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ONTOLOGY REPORT - ANNOTATIONS


Term:segmentation
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Accession:GO:0035282 term browser browse the term
Definition:The regionalization process that divides an organism or part of an organism into a series of semi-repetitive parts, or segments, often arranged along a longitudinal axis.
Synonyms:xref: Wikipedia:Segmentation_(biology)


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segmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACD ACD shelterin complex subunit and telomerase recruitment factor ISO (MGI:MGI:3526782|PMID:15537664) MGI PMID:15537664 MGI:MGI:3526782 NCBI chr16:67,657,512...67,660,832
Ensembl chr16:67,657,512...67,660,815
JBrowse link
G DVL2 dishevelled segment polarity protein 2 ISO (MGI:MGI:82989|PMID:8887313) BHF-UCL PMID:8887313 MGI:MGI:82989 NCBI chr17:7,225,341...7,234,544
Ensembl chr17:7,225,342...7,234,517
JBrowse link
G PSEN1 presenilin 1 ISO (MGI:MGI:3587130|PMID:16079160)
(MGI:MGI:1931803|PMID:11262239)
MGI PMID:11262239, PMID:16079160 MGI:MGI:1931803, MGI:MGI:3587130 NCBI chr14:73,136,436...73,223,691
Ensembl chr14:73,136,418...73,223,691
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FRS2 fibroblast growth factor receptor substrate 2 IEA Ensembl GO_REF:0000107 NCBI chr12:69,470,371...69,579,793
Ensembl chr12:69,470,349...69,579,789
JBrowse link
G FZD5 frizzled class receptor 5 IDA (PMID:9054360) BHF-UCL PMID:9054360 NCBI chr 2:207,753,889...207,769,906
Ensembl chr 2:207,762,598...207,769,906
JBrowse link
G HOXD8 homeobox D8 NAS (PMID:2568311) UniProtKB PMID:2568311 NCBI chr 2:176,129,705...176,132,695
Ensembl chr 2:176,129,694...176,132,695
JBrowse link
G TASOR transcription activation suppressor ISS UniProt GO_REF:0000024 NCBI chr 3:56,620,132...56,683,265
Ensembl chr 3:56,620,133...56,683,237
JBrowse link
G TBX3 T-box transcription factor 3 IMP (PMID:9207801) UniProtKB PMID:9207801 NCBI chr12:114,670,255...114,684,175
Ensembl chr12:114,670,255...114,684,175
JBrowse link
G TBXT T-box transcription factor T TAS (PMID:8963900) PINC PMID:8963900 NCBI chr 6:166,157,656...166,168,655
Ensembl chr 6:166,157,656...166,168,700
JBrowse link
G TCF7L1 transcription factor 7 like 1 ISO (MGI:MGI:3043490|PMID:14668413) MGI PMID:14668413 MGI:MGI:3043490 NCBI chr 2:85,133,392...85,310,387
Ensembl chr 2:85,133,392...85,310,387
JBrowse link
G TDGF1 teratocarcinoma-derived growth factor 1 ISS UniProtKB GO_REF:0000024 NCBI chr 3:46,574,535...46,582,457
Ensembl chr 3:46,574,534...46,582,457
JBrowse link
G WNT5A Wnt family member 5A IEA Ensembl GO_REF:0000107 NCBI chr 3:55,465,715...55,505,261
Ensembl chr 3:55,465,715...55,490,539
JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044
JBrowse link
G MED12 mediator complex subunit 12 IEA Ensembl GO_REF:0000107 NCBI chr  X:71,118,596...71,142,450
Ensembl chr  X:71,118,556...71,142,454
JBrowse link
G WNT3A Wnt family member 3A IEA Ensembl GO_REF:0000107 NCBI chr 1:228,006,998...228,067,113
Ensembl chr 1:228,006,998...228,061,271
JBrowse link
BMP signaling pathway involved in renal system segmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 ISS UniProtKB GO_REF:0000024 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761
JBrowse link
brain segmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGR2 early growth response 2 IEA Ensembl GO_REF:0000107 NCBI chr10:62,811,996...62,819,167
Ensembl chr10:62,811,996...62,919,900
JBrowse link
G HOXA2 homeobox A2 IEA Ensembl GO_REF:0000107 NCBI chr 7:27,100,354...27,102,683
Ensembl chr 7:27,100,354...27,102,686
