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ONTOLOGY REPORT - ANNOTATIONS


Term:segmentation
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Accession:GO:0035282 term browser browse the term
Definition:The regionalization process that divides an organism or part of an organism into a series of semi-repetitive parts, or segments, often arranged along a longitudinal axis.
Synonyms:xref: Wikipedia:Segmentation_(biology)


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segmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACD ACD shelterin complex subunit and telomerase recruitment factor IEA Ensembl GO_REF:0000107 NCBI chr 5:81,789,915...81,792,725
Ensembl chr 5:81,789,997...81,792,639
JBrowse link
G DVL2 dishevelled segment polarity protein 2 ISO (MGI:MGI:82989|PMID:8887313) BHF-UCL PMID:8887313 MGI:MGI:82989 NCBI chr 5:32,194,326...32,201,922
Ensembl chr 5:32,194,313...32,201,857
JBrowse link
G PSEN1 presenilin 1 ISO (MGI:MGI:3587130|PMID:16079160)
(MGI:MGI:1931803|PMID:11262239)
MGI PMID:11262239, PMID:16079160 MGI:MGI:1931803, MGI:MGI:3587130 NCBI chr 8:46,495,551...46,569,532
Ensembl chr 8:46,495,624...46,569,532
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FRS2 fibroblast growth factor receptor substrate 2 IEA Ensembl GO_REF:0000107 NCBI chr10:11,445,843...11,552,325
Ensembl chr10:11,539,994...11,552,890
JBrowse link
G FZD5 frizzled class receptor 5 IEA Ensembl GO_REF:0000107 NCBI chr37:16,123,788...16,126,634
Ensembl chr37:16,123,798...16,125,567
JBrowse link
G TASOR transcription activation suppressor IEA Ensembl GO_REF:0000107 NCBI chr20:33,665,231...33,713,264
Ensembl chr20:33,646,000...33,712,936
JBrowse link
G TBX3 T-box transcription factor 3 IEA Ensembl GO_REF:0000107 NCBI chr26:11,694,885...11,709,594
Ensembl chr26:11,696,565...11,708,918
JBrowse link
G TCF7L1 transcription factor 7 like 1 ISO (MGI:MGI:3043490|PMID:14668413) MGI PMID:14668413 MGI:MGI:3043490 NCBI chr17:39,699,958...39,859,167
Ensembl chr17:39,699,958...39,858,182
JBrowse link
G TDGF1 teratocarcinoma-derived growth factor 1 ISO (MGI:MGI:1303194|PMID:9790191) MGI PMID:9790191 MGI:MGI:1303194 NCBI chr20:42,137,939...42,140,590 JBrowse link
G WNT5A Wnt family member 5A IEA Ensembl GO_REF:0000107 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
JBrowse link
G MED12 mediator complex subunit 12 IEA Ensembl GO_REF:0000107 NCBI chr  X:55,487,629...55,508,941
Ensembl chr  X:55,482,013...55,509,992
JBrowse link
G WNT3A Wnt family member 3A IEA Ensembl GO_REF:0000107 NCBI chr14:864,393...899,698
Ensembl chr14:863,424...896,412
JBrowse link
BMP signaling pathway involved in renal system segmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 IEA Ensembl GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
brain segmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGR2 early growth response 2 IEA Ensembl GO_REF:0000107 NCBI chr 4:14,705,384...14,810,130
Ensembl chr 4:14,706,600...14,709,497
JBrowse link
G HOXA2 homeobox A2 IEA Ensembl GO_REF:0000107 NCBI chr14:40,273,992...40,276,975
Ensembl chr14:40,274,469...40,276,239
JBrowse link
G MAFB MAF bZIP transcription factor B ISO (MGI:MGI:67780|PMID:7925021) MGI PMID:7925021 MGI:MGI:67780 NCBI chr24:28,769,904...28,772,519
Ensembl chr24:28,770,944...28,774,948
JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SFRP1 secreted frizzled related protein 1 ISO (MGI:MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:MGI:3793375 NCBI chr16:24,262,451...24,306,162
