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ONTOLOGY REPORT - ANNOTATIONS


Term:segmentation
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Accession:GO:0035282 term browser browse the term
Definition:The regionalization process that divides an organism or part of an organism into a series of semi-repetitive parts, or segments, often arranged along a longitudinal axis.
Synonyms:xref: Wikipedia:Segmentation_(biology)


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segmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd adrenocortical dysplasia IMP (MGI:MGI:3526782|PMID:15537664) MGI PMID:15537664 MGI:MGI:3526782 NCBI chr 8:105,698,155...105,701,228
Ensembl chr 8:105,695,860...105,701,102
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 IGI (MGI:MGI:82989|PMID:8887313) BHF-UCL PMID:8887313 MGI:MGI:82989 NCBI chr11:70,000,592...70,010,109
Ensembl chr11:70,000,595...70,012,301
JBrowse link
G Psen1 presenilin 1 IMP (MGI:MGI:3587130|PMID:16079160)
(MGI:MGI:1931803|PMID:11262239)
MGI PMID:11262239, PMID:16079160 MGI:MGI:1931803, MGI:MGI:3587130 NCBI chr12:83,688,152...83,735,095
Ensembl chr12:83,688,152...83,735,199
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 IMP (MGI:MGI:3580203|PMID:15870281) MGI PMID:15870281 MGI:MGI:3580203 NCBI chr10:117,070,127...117,148,474
Ensembl chr10:117,069,427...117,148,534
JBrowse link
G Fzd5 frizzled class receptor 5 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 1:64,730,558...64,737,750
Ensembl chr 1:64,730,558...64,737,751
JBrowse link
G Tasor transcription activation suppressor IMP (MGI:MGI:6109647|PMID:28839193) UniProt PMID:28839193 MGI:MGI:6109647 NCBI chr14:27,423,674...27,483,555
Ensembl chr14:27,428,834...27,483,555
JBrowse link
G Tbx3 T-box 3 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 5:119,670,534...119,684,724
Ensembl chr 5:119,670,669...119,684,724
JBrowse link
G Tcf7l1 transcription factor 7 like 1 (T cell specific, HMG box) IMP (MGI:MGI:3043490|PMID:14668413) MGI PMID:14668413 MGI:MGI:3043490 NCBI chr 6:72,626,371...72,789,045
Ensembl chr 6:72,626,378...72,789,254
JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 IMP (MGI:MGI:1303194|PMID:9790191) MGI PMID:9790191 MGI:MGI:1303194 NCBI chr 9:110,939,608...110,946,158
Ensembl chr 9:110,939,603...110,946,158
JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A IDA (MGI:MGI:4835157|PMID:9054360) BHF-UCL PMID:9054360 MGI:MGI:4835157 NCBI chr14:28,504,543...28,527,448
Ensembl chr14:28,504,750...28,527,448
JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 low density lipoprotein receptor-related protein 6 IGI
IBA
(MGI:MGI:1891551|PMID:11029008)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:11029008, PMID:21873635 MGI:MGI:1891551, MGI:MGI:6201960 NCBI chr 6:134,446,476...134,566,913
Ensembl chr 6:134,446,476...134,566,965
JBrowse link
G Med12 mediator complex subunit 12 IMP (MGI:MGI:4839483|PMID:20630950) MGI PMID:20630950 MGI:MGI:4839483 NCBI chr  X:101,274,091...101,298,934
Ensembl chr  X:101,274,030...101,297,465
JBrowse link
G Wnt3a wingless-type MMTV integration site family, member 3A IGI (MGI:MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:MGI:1891551 NCBI chr11:59,248,036...59,290,751
Ensembl chr11:59,248,033...59,290,752
JBrowse link