JBrowse link
G MAFB MAF bZIP transcription factor B IEA Ensembl GO_REF:0000107 NCBI chr20:40,685,848...40,689,236
Ensembl chr20:40,685,848...40,689,236
JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SFRP1 secreted frizzled related protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473
JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISS UniProtKB GO_REF:0000024 NCBI chr 7:2,512,529...2,529,177
Ensembl chr 7:2,512,529...2,529,177
JBrowse link
G NRARP NOTCH regulated ankyrin repeat protein IEA Ensembl GO_REF:0000107 NCBI chr 9:137,299,631...137,302,271
Ensembl chr 9:137,299,631...137,302,271
JBrowse link
P granule organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLD6 phospholipase D family member 6 ISS UniProtKB GO_REF:0000024 NCBI chr17:17,200,990...17,206,905
Ensembl chr17:17,200,995...17,206,333
JBrowse link
G TDRD5 tudor domain containing 5 ISS UniProtKB GO_REF:0000024 NCBI chr 1:179,591,613...179,691,272
Ensembl chr 1:179,591,613...179,691,272
JBrowse link
pole plasm assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WDR77 WD repeat domain 77 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:111,439,890...111,449,256
Ensembl chr 1:111,439,890...111,449,256
JBrowse link
regulation of cell motility involved in somitogenic axis elongation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NKD1 NKD inhibitor of WNT signaling pathway 1 ISS (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr16:50,548,396...50,649,249
Ensembl chr16:50,548,396...50,649,249
JBrowse link
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha IGI (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr 3:135,965,673...136,149,615
Ensembl chr 3:135,965,728...136,147,894
JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDX1 caudal type homeobox 1 ISS UniProtKB GO_REF:0000024 NCBI chr 5:150,166,778...150,184,558
Ensembl chr 5:150,166,778...150,184,558
JBrowse link
G CDX2 caudal type homeobox 2 ISS UniProtKB GO_REF:0000024 NCBI chr13:27,960,918...27,969,337
Ensembl chr13:27,960,918...27,969,315
JBrowse link
G DLL1 delta like canonical Notch ligand 1 ISS UniProtKB GO_REF:0000024 NCBI chr 6:170,282,200...170,291,078
Ensembl chr 6:170,282,206...170,306,565
JBrowse link
G DMRT2 doublesex and mab-3 related transcription factor 2 IEA Ensembl GO_REF:0000107 NCBI chr 9:1,003,237...1,057,554
Ensembl chr 9:1,049,858...1,057,552
JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase IMP (PMID:19061953) UniProtKB PMID:19061953 NCBI chr 7:2,512,529...2,529,177
Ensembl chr 7:2,512,529...2,529,177
JBrowse link
G NOTCH1 notch receptor 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048
JBrowse link
G PAX3 paired box 3 ISO (MGI:MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:MGI:3820487 NCBI chr 2:222,199,887...222,298,998
Ensembl chr 2:222,199,888...222,298,996
Ensembl chr 2:222,199,888...222,298,996
JBrowse link
retinoic acid receptor signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 IEA Ensembl GO_REF:0000107 NCBI chr15:57,953,429...58,065,711
Ensembl chr15:57,953,424...58,497,866
JBrowse link
segment specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMI1 BMI1 proto-oncogene, polycomb ring finger TAS (PMID:7715727) PINC PMID:7715727 NCBI chr10:22,321,099...22,331,484
Ensembl chr10:22,321,099...22,331,484
JBrowse link
G COMMD3-BMI1 COMMD3-BMI1 readthrough TAS (PMID:7715727) PINC PMID:7715727 NCBI chr10:22,316,388...22,331,484
Ensembl chr10:22,316,388...22,329,542
JBrowse link
G DVL2 dishevelled segment polarity protein 2 ISS BHF-UCL GO_REF:0000024 NCBI chr17:7,225,341...7,234,544