Ensembl chr16:24,261,946...24,302,964
JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase IEA Ensembl GO_REF:0000107 NCBI chr 6:14,631,638...14,640,147
Ensembl chr 6:14,632,691...14,635,485
JBrowse link
G NRARP NOTCH regulated ankyrin repeat protein IEA Ensembl GO_REF:0000107 NCBI chr 9:48,394,568...48,396,849
Ensembl chr 9:48,394,754...48,395,098
JBrowse link
P granule organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLD6 phospholipase D family member 6 ISS
IEA
UniProtKB
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 5:42,208,594...42,212,403
Ensembl chr 5:42,208,609...42,210,796
JBrowse link
G TDRD5 tudor domain containing 5 IEA
ISS
Ensembl
UniProtKB
GO_REF:0000024, GO_REF:0000107 NCBI chr 7:20,259,940...20,348,014
Ensembl chr 7:20,261,630...20,348,650
JBrowse link
regulation of cell motility involved in somitogenic axis elongation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr23:32,441,130...32,628,588
Ensembl chr23:32,471,921...32,626,548
JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDX1 caudal type homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:58,897,914...58,915,573
Ensembl chr 4:58,897,877...58,915,776
JBrowse link
G CDX2 caudal type homeobox 2 IEA Ensembl GO_REF:0000107 NCBI chr25:11,701,134...11,707,883
Ensembl chr25:11,700,779...11,707,127
JBrowse link
G DLL1 delta like canonical Notch ligand 1 IEA Ensembl GO_REF:0000107 NCBI chr12:72,265,078...72,272,347
Ensembl chr12:72,265,682...72,272,348
JBrowse link
G DMRT2 doublesex and mab-3 related transcription factor 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:89,873,380...89,880,944
Ensembl chr 1:89,875,670...89,880,641
JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISO (PMID:19061953)
(MGI:MGI:4367298|PMID:19779553)
UniProtKB
MGI
PMID:19061953, PMID:19779553 MGI:MGI:4367298 NCBI chr 6:14,631,638...14,640,147
Ensembl chr 6:14,632,691...14,635,485
JBrowse link
G NOTCH1 notch receptor 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277
JBrowse link
G PAX3 paired box 3 ISO (MGI:MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:MGI:3820487 NCBI chr37:28,346,476...28,443,648
Ensembl chr37:28,346,563...28,444,561
JBrowse link
retinoic acid receptor signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 IEA Ensembl GO_REF:0000107 NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030
JBrowse link
segment specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DVL2 dishevelled segment polarity protein 2 IEA Ensembl GO_REF:0000107 NCBI chr 5:32,194,326...32,201,922
Ensembl chr 5:32,194,313...32,201,857
JBrowse link
G HOXA2 homeobox A2 IEA Ensembl GO_REF:0000107 NCBI chr14:40,273,992...40,276,975
Ensembl chr14:40,274,469...40,276,239
JBrowse link
G MAFB MAF bZIP transcription factor B ISO (MGI:MGI:2660991|PMID:12701106) MGI PMID:12701106 MGI:MGI:2660991 NCBI chr24:28,769,904...28,772,519
Ensembl chr24:28,770,944...28,774,948
JBrowse link
G MLLT3 MLLT3 super elongation complex subunit IEA Ensembl GO_REF:0000107 NCBI chr11:39,923,165...40,203,574
Ensembl chr11:39,927,517...40,203,281
JBrowse link
G MSGN1 mesogenin 1 IEA Ensembl GO_REF:0000107 NCBI chr17:13,266,674...13,267,968
Ensembl chr17:13,266,674...13,267,240
JBrowse link
G MTF2 metal response element binding transcription factor 2 IEA Ensembl GO_REF:0000107 NCBI chr 6:55,950,814...56,010,935