BMP signaling pathway involved in renal system segmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 IMP (MGI:MGI:3710018|PMID:17442697) UniProtKB PMID:17442697 MGI:MGI:3710018 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
brain segmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 IMP (MGI:MGI:64171|PMID:7903221) MGI PMID:7903221 MGI:MGI:64171 NCBI chr10:67,534,469...67,542,188
Ensembl chr10:67,535,475...67,542,188
JBrowse link
G Hoxa2 homeobox A2 IMP (MGI:MGI:1098901|PMID:9367425) MGI PMID:9367425 MGI:MGI:1098901 NCBI chr 6:52,162,417...52,164,831
Ensembl chr 6:52,162,417...52,164,831
JBrowse link
G Mafb v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) IMP (MGI:MGI:67780|PMID:7925021) MGI PMID:7925021 MGI:MGI:67780 NCBI chr 2:160,363,677...160,367,065
Ensembl chr 2:160,363,703...160,367,065
JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 IGI (MGI:MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:MGI:3793375 NCBI chr 8:23,411,383...23,449,632
Ensembl chr 8:23,411,502...23,449,632
JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase IMP (MGI:MGI:5545944|PMID:23072809) UniProtKB PMID:23072809 MGI:MGI:5545944 NCBI chr 5:140,607,341...140,615,545
Ensembl chr 5:140,607,320...140,615,545
JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein IMP (MGI:MGI:5317364|PMID:21795391) MGI PMID:21795391 MGI:MGI:5317364 NCBI chr 2:25,180,758...25,183,339
Ensembl chr 2:25,180,758...25,183,339
JBrowse link
P granule organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family, member 6 IMP (MGI:MGI:4943609|PMID:21397848) UniProtKB PMID:21397848 MGI:MGI:4943609 NCBI chr11:59,783,893...59,787,657
Ensembl chr11:59,783,897...59,787,645
JBrowse link
G Tdrd5 tudor domain containing 5 IMP (MGI:MGI:4946318|PMID:21383078) UniProtKB PMID:21383078 MGI:MGI:4946318 NCBI chr 1:156,255,296...156,304,304
Ensembl chr 1:156,255,296...156,303,664
JBrowse link
pole plasm assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wdr77 WD repeat domain 77 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 3:105,959,498...105,969,760
Ensembl chr 3:105,959,369...105,970,037
JBrowse link
regulation of cell motility involved in somitogenic axis elongation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 9:101,104,989...101,251,832
Ensembl chr 9:101,105,084...101,251,795
JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdx1 caudal type homeobox 1 IMP (MGI:MGI:5301472|PMID:22015720) UniProtKB PMID:22015720 MGI:MGI:5301472 NCBI chr18:61,018,862...61,036,199
Ensembl chr18:61,018,862...61,036,199
JBrowse link
G Cdx2 caudal type homeobox 2 IMP (MGI:MGI:5301472|PMID:22015720) UniProtKB PMID:22015720 MGI:MGI:5301472 NCBI chr 5:147,300,900...147,307,249
Ensembl chr 5:147,300,805...147,307,270
JBrowse link
G Dll1 delta like canonical Notch ligand 1 IMP (MGI:MGI:5689216|PMID:26114479) UniProtKB PMID:26114479 MGI:MGI:5689216 NCBI chr17:15,367,354...15,376,932
Ensembl chr17:15,367,354...15,376,872
JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 IMP
IGI
(MGI:MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:MGI:3820487 NCBI chr19:25,672,394...25,679,013
Ensembl chr19:25,672,411...25,678,991
JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase IMP
ISO
(MGI:MGI:4367298|PMID:19779553) MGI PMID:19779553 GO_REF:0000096, MGI:MGI:4367298, MGI:MGI:4834177 NCBI chr 5:140,607,341...140,615,545