Ensembl chr17:7,225,342...7,234,517
JBrowse link
G HOXA2 homeobox A2 IEA Ensembl GO_REF:0000107 NCBI chr 7:27,100,354...27,102,683
Ensembl chr 7:27,100,354...27,102,686
JBrowse link
G MAFB MAF bZIP transcription factor B IEA Ensembl GO_REF:0000107 NCBI chr20:40,685,848...40,689,236
Ensembl chr20:40,685,848...40,689,236
JBrowse link
G MLLT3 MLLT3 super elongation complex subunit IEA Ensembl GO_REF:0000107 NCBI chr 9:20,341,669...20,622,499
Ensembl chr 9:20,341,669...20,622,499
Ensembl chr 9:20,341,669...20,622,499
JBrowse link
G MSGN1 mesogenin 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:17,816,460...17,817,798
Ensembl chr 2:17,816,460...17,817,798
JBrowse link
G MTF2 metal response element binding transcription factor 2 ISS UniProtKB GO_REF:0000024 NCBI chr 1:93,079,283...93,139,076
Ensembl chr 1:93,079,235...93,139,079
JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 IEA Ensembl GO_REF:0000107 NCBI chr 2:120,013,032...120,179,119
Ensembl chr 2:120,013,077...120,179,119
JBrowse link
G FOXA2 forkhead box A2 ISO (MGI:MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:MGI:2157654 NCBI chr20:22,580,998...22,585,490
Ensembl chr20:22,581,005...22,585,455
JBrowse link
G GDF3 growth differentiation factor 3 IEA Ensembl GO_REF:0000107 NCBI chr12:7,689,784...7,695,775
Ensembl chr12:7,689,784...7,695,775
JBrowse link
G KDM6A lysine demethylase 6A IEA Ensembl GO_REF:0000107 NCBI chr  X:44,873,182...45,112,779
Ensembl chr  X:44,873,188...45,112,779
Ensembl chr  X:44,873,188...45,112,779
Ensembl chr  X:44,873,188...45,112,779
JBrowse link
G LHX1 LIM homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr17:36,937,475...36,944,612
Ensembl chr17:36,936,785...36,944,612
JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:89,734,772...89,751,309
Ensembl chr15:89,748,661...89,751,310
JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:89,776,332...89,778,754
Ensembl chr15:89,760,591...89,778,754
JBrowse link
G NRARP NOTCH regulated ankyrin repeat protein IEA Ensembl GO_REF:0000107 NCBI chr 9:137,299,631...137,302,271
Ensembl chr 9:137,299,631...137,302,271
JBrowse link
G OTX2 orthodenticle homeobox 2 ISO (MGI:MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:MGI:2157654 NCBI chr14:56,799,905...56,810,479
Ensembl chr14:56,799,905...56,816,693
JBrowse link
G RIPPLY1 ripply transcriptional repressor 1 ISS UniProtKB GO_REF:0000024 NCBI chr  X:106,900,063...106,903,341
Ensembl chr  X:106,900,063...106,903,341
JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 ISS UniProtKB GO_REF:0000024 NCBI chr 6:83,853,266...83,857,515
Ensembl chr 6:83,853,266...83,857,515
JBrowse link
G SMAD4 SMAD family member 4 IEA Ensembl GO_REF:0000107 NCBI chr18:51,030,213...51,085,042
Ensembl chr18:51,028,394...51,085,045
JBrowse link
G TBX6 T-box transcription factor 6 IEA Ensembl GO_REF:0000107 NCBI chr16:30,085,793...30,091,927
Ensembl chr16:30,085,793...30,091,924
Ensembl chr16:30,085,793...30,091,924
JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 IEA Ensembl GO_REF:0000107 NCBI chr12:123,584,552...123,598,582
Ensembl chr12:123,584,533...123,598,582
JBrowse link
somite specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COBL cordon-bleu WH2 repeat protein ISS BHF-UCL GO_REF:0000024 NCBI chr 7:51,016,212...51,316,809
Ensembl chr 7:51,016,212...51,316,818
JBrowse link
G DLL1 delta like canonical Notch ligand 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:170,282,200...170,291,078
Ensembl chr 6:170,282,206...170,306,565
JBrowse link
G MEOX1 mesenchyme homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr17:43,640,389...43,661,977