Ensembl chr 6:55,951,279...56,010,886
JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 IEA Ensembl GO_REF:0000107 NCBI chr19:29,916,994...30,063,243
Ensembl chr19:29,921,636...30,063,216
JBrowse link
G FOXA2 forkhead box A2 ISO (MGI:MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:MGI:2157654 NCBI chr24:1,010,370...1,013,791
Ensembl chr24:1,010,651...1,013,072
JBrowse link
G GDF3 growth differentiation factor 3 IEA Ensembl GO_REF:0000107 NCBI chr27:37,125,845...37,129,567
Ensembl chr27:37,125,928...37,129,484
JBrowse link
G KDM6A lysine demethylase 6A ISO (MGI:MGI:5448135|PMID:22949634) MGI PMID:22949634 MGI:MGI:5448135 NCBI chr  X:38,745,854...38,964,029
Ensembl chr  X:38,745,854...38,959,842
JBrowse link
G LHX1 LIM homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:36,760,890...36,768,345
Ensembl chr 9:36,761,826...36,768,164
JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:52,738,333...52,739,962
Ensembl chr 3:52,738,366...52,739,755
JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:52,757,581...52,759,987
Ensembl chr 3:52,756,836...52,760,004
JBrowse link
G NRARP NOTCH regulated ankyrin repeat protein IEA Ensembl GO_REF:0000107 NCBI chr 9:48,394,568...48,396,849
Ensembl chr 9:48,394,754...48,395,098
JBrowse link
G OTX2 orthodenticle homeobox 2 ISO (MGI:MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:MGI:2157654 NCBI chr 8:32,435,169...32,445,093
Ensembl chr 8:32,435,863...32,445,446
JBrowse link
G RIPPLY1 ripply transcriptional repressor 1 ISO (MGI:MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:MGI:4459001 NCBI chr  X:80,457,529...80,461,281
Ensembl chr  X:80,457,912...80,460,765
JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 ISO (MGI:MGI:3613215|PMID:16326386)
(MGI:MGI:4459001|PMID:20346937)
UniProtKB
MGI
PMID:16326386, PMID:20346937 MGI:MGI:3613215, MGI:MGI:4459001 NCBI chr12:44,144,821...44,168,236 JBrowse link
G SMAD4 SMAD family member 4 IEA Ensembl GO_REF:0000107 NCBI chr 1:23,875,989...23,930,027
Ensembl chr 1:23,882,139...23,969,405
JBrowse link
G TBX6 T-box transcription factor 6 IEA Ensembl GO_REF:0000107 NCBI chr 6:18,093,201...18,098,592
Ensembl chr 6:18,093,189...18,097,636
JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 IEA Ensembl GO_REF:0000107 NCBI chr26:6,039,046...6,047,490
Ensembl chr26:6,039,405...6,047,459
JBrowse link
somite specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COBL cordon-bleu WH2 repeat protein IEA Ensembl GO_REF:0000107 NCBI chr18:2,206,957...2,386,333
Ensembl chr18:2,208,260...2,459,206
JBrowse link
G DLL1 delta like canonical Notch ligand 1 IEA Ensembl GO_REF:0000107 NCBI chr12:72,265,078...72,272,347
Ensembl chr12:72,265,682...72,272,348
JBrowse link
G MEOX1 mesenchyme homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:19,614,568...19,641,426
Ensembl chr 9:19,614,503...19,640,908
JBrowse link
G MEOX2 mesenchyme homeobox 2 ISO (MGI:MGI:2669571|PMID:12925591) MGI PMID:12925591 MGI:MGI:2669571 NCBI chr14:30,258,737...30,324,438
Ensembl chr14:29,864,318...30,324,006
JBrowse link
somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI1 abl interactor 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:6,941,752...7,059,466
Ensembl chr 2:6,941,900...7,057,684
JBrowse link
G ATM ATM serine/threonine kinase IEA Ensembl GO_REF:0000107 NCBI chr 5:24,180,129...24,297,207