Ensembl chr 5:140,607,320...140,615,545
JBrowse link
G Notch1 notch 1 IMP (MGI:MGI:72973|PMID:7789282) MGI PMID:7789282 MGI:MGI:72973 NCBI chr 2:26,457,902...26,503,822
Ensembl chr 2:26,457,903...26,516,663
JBrowse link
G Pax3 paired box 3 IGI
IMP
(MGI:MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:MGI:3820487 NCBI chr 1:78,101,267...78,197,136
Ensembl chr 1:78,101,267...78,197,134
JBrowse link
retinoic acid receptor signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 IGI
IMP
(MGI:MGI:3578715|PMID:15889094) MGI PMID:15889094 MGI:MGI:3578715 NCBI chr 9:71,215,789...71,296,243
Ensembl chr 9:71,215,789...71,296,243
JBrowse link
segment specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl2 dishevelled segment polarity protein 2 IMP (MGI:MGI:2389015|PMID:12421720) MGI PMID:12421720 MGI:MGI:2389015 NCBI chr11:70,000,592...70,010,109
Ensembl chr11:70,000,595...70,012,301
JBrowse link
G Hoxa2 homeobox A2 IMP (MGI:MGI:1098901|PMID:9367425) MGI PMID:9367425 MGI:MGI:1098901 NCBI chr 6:52,162,417...52,164,831
Ensembl chr 6:52,162,417...52,164,831
JBrowse link
G Mafb v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) IMP (MGI:MGI:2660991|PMID:12701106) MGI PMID:12701106 MGI:MGI:2660991 NCBI chr 2:160,363,677...160,367,065
Ensembl chr 2:160,363,703...160,367,065
JBrowse link
G Mllt3 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3 IMP (MGI:MGI:2387913|PMID:12242306) MGI PMID:12242306 MGI:MGI:2387913 NCBI chr 4:87,769,925...88,033,407
Ensembl chr 4:87,769,925...88,033,364
JBrowse link
G Msgn1 mesogenin 1 IMP (MGI:MGI:1928575|PMID:11124811) MGI PMID:11124811 MGI:MGI:1928575 NCBI chr12:11,208,382...11,208,948
Ensembl chr12:11,208,360...11,208,972
JBrowse link
G Mtf2 metal response element binding transcription factor 2 IMP (MGI:MGI:4946172|PMID:21059868) UniProtKB PMID:21059868 MGI:MGI:4946172 NCBI chr 5:108,065,660...108,109,219
Ensembl chr 5:108,065,674...108,109,004
JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 IMP (MGI:MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:MGI:3821807 NCBI chr 1:119,545,032...119,649,096
Ensembl chr 1:119,545,037...119,649,000
JBrowse link
G Foxa2 forkhead box A2 IMP (MGI:MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:MGI:2157654 NCBI chr 2:148,042,877...148,046,969
Ensembl chr 2:148,042,877...148,046,969
JBrowse link
G Gdf3 growth differentiation factor 3 IMP (MGI:MGI:3611720|PMID:16368929) MGI PMID:16368929 MGI:MGI:3611720 NCBI chr 6:122,605,403...122,610,087
Ensembl chr 6:122,605,403...122,610,087
JBrowse link
G Kdm6a lysine (K)-specific demethylase 6A IMP (MGI:MGI:5448135|PMID:22949634) MGI PMID:22949634 MGI:MGI:5448135 NCBI chr  X:18,160,862...18,279,936
Ensembl chr  X:18,162,575...18,279,936
JBrowse link
G Lhx1 LIM homeobox protein 1 IMP (MGI:MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:MGI:2157654 NCBI chr11:84,517,975...84,525,534
Ensembl chr11:84,518,284...84,525,535
JBrowse link
G Mesp1 mesoderm posterior 1 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 7:79,792,241...79,793,590
Ensembl chr 7:79,792,241...79,793,788
JBrowse link
G Mesp2 mesoderm posterior 2 IMP
IBA
(MGI:MGI:4459001|PMID:20346937)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:20346937, PMID:21873635 MGI:MGI:4459001, MGI:MGI:6201960 NCBI chr 7:79,810,727...79,813,431