Ensembl chr17:43,640,389...43,661,922
JBrowse link
G MEOX2 mesenchyme homeobox 2 IEA Ensembl GO_REF:0000107 NCBI chr 7:15,611,212...15,686,683
Ensembl chr 7:15,611,212...15,686,683
JBrowse link
G RIPPLY1 ripply transcriptional repressor 1 ISS UniProtKB GO_REF:0000024 NCBI chr  X:106,900,063...106,903,341
Ensembl chr  X:106,900,063...106,903,341
JBrowse link
somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI1 abl interactor 1 IEA Ensembl GO_REF:0000107 NCBI chr10:26,746,596...26,860,986
Ensembl chr10:26,746,593...26,861,087
JBrowse link
G ATM ATM serine/threonine kinase IEA Ensembl GO_REF:0000107 NCBI chr11:108,222,484...108,369,102
Ensembl chr11:108,222,832...108,369,102
Ensembl chr11:108,222,832...108,369,102
JBrowse link
G AXIN2 axin 2 IEA Ensembl GO_REF:0000107 NCBI chr17:65,528,563...65,561,648
Ensembl chr17:65,528,563...65,561,648
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A IEA Ensembl GO_REF:0000107 NCBI chr10:86,755,786...86,927,969
Ensembl chr10:86,756,601...86,932,838
Ensembl chr10:86,756,601...86,932,838
JBrowse link
G CRB2 crumbs cell polarity complex component 2 ISS UniProtKB GO_REF:0000024 NCBI chr 9:123,354,065...123,380,326
Ensembl chr 9:123,356,170...123,380,324
JBrowse link
G DLL1 delta like canonical Notch ligand 1 ISS UniProtKB GO_REF:0000024 NCBI chr 6:170,282,200...170,291,078
Ensembl chr 6:170,282,206...170,306,565
JBrowse link
G DLL3 delta like canonical Notch ligand 3 IEA Ensembl GO_REF:0000107 NCBI chr19:39,498,947...39,508,469
Ensembl chr19:39,498,895...39,508,481
JBrowse link
G EP300 E1A binding protein p300 IEA Ensembl GO_REF:0000107 NCBI chr22:41,092,592...41,180,077
Ensembl chr22:41,092,592...41,180,077
JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 ISO (MGI:MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:MGI:3821807 NCBI chr 2:120,013,032...120,179,119
Ensembl chr 2:120,013,077...120,179,119
JBrowse link
G FOXB1 forkhead box B1 ISS UniProtKB GO_REF:0000024 NCBI chr15:60,004,311...60,007,444
Ensembl chr15:60,004,234...60,061,730
JBrowse link
G FOXC1 forkhead box C1 IEA Ensembl GO_REF:0000107 NCBI chr 6:1,609,915...1,613,897
Ensembl chr 6:1,609,915...1,613,897
JBrowse link
G FOXC2 forkhead box C2 IEA Ensembl GO_REF:0000107 NCBI chr16:86,566,829...86,569,728
Ensembl chr16:86,566,829...86,569,728
JBrowse link
G FOXF1 forkhead box F1 IEA Ensembl GO_REF:0000107 NCBI chr16:86,510,527...86,515,422
Ensembl chr16:86,510,527...86,515,422
JBrowse link
G HES7 hes family bHLH transcription factor 7 IEA Ensembl GO_REF:0000107 NCBI chr17:8,120,590...8,126,032
Ensembl chr17:8,120,592...8,124,106
JBrowse link
G IFITM1 interferon induced transmembrane protein 1 ISO (MGI:MGI:3578569|PMID:15857914) MGI PMID:15857914 MGI:MGI:3578569 NCBI chr11:314,040...315,272
Ensembl chr11:313,506...315,272
JBrowse link
G KAT2A lysine acetyltransferase 2A IEA Ensembl GO_REF:0000107 NCBI chr17:42,113,111...42,121,367
Ensembl chr17:42,113,111...42,121,367
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:108,047,548...108,168,932
Ensembl chr 4:108,047,545...108,168,956
JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISS UniProtKB GO_REF:0000024 NCBI chr 7:2,512,529...2,529,177
Ensembl chr 7:2,512,529...2,529,177
JBrowse link
G LRP6 LDL receptor related protein 6 ISO (MGI:MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:MGI:4413372 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044
JBrowse link
G MED12 mediator complex subunit 12 ISO (MGI:MGI:4839544|PMID:20589884) MGI PMID:20589884 MGI:MGI:4839544 NCBI chr  X:71,118,596...71,142,450