Ensembl chr 5:24,182,135...24,297,207
JBrowse link
G AXIN2 axin 2 IEA Ensembl GO_REF:0000107 NCBI chr 9:14,559,476...14,588,950
Ensembl chr 9:14,559,388...14,588,530
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A IEA Ensembl GO_REF:0000107 NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923
JBrowse link
G CRB2 crumbs cell polarity complex component 2 IEA Ensembl GO_REF:0000107 NCBI chr 9:59,427,661...59,450,436
Ensembl chr 9:59,427,569...59,450,434
JBrowse link
G DLL1 delta like canonical Notch ligand 1 ISO (MGI:MGI:5545944|PMID:23072809)
(MGI:MGI:3578712|PMID:15902259)
UniProtKB
MGI
PMID:15902259, PMID:23072809 MGI:MGI:3578712, MGI:MGI:5545944 NCBI chr12:72,265,078...72,272,347
Ensembl chr12:72,265,682...72,272,348
JBrowse link
G DLL3 delta like canonical Notch ligand 3 ISO (MGI:MGI:1095777|PMID:9272948)
(MGI:MGI:3620337|PMID:15170697)
MGI PMID:9272948, PMID:15170697 MGI:MGI:1095777, MGI:MGI:3620337 NCBI chr 1:113,737,662...113,745,936 JBrowse link
G EP300 E1A binding protein p300 IEA Ensembl GO_REF:0000107 NCBI chr10:24,076,538...24,156,708
Ensembl chr10:24,077,971...24,156,396
JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 ISO (MGI:MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:MGI:3821807 NCBI chr19:29,916,994...30,063,243
Ensembl chr19:29,921,636...30,063,216
JBrowse link
G FOXB1 forkhead box B1 IEA Ensembl GO_REF:0000107 NCBI chr30:24,822,137...24,825,833
Ensembl chr30:24,823,815...24,824,792
JBrowse link
G FOXC2 forkhead box C2 IEA Ensembl GO_REF:0000107 NCBI chr 5:66,234,336...66,296,007
Ensembl chr 5:66,294,176...66,295,693
JBrowse link
G FOXF1 forkhead box F1 IEA Ensembl GO_REF:0000107 NCBI chr 5:66,343,776...66,347,785
Ensembl chr 5:66,345,150...66,347,935
JBrowse link
G HES7 hes family bHLH transcription factor 7 ISO (MGI:MGI:3046002|PMID:15170214)
(MGI:MGI:2152470|PMID:11641270), (MGI:MGI:4367298|PMID:19779553)
MGI PMID:11641270, PMID:15170214, PMID:19779553 MGI:MGI:2152470, MGI:MGI:3046002, MGI:MGI:4367298 NCBI chr 5:32,944,351...32,950,433
Ensembl chr 5:32,944,037...32,947,591
JBrowse link
G KAT2A lysine acetyltransferase 2A IEA Ensembl GO_REF:0000107 NCBI chr 9:20,778,434...20,787,057
Ensembl chr 9:20,779,042...20,787,067
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 IEA Ensembl GO_REF:0000107 NCBI chr32:28,516,002...28,633,759
Ensembl chr32:28,517,108...28,634,019
JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase IEA Ensembl GO_REF:0000107 NCBI chr 6:14,631,638...14,640,147
Ensembl chr 6:14,632,691...14,635,485
JBrowse link
G LOC485469 protocadherin-8 ISO (MGI:MGI:2451199|PMID:12591245) MGI PMID:12591245 MGI:MGI:2451199 NCBI chr22:9,860,590...9,865,298 JBrowse link
G LRP6 LDL receptor related protein 6 ISO (MGI:MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:MGI:4413372 NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
JBrowse link
G MED12 mediator complex subunit 12 ISO (MGI:MGI:4839544|PMID:20589884) MGI PMID:20589884 MGI:MGI:4839544 NCBI chr  X:55,487,629...55,508,941
Ensembl chr  X:55,482,013...55,509,992
JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 ISO (MGI:MGI:3578712|PMID:15902259) MGI PMID:15902259 MGI:MGI:3578712 NCBI chr 3:52,757,581...52,759,987
Ensembl chr 3:52,756,836...52,760,004
JBrowse link
G MIB1 mindbomb E3 ubiquitin protein ligase 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:66,173,414...66,289,477