Ensembl chr 7:79,810,727...79,813,439
JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein IMP (MGI:MGI:5438472|PMID:21998026) MGI PMID:21998026 MGI:MGI:5438472 NCBI chr 2:25,180,758...25,183,339
Ensembl chr 2:25,180,758...25,183,339
JBrowse link
G Otx2 orthodenticle homeobox 2 IMP (MGI:MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:MGI:2157654 NCBI chr14:48,656,781...48,667,644
Ensembl chr14:48,657,677...48,673,819
JBrowse link
G Ripply1 ripply transcriptional repressor 1 IGI (MGI:MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:MGI:4459001 NCBI chr  X:139,779,681...139,782,353
Ensembl chr  X:139,779,549...139,782,353
JBrowse link
G Ripply2 ripply transcriptional repressor 2 IGI
IDA
(MGI:MGI:4459001|PMID:20346937)
(MGI:MGI:3613215|PMID:16326386)
MGI
UniProtKB
PMID:16326386, PMID:20346937 MGI:MGI:3613215, MGI:MGI:4459001 NCBI chr 9:87,015,537...87,020,441
Ensembl chr 9:87,015,537...87,019,917
JBrowse link
G Smad4 SMAD family member 4 IMP (MGI:MGI:1195384|PMID:9420335) MGI PMID:9420335 MGI:MGI:1195384 NCBI chr18:73,634,790...73,703,791
Ensembl chr18:73,639,009...73,703,780
JBrowse link
G Tbx6 T-box 6 IDA (MGI:MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:MGI:4459001 NCBI chr 7:126,781,483...126,785,548
Ensembl chr 7:126,781,483...126,785,560
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 IMP (MGI:MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:MGI:4453264 NCBI chr 5:124,540,791...124,550,503
Ensembl chr 5:124,540,695...124,550,506
JBrowse link
somite specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cobl cordon-bleu WH2 repeat IEP (PMID:7586755) BHF-UCL PMID:7586755 NCBI chr11:12,236,676...12,465,022
Ensembl chr11:12,236,608...12,464,960
JBrowse link
G Dll1 delta like canonical Notch ligand 1 IMP (MGI:MGI:3034157|PMID:14960495) MGI PMID:14960495 MGI:MGI:3034157 NCBI chr17:15,367,354...15,376,932
Ensembl chr17:15,367,354...15,376,872
JBrowse link
G Meox1 mesenchyme homeobox 1 IGI (MGI:MGI:2669571|PMID:12925591) MGI PMID:12925591 MGI:MGI:2669571 NCBI chr11:101,877,510...101,894,354
Ensembl chr11:101,877,510...101,894,374
JBrowse link
G Meox2 mesenchyme homeobox 2 IGI (MGI:MGI:2669571|PMID:12925591) MGI PMID:12925591 MGI:MGI:2669571 NCBI chr12:37,108,540...37,179,534
Ensembl chr12:37,108,540...37,179,534
JBrowse link
somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi1 abl-interactor 1 IMP (MGI:MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:MGI:3577662 NCBI chr 2:22,940,073...23,040,241
Ensembl chr 2:22,940,073...23,040,241
JBrowse link
G Atm ataxia telangiectasia mutated IGI (MGI:MGI:3624894|PMID:16687486) MGI PMID:16687486 MGI:MGI:3624894 NCBI chr 9:53,437,122...53,536,828
Ensembl chr 9:53,439,149...53,536,740
JBrowse link
G Axin2 axin 2 IDA (MGI:MGI:3037351|PMID:12636920) MGI PMID:12636920 MGI:MGI:3037351 NCBI chr11:108,917,828...108,950,783
Ensembl chr11:108,920,349...108,950,783
JBrowse link
G Bmpr1a bone morphogenetic protein receptor, type 1A IMP (MGI:MGI:3702797|PMID:16943278) MGI PMID:16943278 MGI:MGI:3702797 NCBI chr14:34,411,061...34,503,336
Ensembl chr14:34,410,734...34,503,341
JBrowse link
G Crb2 crumbs family member 2 IMP (MGI:MGI:5296388|PMID:22072575) UniProtKB PMID:22072575 MGI:MGI:5296388 NCBI chr 2:37,776,225...37,799,103