Ensembl chr  X:71,118,556...71,142,454
JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 ISO (MGI:MGI:3578712|PMID:15902259) MGI PMID:15902259 MGI:MGI:3578712 NCBI chr15:89,776,332...89,778,754
Ensembl chr15:89,760,591...89,778,754
JBrowse link
G MIB1 mindbomb E3 ubiquitin protein ligase 1 IEA Ensembl GO_REF:0000107 NCBI chr18:21,740,792...21,870,953
Ensembl chr18:21,704,957...21,870,957
JBrowse link
G MSGN1 mesogenin 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:17,816,460...17,817,798
Ensembl chr 2:17,816,460...17,817,798
JBrowse link
G MYF5 myogenic factor 5 IEA Ensembl GO_REF:0000107 NCBI chr12:80,716,912...80,719,671
Ensembl chr12:80,716,912...80,719,671
JBrowse link
G MYF6 myogenic factor 6 IEA Ensembl GO_REF:0000107 NCBI chr12:80,707,634...80,709,474
Ensembl chr12:80,707,634...80,709,474
JBrowse link
G NCKAP1 NCK associated protein 1 ISO (MGI:MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:MGI:3701029 NCBI chr 2:182,909,115...183,038,457
Ensembl chr 2:182,909,115...183,038,858
JBrowse link
G NKX3-1 NK3 homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr 8:23,678,693...23,682,938
Ensembl chr 8:23,678,697...23,682,938
JBrowse link
G NLE1 notchless homolog 1 IEA Ensembl GO_REF:0000107 NCBI chr17:35,128,730...35,142,304
Ensembl chr17:35,128,730...35,142,304
JBrowse link
G PALB2 partner and localizer of BRCA2 IEA Ensembl GO_REF:0000107 NCBI chr16:23,603,162...23,641,337
Ensembl chr16:23,603,160...23,641,310
JBrowse link
G PAX1 paired box 1 IEA Ensembl GO_REF:0000107 NCBI chr20:21,705,664...21,718,481
Ensembl chr20:21,705,659...21,718,486
JBrowse link
G PCDH8 protocadherin 8 IEA Ensembl GO_REF:0000107 NCBI chr13:52,842,889...52,848,640
Ensembl chr13:52,842,889...52,848,641
JBrowse link
G PLXNA2 plexin A2 IEA Ensembl GO_REF:0000107 NCBI chr 1:208,022,242...208,244,384
Ensembl chr 1:208,022,242...208,244,384
JBrowse link
G POFUT1 protein O-fucosyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr20:32,207,880...32,238,658
Ensembl chr20:32,207,880...32,238,658
JBrowse link
G POGLUT1 protein O-glucosyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:119,468,955...119,494,708
Ensembl chr 3:119,468,963...119,494,708
JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr 8:47,773,111...47,960,136
Ensembl chr 8:47,773,111...47,960,178
Ensembl chr 8:47,773,111...47,960,178
JBrowse link
G PSEN1 presenilin 1 IEA Ensembl GO_REF:0000107 NCBI chr14:73,136,436...73,223,691
Ensembl chr14:73,136,418...73,223,691
JBrowse link
G PSEN2 presenilin 2 ISO (MGI:MGI:1347695|PMID:10557208), (MGI:MGI:4367298|PMID:19779553) MGI PMID:10557208, PMID:19779553 MGI:MGI:1347695, MGI:MGI:4367298 NCBI chr 1:226,870,594...226,903,829
Ensembl chr 1:226,870,184...226,896,105
JBrowse link
G RBPJ recombination signal binding protein for immunoglobulin kappa J region IEA Ensembl GO_REF:0000107 NCBI chr 4:26,163,458...26,435,131
Ensembl chr 4:26,163,455...26,435,131
JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 ISS UniProtKB GO_REF:0000024 NCBI chr 6:83,853,266...83,857,515
Ensembl chr 6:83,853,266...83,857,515
JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 IEA Ensembl GO_REF:0000107 NCBI chr 9:91,722,598...91,950,228
Ensembl chr 9:91,563,091...91,950,228
JBrowse link
G SEMA3C semaphorin 3C IEA Ensembl GO_REF:0000107 NCBI chr 7:80,742,538...80,922,389
Ensembl chr 7:80,742,538...80,922,359
JBrowse link
G SFRP1 secreted frizzled related protein 1 ISO (PMID:10654605)
(MGI:MGI:3618960|PMID:16467359)
BHF-UCL
MGI
PMID:10654605, PMID:16467359 MGI:MGI:3618960 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473
JBrowse link