Ensembl chr 7:66,178,594...66,289,491
JBrowse link
G MSGN1 mesogenin 1 IEA Ensembl GO_REF:0000107 NCBI chr17:13,266,674...13,267,968
Ensembl chr17:13,266,674...13,267,240
JBrowse link
G MYF5 myogenic factor 5 IEA Ensembl GO_REF:0000107 NCBI chr15:23,049,235...23,051,604
Ensembl chr15:23,048,585...23,051,970
JBrowse link
G MYF6 myogenic factor 6 IEA Ensembl GO_REF:0000107 NCBI chr15:23,039,090...23,041,092
Ensembl chr15:23,039,416...23,041,019
JBrowse link
G NCKAP1 NCK associated protein 1 ISO (MGI:MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:MGI:3701029 NCBI chr36:25,965,243...26,054,775
Ensembl chr36:25,965,938...26,054,760
JBrowse link
G NKX3-1 NK3 homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr25:33,815,343...33,817,465
Ensembl chr25:33,815,095...33,817,474
JBrowse link
G NLE1 notchless homolog 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:38,222,083...38,230,819
Ensembl chr 9:38,222,051...38,365,621
JBrowse link
G PALB2 partner and localizer of BRCA2 IEA Ensembl GO_REF:0000107 NCBI chr 6:22,209,711...22,237,798
Ensembl chr 6:22,209,384...22,237,745
JBrowse link
G PAX1 paired box 1 IEA Ensembl GO_REF:0000107 NCBI chr24:1,742,570...1,752,593
Ensembl chr24:1,743,940...1,753,185
JBrowse link
G PLXNA2 plexin A2 IEA Ensembl GO_REF:0000107 NCBI chr 7:6,863,518...7,049,301
Ensembl chr 7:6,863,663...7,049,250
JBrowse link
G POFUT1 protein O-fucosyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr24:21,608,905...21,636,084
Ensembl chr24:21,608,899...21,632,979
JBrowse link
G POGLUT1 protein O-glucosyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr33:23,122,682...23,150,863
Ensembl chr33:23,121,563...23,148,678
JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr29:24,904...243,926
Ensembl chr29:35,007...243,895
JBrowse link
G PSEN1 presenilin 1 IEA Ensembl GO_REF:0000107 NCBI chr 8:46,495,551...46,569,532
Ensembl chr 8:46,495,624...46,569,532
JBrowse link
G PSEN2 presenilin 2 ISO (MGI:MGI:1347695|PMID:10557208), (MGI:MGI:4367298|PMID:19779553) MGI PMID:10557208, PMID:19779553 MGI:MGI:1347695, MGI:MGI:4367298 NCBI chr 7:38,147,157...38,163,023
Ensembl chr 7:38,147,173...38,166,722
JBrowse link
G RAD51D RAD51 paralog D IEA Ensembl GO_REF:0000107 NCBI chr 9:38,242,178...38,259,788
Ensembl chr 9:38,222,051...38,365,621
JBrowse link
G RBPJ recombination signal binding protein for immunoglobulin kappa J region IEA Ensembl GO_REF:0000107 NCBI chr 3:84,060,417...84,286,008
Ensembl chr 3:84,064,440...84,286,360
JBrowse link
G RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase IEA Ensembl GO_REF:0000107 NCBI chr 9:38,271,419...38,346,103
Ensembl chr 9:38,222,051...38,365,621
JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 ISO (MGI:MGI:3613215|PMID:16326386)
(MGI:MGI:3715395|PMID:17531978)
UniProtKB
MGI
PMID:16326386, PMID:17531978 MGI:MGI:3613215, MGI:MGI:3715395 NCBI chr12:44,144,821...44,168,236 JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:95,209,122...95,280,956
Ensembl chr 1:95,088,745...95,280,151
JBrowse link
G SEMA3C semaphorin 3C IEA Ensembl GO_REF:0000107 NCBI chr18:20,457,683...20,748,008
Ensembl chr18:20,459,925...20,635,276
JBrowse link
G SFRP1 secreted frizzled related protein 1 ISO (PMID:10654605)
(MGI:MGI:3618960|PMID:16467359)
BHF-UCL
MGI
PMID:10654605, PMID:16467359 MGI:MGI:3618960 NCBI chr16:24,262,451...24,306,162
Ensembl chr16:24,261,946...24,302,964