Ensembl chr 2:37,776,249...37,799,103
JBrowse link
G Dll1 delta like canonical Notch ligand 1 IGI
IMP
(MGI:MGI:3578712|PMID:15902259)
(MGI:MGI:5545944|PMID:23072809)
MGI
UniProtKB
PMID:15902259, PMID:23072809 MGI:MGI:3578712, MGI:MGI:5545944 NCBI chr17:15,367,354...15,376,932
Ensembl chr17:15,367,354...15,376,872
JBrowse link
G Dll3 delta like canonical Notch ligand 3 IDA
IMP
(MGI:MGI:1095777|PMID:9272948)
(MGI:MGI:3620337|PMID:15170697)
MGI PMID:9272948, PMID:15170697 MGI:MGI:1095777, MGI:MGI:3620337 NCBI chr 7:28,293,555...28,301,785
Ensembl chr 7:28,293,553...28,302,238
JBrowse link
G Ep300 E1A binding protein p300 IGI (MGI:MGI:3583034|PMID:15937931) MGI PMID:15937931 MGI:MGI:3583034 NCBI chr15:81,586,209...81,652,077
Ensembl chr15:81,585,351...81,652,077
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 IMP (MGI:MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:MGI:3821807 NCBI chr 1:119,545,032...119,649,096
Ensembl chr 1:119,545,037...119,649,000
JBrowse link
G Foxb1 forkhead box B1 IMP (MGI:MGI:3771770|PMID:18064677) UniProtKB PMID:18064677 MGI:MGI:3771770 NCBI chr 9:69,757,710...69,760,940
Ensembl chr 9:69,757,710...69,760,940
JBrowse link
G Foxc1 forkhead box C1 IGI (MGI:MGI:2150572|PMID:11562355) UniProtKB PMID:11562355 MGI:MGI:2150572 NCBI chr13:31,806,646...31,810,635
Ensembl chr13:31,806,633...31,812,476
JBrowse link
G Foxc2 forkhead box C2 IGI (MGI:MGI:2150572|PMID:11562355) UniProtKB PMID:11562355 MGI:MGI:2150572 NCBI chr 8:121,116,171...121,118,895
Ensembl chr 8:121,116,171...121,118,895
JBrowse link
G Foxf1 forkhead box F1 IMP (MGI:MGI:1928688|PMID:11124112) MGI PMID:11124112 MGI:MGI:1928688 NCBI chr 8:121,084,386...121,088,154
Ensembl chr 8:121,084,386...121,088,144
JBrowse link
G Hes7 hes family bHLH transcription factor 7 IMP (MGI:MGI:3046002|PMID:15170214)
(MGI:MGI:2152470|PMID:11641270), (MGI:MGI:4367298|PMID:19779553)
MGI PMID:11641270, PMID:15170214, PMID:19779553 MGI:MGI:2152470, MGI:MGI:3046002, MGI:MGI:4367298 NCBI chr11:69,118,906...69,124,054
Ensembl chr11:69,120,404...69,124,055
JBrowse link
G Ifitm1 interferon induced transmembrane protein 1 IMP (MGI:MGI:3578569|PMID:15857914) MGI PMID:15857914 MGI:MGI:3578569 NCBI chr 7:140,967,429...140,969,827
Ensembl chr 7:140,967,221...140,969,825
JBrowse link
G Kat2a K(lysine) acetyltransferase 2A IMP
IGI
(MGI:MGI:3709911|PMID:17325035)
(MGI:MGI:3583034|PMID:15937931)
MGI PMID:15937931, PMID:17325035 MGI:MGI:3583034, MGI:MGI:3709911 NCBI chr11:100,704,746...100,712,485
Ensembl chr11:100,704,746...100,712,465
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 IGI
IMP
(MGI:MGI:1334099|PMID:10090727)
(MGI:MGI:3510574|PMID:15545629)
MGI PMID:10090727, PMID:15545629 MGI:MGI:1334099, MGI:MGI:3510574 NCBI chr 3:131,110,297...131,224,357
Ensembl chr 3:131,110,471...131,224,356
JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase IMP (MGI:MGI:3774705|PMID:18234727)
(MGI:MGI:5545944|PMID:23072809)
MGI
UniProtKB
PMID:18234727, PMID:23072809 MGI:MGI:3774705, MGI:MGI:5545944 NCBI chr 5:140,607,341...140,615,545
Ensembl chr 5:140,607,320...140,615,545
JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 IGI (MGI:MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:MGI:4413372 NCBI chr 6:134,446,476...134,566,913