G SFRP2 secreted frizzled related protein 2 ISO (MGI:MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:MGI:3618960 NCBI chr 4:153,780,591...153,789,083
Ensembl chr 4:153,780,591...153,789,083
JBrowse link
G SMAD3 SMAD family member 3 IEA Ensembl GO_REF:0000107 NCBI chr15:67,065,602...67,195,195
Ensembl chr15:67,063,763...67,195,169
JBrowse link
G TBX18 T-box transcription factor 18 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:84,666,810...84,764,598
Ensembl chr 6:84,687,351...84,764,598
JBrowse link
G TBX19 T-box transcription factor 19 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:168,280,877...168,314,426
Ensembl chr 1:168,280,877...168,314,426
JBrowse link
G TBXT T-box transcription factor T IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:166,157,656...166,168,655
Ensembl chr 6:166,157,656...166,168,700
JBrowse link
G TCAP titin-cap IEA Ensembl GO_REF:0000107 NCBI chr17:39,665,349...39,666,554
Ensembl chr17:39,665,349...39,666,554
Ensembl chr17:39,665,349...39,666,554
JBrowse link
G TCF15 transcription factor 15 IEA Ensembl GO_REF:0000107 NCBI chr20:603,993...610,266
Ensembl chr20:603,797...610,398
JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 ISO (MGI:MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:MGI:4453264 NCBI chr12:123,584,552...123,598,582
Ensembl chr12:123,584,533...123,598,582
JBrowse link
G TP53 tumor protein p53 IEA Ensembl GO_REF:0000107 NCBI chr17:7,668,402...7,687,550
Ensembl chr17:7,661,779...7,687,538
Ensembl chr17:7,661,779...7,687,538
JBrowse link
G TTN titin ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chr 2:178,525,989...178,807,423
Ensembl chr 2:178,525,989...178,830,802
JBrowse link
G WNT3A Wnt family member 3A ISO (MGI:MGI:3611726|PMID:16291790), (MGI:MGI:64780|PMID:8299937)
(MGI:MGI:3037351|PMID:12636920)
MGI PMID:8299937, PMID:12636920, PMID:16291790 MGI:MGI:3037351, MGI:MGI:3611726, MGI:MGI:64780 NCBI chr 1:228,006,998...228,067,113
Ensembl chr 1:228,006,998...228,061,271
JBrowse link
G WNT5A Wnt family member 5A IEA Ensembl GO_REF:0000107 NCBI chr 3:55,465,715...55,505,261
Ensembl chr 3:55,465,715...55,490,539
JBrowse link
G XRCC2 X-ray repair cross complementing 2 IEA Ensembl GO_REF:0000107 NCBI chr 7:152,644,776...152,676,141
Ensembl chr 7:152,644,776...152,676,141
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:144,384,081...144,520,119
Ensembl chr 2:144,364,364...144,521,057
JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 ISS UniProtKB GO_REF:0000024 NCBI chr 2:19,351,485...19,358,623
Ensembl chr 2:19,351,485...19,358,623
JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HES5 hes family bHLH transcription factor 5 IEA Ensembl GO_REF:0000107 NCBI chr 1:2,528,745...2,530,554
Ensembl chr 1:2,528,745...2,530,263
JBrowse link
G IRX1 iroquois homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:3,595,832...3,601,403
Ensembl chr 5:3,595,832...3,601,403
JBrowse link
G IRX2 iroquois homeobox 2 IEA Ensembl GO_REF:0000107 NCBI chr 5:2,707,930...2,751,677
Ensembl chr 5:2,745,845...2,751,677
JBrowse link
G IRX3 iroquois homeobox 3 IEA Ensembl GO_REF:0000107 NCBI chr16:54,283,304...54,286,787
Ensembl chr16:54,283,304...54,286,787
JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 ISS UniProtKB GO_REF:0000024 NCBI chr 2:19,351,485...19,358,623
Ensembl chr 2:19,351,485...19,358,623
JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BASP1 brain abundant membrane attached signal protein 1 ISS UniProtKB GO_REF:0000024 NCBI chr 5:17,216,823...17,276,834
Ensembl chr 5:17,065,598...17,276,843
JBrowse link