JBrowse link
G SFRP2 secreted frizzled related protein 2 ISO (MGI:MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:MGI:3618960 NCBI chr15:51,541,197...51,548,765
Ensembl chr15:51,540,500...51,548,765
JBrowse link
G SMAD3 SMAD family member 3 IEA Ensembl GO_REF:0000107 NCBI chr30:31,246,313...31,360,098
Ensembl chr30:31,245,657...31,363,337
JBrowse link
G TBX18 T-box transcription factor 18 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:44,901,076...44,929,730
Ensembl chr12:44,873,119...44,929,205
JBrowse link
G TBX19 T-box transcription factor 19 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:30,198,912...30,248,410
Ensembl chr 7:30,185,850...30,365,512
JBrowse link
G TBXT T-box transcription factor T IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:54,183,495...54,192,331
Ensembl chr 1:54,183,153...54,192,352
JBrowse link
G TCAP titin-cap IEA Ensembl GO_REF:0000107 NCBI chr 9:22,811,792...22,812,980
Ensembl chr 9:22,794,177...22,813,012
JBrowse link
G TCF15 transcription factor 15 IEA Ensembl GO_REF:0000107 NCBI chr24:20,274,113...20,281,081
Ensembl chr24:20,274,050...20,280,270
JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 ISO (MGI:MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:MGI:4453264 NCBI chr26:6,039,046...6,047,490
Ensembl chr26:6,039,405...6,047,459
JBrowse link
G TP53 tumor protein p53 IEA Ensembl GO_REF:0000107 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109
JBrowse link
G TTN titin ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chr36:22,146,870...22,417,858
Ensembl chr36:22,147,824...22,417,826
JBrowse link
G WNT3A Wnt family member 3A ISO (MGI:MGI:3037351|PMID:12636920)
(MGI:MGI:3611726|PMID:16291790), (MGI:MGI:64780|PMID:8299937)
MGI PMID:8299937, PMID:12636920, PMID:16291790 MGI:MGI:3037351, MGI:MGI:3611726, MGI:MGI:64780 NCBI chr14:864,393...899,698
Ensembl chr14:863,424...896,412
JBrowse link
G WNT5A Wnt family member 5A IEA Ensembl GO_REF:0000107 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
JBrowse link
G XRCC2 X-ray repair cross complementing 2 IEA Ensembl GO_REF:0000107 NCBI chr16:16,402,821...16,429,095
Ensembl chr16:16,402,933...16,429,037
JBrowse link
G ZC3H7B zinc finger CCCH-type containing 7B ISO (MGI:MGI:3583034|PMID:15937931) MGI PMID:15937931 MGI:MGI:3583034 NCBI chr10:23,882,379...23,944,850
Ensembl chr10:23,884,981...23,920,131
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 IEA Ensembl GO_REF:0000107 NCBI chr19:46,419,812...46,541,888
Ensembl chr19:46,423,998...46,542,122
JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 IEA Ensembl GO_REF:0000107 NCBI chr17:14,508,543...14,515,657
Ensembl chr17:14,509,333...14,589,228
JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HES5 hes family bHLH transcription factor 5 IEA Ensembl GO_REF:0000107 NCBI chr 5:57,387,961...57,389,412
Ensembl chr 5:57,388,674...57,389,388
JBrowse link
G IRX1 iroquois homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr34:9,537,231...9,544,029
Ensembl chr34:9,538,479...9,544,029
JBrowse link
G IRX2 iroquois homeobox 2 IEA Ensembl GO_REF:0000107 NCBI chr34:10,228,067...10,233,214
Ensembl chr34:10,227,807...10,232,998
JBrowse link
G IRX3 iroquois homeobox 3 IEA Ensembl GO_REF:0000107 NCBI chr 2:61,555,608...61,559,185
Ensembl chr 2:61,555,492...61,558,958
JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 IEA Ensembl GO_REF:0000107 NCBI chr17:14,508,543...14,515,657