Ensembl chr 6:134,446,476...134,566,965
JBrowse link
G Med12 mediator complex subunit 12 IMP (MGI:MGI:4839544|PMID:20589884) MGI PMID:20589884 MGI:MGI:4839544 NCBI chr  X:101,274,091...101,298,934
Ensembl chr  X:101,274,030...101,297,465
JBrowse link
G Mesp2 mesoderm posterior 2 IMP
IGI
(MGI:MGI:3578712|PMID:15902259) MGI PMID:15902259 MGI:MGI:3578712 NCBI chr 7:79,810,727...79,813,431
Ensembl chr 7:79,810,727...79,813,439
JBrowse link
G Mib1 mindbomb E3 ubiquitin protein ligase 1 IMP (MGI:MGI:3603078|PMID:16000382) MGI PMID:16000382 MGI:MGI:3603078 NCBI chr18:10,725,625...10,818,578
Ensembl chr18:10,725,548...10,818,704
JBrowse link
G Msgn1 mesogenin 1 IMP (MGI:MGI:1928575|PMID:11124811), (MGI:MGI:5545970|PMID:21750544) MGI PMID:11124811, PMID:21750544 MGI:MGI:1928575, MGI:MGI:5545970 NCBI chr12:11,208,382...11,208,948
Ensembl chr12:11,208,360...11,208,972
JBrowse link
G Myf5 myogenic factor 5 IMP (MGI:MGI:1861090|PMID:10929709)
(MGI:MGI:78390|PMID:8565825)
(MGI:MGI:3849775|PMID:19531352)
MGI PMID:8565825, PMID:10929709, PMID:19531352 MGI:MGI:1861090, MGI:MGI:3849775, MGI:MGI:78390 NCBI chr10:107,482,908...107,486,927
Ensembl chr10:107,482,908...107,486,134
JBrowse link
G Myf6 myogenic factor 6 IMP (MGI:MGI:76810|PMID:7588068) MGI PMID:7588068 MGI:MGI:76810 NCBI chr10:107,492,848...107,494,723
Ensembl chr10:107,492,853...107,494,737
JBrowse link
G Nckap1 NCK-associated protein 1 IMP (MGI:MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:MGI:3701029 NCBI chr 2:80,500,512...80,581,182
Ensembl chr 2:80,500,512...80,581,380
JBrowse link
G Nkx3-1 NK3 homeobox 1 IEP (PMID:9621431) BHF-UCL PMID:9621431 NCBI chr14:69,190,692...69,194,658
Ensembl chr14:69,190,638...69,194,662
JBrowse link
G Nle1 notchless homolog 1 IMP (MGI:MGI:5608942|PMID:24875805) MGI PMID:24875805 MGI:MGI:5608942 NCBI chr11:82,900,768...82,908,446
Ensembl chr11:82,900,768...82,908,411
JBrowse link
G Palb2 partner and localizer of BRCA2 IMP (MGI:MGI:4459579|PMID:20484223) MGI PMID:20484223 MGI:MGI:4459579 NCBI chr 7:122,107,262...122,132,980
Ensembl chr 7:122,107,262...122,132,985
JBrowse link
G Pax1 paired box 1 IMP (MGI:MGI:3590033|PMID:16093716) MGI PMID:16093716 MGI:MGI:3590033 NCBI chr 2:147,361,930...147,375,049
Ensembl chr 2:147,361,925...147,393,295
JBrowse link
G Pcdh8 protocadherin 8 IMP (MGI:MGI:2451199|PMID:12591245) MGI PMID:12591245 MGI:MGI:2451199 NCBI chr14:79,766,772...79,771,312
Ensembl chr14:79,766,775...79,771,312
JBrowse link
G Plxna2 plexin A2 IEP (PMID:19666519) BHF-UCL PMID:19666519 NCBI chr 1:194,619,791...194,816,869
Ensembl chr 1:194,618,218...194,816,869
JBrowse link
G Pofut1 protein O-fucosyltransferase 1 IMP (MGI:MGI:2660984|PMID:12697902) MGI PMID:12697902 MGI:MGI:2660984 NCBI chr 2:153,241,532...153,271,029
Ensembl chr 2:153,241,533...153,270,247
JBrowse link
G Poglut1 protein O-glucosyltransferase 1 IMP (MGI:MGI:1267118|PMID:9636176) MGI PMID:9636176 MGI:MGI:1267118 NCBI chr16:38,525,058...38,550,257
Ensembl chr16:38,525,137...38,550,258
JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide IGI (MGI:MGI:3624894|PMID:16687486) MGI PMID:16687486 MGI:MGI:3624894 NCBI chr16:15,637,444...15,842,239
Ensembl chr16:15,637,866...15,842,235
JBrowse link
G Psen1 presenilin 1 IMP
IGI
(MGI:MGI:87649|PMID:9153393)