G DCANP1 dendritic cell associated nuclear protein IGI (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:135,444,214...135,447,348
Ensembl chr 5:135,444,214...135,447,348
JBrowse link
G NEUROG1 neurogenin 1 IGI (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:135,534,282...135,535,964
Ensembl chr 5:135,534,282...135,535,964
JBrowse link
G TIFAB TIFA inhibitor IGI (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:135,444,226...135,452,351
Ensembl chr 5:135,444,226...135,452,351
JBrowse link
G WT1 WT1 transcription factor ISS UniProtKB GO_REF:0000024 NCBI chr11:32,387,775...32,435,539
Ensembl chr11:32,387,775...32,435,564
Ensembl chr11:32,387,775...32,435,564
JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NRP1 neuropilin 1 IEA Ensembl GO_REF:0000107 NCBI chr10:33,177,493...33,334,667
Ensembl chr10:33,177,492...33,336,262
JBrowse link
G NRP2 neuropilin 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:205,682,501...205,798,131
Ensembl chr 2:205,681,990...205,798,133
JBrowse link
G SEMA3A semaphorin 3A IEA Ensembl GO_REF:0000107 NCBI chr 7:83,955,777...84,515,189
Ensembl chr 7:83,955,777...84,492,724
JBrowse link
G SEMA3F semaphorin 3F IEA Ensembl GO_REF:0000107 NCBI chr 3:50,155,058...50,189,075
Ensembl chr 3:50,155,045...50,189,075
JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 IEA Ensembl GO_REF:0000107 NCBI chr10:52,314,281...52,317,657
Ensembl chr10:52,314,281...52,318,042
JBrowse link
G LRP6 LDL receptor related protein 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044
JBrowse link
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha IC (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr 3:135,965,673...136,149,615
Ensembl chr 3:135,965,728...136,147,894
JBrowse link
G SFRP1 secreted frizzled related protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473
JBrowse link
G SFRP2 secreted frizzled related protein 2 IEA Ensembl GO_REF:0000107 NCBI chr 4:153,780,591...153,789,083
Ensembl chr 4:153,780,591...153,789,083
JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NCKAP1 NCK associated protein 1 ISO (MGI:MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:MGI:3701029 NCBI chr 2:182,909,115...183,038,457
Ensembl chr 2:182,909,115...183,038,858
JBrowse link
G PCSK6 proprotein convertase subtilisin/kexin type 6 IEA Ensembl GO_REF:0000107 NCBI chr15:101,303,933...101,489,707
Ensembl chr15:101,297,142...101,525,202
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18626
    multicellular organismal process 8777
      pattern specification process 512
        regionalization 398
          segmentation 113
            appendage segmentation + 0
            blastoderm segmentation + 23
            brain segmentation 3
            central nervous system segmentation + 3
            renal system segmentation + 1
            segment specification + 18
            somitogenesis + 78
            trunk segmentation + 4
Path 2
Term Annotations click to browse term
  biological_process 18626
    developmental process 7445
      anatomical structure development 6849
        multicellular organism development 6327
          pattern specification process 512
            regionalization 398
              segmentation 113
                appendage segmentation + 0
                blastoderm segmentation + 23
                brain segmentation 3
                central nervous system segmentation + 3
                renal system segmentation + 1
                segment specification + 18
                somitogenesis + 78
                trunk segmentation + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.