,950...136,980,694
JBrowse link
G NEUROG1 neurogenin 1 ISO (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:130,922,727...130,924,403
Ensembl chr 5:137,064,339...137,065,052
JBrowse link
G TIFAB TIFA inhibitor ISO (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:130,836,697...130,846,050
Ensembl chr 5:136,983,040...136,983,525
JBrowse link
G WT1 WT1 transcription factor ISO (MGI:MGI:62488|PMID:8395349) UniProtKB PMID:8395349 MGI:MGI:62488 NCBI chr11:32,349,807...32,398,494 JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NRP1 neuropilin 1 ISO (MGI:MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:MGI:3848580 NCBI chr10:33,298,918...33,456,466
Ensembl chr10:33,883,173...34,039,648
JBrowse link
G NRP2 neuropilin 2 ISO (MGI:MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:MGI:3848580 NCBI chr2B:92,911,721...93,027,032
Ensembl chr2B:211,042,324...211,157,547
JBrowse link
G SEMA3A semaphorin 3A ISO (MGI:MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:MGI:3848580 NCBI chr 7:75,929,699...76,484,246
Ensembl chr 7:89,590,359...90,004,122
JBrowse link
G SEMA3F semaphorin 3F ISO (MGI:MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:MGI:3848580 NCBI chr 3:50,083,733...50,117,518
Ensembl chr 3:51,318,089...51,351,958
JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 ISO (MGI:MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:MGI:3793375 NCBI chr10:48,950,704...48,953,815
Ensembl chr10:51,084,027...51,089,776
JBrowse link
G LRP6 LDL receptor related protein 6 ISO (MGI:MGI:3055483|PMID:15469977) MGI PMID:15469977 MGI:MGI:3055483 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973
JBrowse link
G SFRP1 secreted frizzled related protein 1 ISO (MGI:MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:MGI:3793375 NCBI chr 8:40,507,027...40,555,053 JBrowse link
G SFRP2 secreted frizzled related protein 2 ISO (MGI:MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:MGI:3793375 NCBI chr 4:146,123,075...146,131,543
Ensembl chr 4:157,944,733...157,953,258
JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NCKAP1 NCK associated protein 1 ISO (MGI:MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:MGI:3701029 NCBI chr2B:70,193,950...70,308,442
Ensembl chr2B:188,003,235...188,116,710
JBrowse link
G PCSK6 proprotein convertase subtilisin/kexin type 6 ISO (MGI:MGI:1858546|PMID:10809672) MGI PMID:10809672 MGI:MGI:1858546 NCBI chr15:80,029,225...80,226,027
Ensembl chr15:99,312,512...99,460,444
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12529
    multicellular organismal process 6476
      pattern specification process 455
        regionalization 367
          segmentation 105
            appendage segmentation + 0
            blastoderm segmentation + 19
            brain segmentation 3
            central nervous system segmentation + 3
            renal system segmentation + 1
            segment specification + 15
            somitogenesis + 75
            trunk segmentation + 4
Path 2
Term Annotations click to browse term
  biological_process 12529
    developmental process 5818
      anatomical structure development 5431
        multicellular organism development 4970
          pattern specification process 455
            regionalization 367
              segmentation 105
                appendage segmentation + 0
                blastoderm segmentation + 19
                brain segmentation 3
                central nervous system segmentation + 3
                renal system segmentation + 1
                segment specification + 15
                somitogenesis + 75
                trunk segmentation + 4
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.