(MGI:MGI:1347695|PMID:10557208), (MGI:MGI:4367298|PMID:19779553)
MGI PMID:9153393, PMID:10557208, PMID:19779553 MGI:MGI:1347695, MGI:MGI:4367298, MGI:MGI:87649 NCBI chr12:83,688,152...83,735,095
Ensembl chr12:83,688,152...83,735,199
JBrowse link
G Psen2 presenilin 2 IGI (MGI:MGI:1347695|PMID:10557208), (MGI:MGI:4367298|PMID:19779553) MGI PMID:10557208, PMID:19779553 MGI:MGI:1347695, MGI:MGI:4367298 NCBI chr 1:180,227,004...180,263,467
Ensembl chr 1:180,227,004...180,263,438
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region TAS
IMP
(MGI:MGI:3056004|PMID:15466160)
(MGI:MGI:4367298|PMID:19779553)
BHF-UCL
MGI
PMID:15466160, PMID:19779553 MGI:MGI:3056004, MGI:MGI:4367298 NCBI chr 5:53,555,779...53,657,445
Ensembl chr 5:53,466,152...53,657,362
JBrowse link
G Ripply2 ripply transcriptional repressor 2 IMP
IDA
(MGI:MGI:3715395|PMID:17531978)
(MGI:MGI:3613215|PMID:16326386)
MGI
UniProtKB
PMID:16326386, PMID:17531978 MGI:MGI:3613215, MGI:MGI:3715395 NCBI chr 9:87,015,537...87,020,441
Ensembl chr 9:87,015,537...87,019,917
JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 IMP (MGI:MGI:3037488|PMID:14745966) MGI PMID:14745966 MGI:MGI:3037488 NCBI chr13:53,109,317...53,286,124
Ensembl chr13:53,109,312...53,286,124
JBrowse link
G Sema3c sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C IEP (PMID:19666519) BHF-UCL PMID:19666519 NCBI chr 5:17,574,816...17,730,268
Ensembl chr 5:17,574,281...17,730,268
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 IGI
IEP
(MGI:MGI:3618960|PMID:16467359)
(PMID:10654605)
MGI
BHF-UCL
PMID:10654605, PMID:16467359 MGI:MGI:3618960 NCBI chr 8:23,411,383...23,449,632
Ensembl chr 8:23,411,502...23,449,632
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 IGI (MGI:MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:MGI:3618960 NCBI chr 3:83,765,750...83,774,314
Ensembl chr 3:83,766,321...83,774,316
JBrowse link
G Smad3 SMAD family member 3 IMP (MGI:MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:MGI:3618021 NCBI chr 9:63,646,766...63,757,994
Ensembl chr 9:63,646,767...63,757,994
JBrowse link
G T brachyury, T-box transcription factor T IMP
IBA
(MGI:MGI:64493|PMID:8293872)
(MGI:MGI:6201960|PMID:21873635)
(MGI:MGI:3701028|PMID:16835439)
(MGI:MGI:3056222|PMID:15384171)
MGI
GO_Central
PMID:8293872, PMID:15384171, PMID:16835439, PMID:21873635 MGI:MGI:3056222, MGI:MGI:3701028, MGI:MGI:6201960, MGI:MGI:64493 NCBI chr17:8,434,423...8,442,496
Ensembl chr17:8,434,423...8,442,496
JBrowse link
G Tbx18 T-box18 IMP
IBA
(MGI:MGI:3044041|PMID:15155583)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:15155583, PMID:21873635 MGI:MGI:3044041, MGI:MGI:6201960 NCBI chr 9:87,702,800...87,731,260
Ensembl chr 9:87,702,800...87,731,260
JBrowse link
G Tbx19 T-box 19 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 1:165,137,834...165,160,773
Ensembl chr 1:165,137,855...165,160,773
JBrowse link
G Tcap titin-cap IEP (PMID:9817758) BHF-UCL PMID:9817758 NCBI chr11:98,383,811...98,384,953
Ensembl chr11:98,383,811...98,384,953
JBrowse link
G Tcf15 transcription factor 15 IMP (MGI:MGI:84545|PMID:8955271) MGI PMID:8955271 MGI:MGI:84545 NCBI chr 2:152,143,056...152,149,097
Ensembl chr 2:152,143,561...152,149,097
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 IMP (MGI:MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:MGI:4453264 NCBI chr 5:124,540,791...124,550,503