Ensembl chr17:14,509,333...14,589,228
JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEUROG1 neurogenin 1 IEA Ensembl GO_REF:0000107 NCBI chr11:23,563,128...23,564,819
Ensembl chr11:23,563,803...23,564,543
JBrowse link
G TIFAB TIFA inhibitor IEA Ensembl GO_REF:0000107 NCBI chr11:23,492,317...23,495,825
Ensembl chr11:23,492,867...23,493,352
JBrowse link
G WT1 WT1 transcription factor ISO (MGI:MGI:62488|PMID:8395349) UniProtKB PMID:8395349 MGI:MGI:62488 NCBI chr18:35,099,660...35,148,767
Ensembl chr18:35,103,934...35,148,000
JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NRP1 neuropilin 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:3,416,062...3,553,929
Ensembl chr 2:3,413,821...3,552,483
JBrowse link
G NRP2 neuropilin 2 IEA Ensembl GO_REF:0000107 NCBI chr37:14,293,545...14,408,984
Ensembl chr37:14,293,614...14,406,949
JBrowse link
G SEMA3A semaphorin 3A IEA Ensembl GO_REF:0000107 NCBI chr18:23,411,607...23,866,631
Ensembl chr18:23,414,576...23,867,098
JBrowse link
G SEMA3F semaphorin 3F IEA Ensembl GO_REF:0000107 NCBI chr20:39,135,580...39,165,381
Ensembl chr20:39,136,523...39,161,325
JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 IEA Ensembl GO_REF:0000107 NCBI chr26:35,697,428...35,701,596
Ensembl chr26:35,697,618...35,701,496
JBrowse link
G LRP6 LDL receptor related protein 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
JBrowse link
G SFRP1 secreted frizzled related protein 1 ISO (MGI:MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:MGI:3793375 NCBI chr16:24,262,451...24,306,162
Ensembl chr16:24,261,946...24,302,964
JBrowse link
G SFRP2 secreted frizzled related protein 2 IEA Ensembl GO_REF:0000107 NCBI chr15:51,541,197...51,548,765
Ensembl chr15:51,540,500...51,548,765
JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NCKAP1 NCK associated protein 1 ISO (MGI:MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:MGI:3701029 NCBI chr36:25,965,243...26,054,775
Ensembl chr36:25,965,938...26,054,760
JBrowse link
G PCSK6 proprotein convertase subtilisin/kexin type 6 IEA Ensembl GO_REF:0000107 NCBI chr 3:39,582,804...39,768,838
Ensembl chr 3:39,582,819...39,767,929
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16162
    multicellular organismal process 7610
      pattern specification process 468
        regionalization 373
          segmentation 107
            appendage segmentation + 0
            blastoderm segmentation + 18
            brain segmentation 3
            central nervous system segmentation + 3
            renal system segmentation + 1
            segment specification + 15
            somitogenesis + 78
            trunk segmentation + 4
Path 2
Term Annotations click to browse term
  biological_process 16162
    developmental process 6290
      anatomical structure development 5839
        multicellular organism development 5337
          pattern specification process 468
            regionalization 373
              segmentation 107
                appendage segmentation + 0
                blastoderm segmentation + 18
                brain segmentation 3
                central nervous system segmentation + 3
                renal system segmentation + 1
                segment specification + 15
                somitogenesis + 78
                trunk segmentation + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.