Ensembl chr 5:124,540,695...124,550,506
JBrowse link
G Trp53 transformation related protein 53 IGI (MGI:MGI:3709913|PMID:17320900) MGI PMID:17320900 MGI:MGI:3709913 NCBI chr11:69,580,348...69,591,873
Ensembl chr11:69,580,359...69,591,873
JBrowse link
G Ttn titin IEP (PMID:9817758) BHF-UCL PMID:9817758 NCBI chr 2:76,703,980...76,982,557
Ensembl chr 2:76,703,980...76,982,547
JBrowse link
G Wnt3a wingless-type MMTV integration site family, member 3A IMP (MGI:MGI:3037351|PMID:12636920)
(MGI:MGI:3611726|PMID:16291790), (MGI:MGI:64780|PMID:8299937)
MGI PMID:8299937, PMID:12636920, PMID:16291790 MGI:MGI:3037351, MGI:MGI:3611726, MGI:MGI:64780 NCBI chr11:59,248,036...59,290,751
Ensembl chr11:59,248,033...59,290,752
JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A IGI (MGI:MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:MGI:4413372 NCBI chr14:28,504,543...28,527,448
Ensembl chr14:28,504,750...28,527,448
JBrowse link
G Xrcc2 X-ray repair complementing defective repair in Chinese hamster cells 2 IMP (MGI:MGI:3708426|PMID:17116431) MGI PMID:17116431 MGI:MGI:3708426 NCBI chr 5:25,689,814...25,705,797
Ensembl chr 5:25,689,812...25,705,825
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 IMP (MGI:MGI:3590396|PMID:16157277), (MGI:MGI:3624924|PMID:16598713) MGI PMID:16157277, PMID:16598713 MGI:MGI:3590396, MGI:MGI:3624924 NCBI chr 2:44,983,512...45,117,442
Ensembl chr 2:44,983,632...45,117,395
JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 IMP (MGI:MGI:3697513|PMID:16790474) UniProtKB PMID:16790474 MGI:MGI:3697513 NCBI chr12:9,574,442...9,581,500
Ensembl chr12:9,570,116...9,581,500
JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 IEP (PMID:15821257) UniProtKB PMID:15821257 NCBI chr 4:154,960,626...154,962,372
Ensembl chr 4:154,960,923...154,962,371
JBrowse link
G Irx1 Iroquois homeobox 1 IEP (PMID:17875669) UniProtKB PMID:17875669 NCBI chr13:71,958,232...71,963,723
Ensembl chr13:71,957,921...71,963,723
JBrowse link
G Irx2 Iroquois homeobox 2 IEP (PMID:17875669) UniProtKB PMID:17875669 NCBI chr13:72,624,430...72,634,196
Ensembl chr13:72,628,820...72,634,198
JBrowse link
G Irx3 Iroquois related homeobox 3 IEP (PMID:17875669) UniProtKB PMID:17875669 NCBI chr 8:91,798,511...91,801,654
Ensembl chr 8:91,798,525...91,802,067
JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 IMP (MGI:MGI:3697513|PMID:16790474) UniProtKB PMID:16790474 MGI:MGI:3697513 NCBI chr12:9,574,442...9,581,500
Ensembl chr12:9,570,116...9,581,500
JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurog1 neurogenin 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:56,250,478...56,252,180
Ensembl chr13:56,250,478...56,252,163
JBrowse link
G Tifab TRAF-interacting protein with forkhead-associated domain, family member B ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:56,173,703...56,179,002
Ensembl chr13:56,173,704...56,178,885
JBrowse link
G Wt1 Wilms tumor 1 homolog IMP (MGI:MGI:62488|PMID:8395349) UniProtKB PMID:8395349 MGI:MGI:62488 NCBI chr 2:105,126,529...105,173,614
Ensembl chr 2:105,126,529...105,173,616
JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 IMP (MGI:MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:MGI:3848580 NCBI chr 8:128,358,591...128,505,476
Ensembl chr 8:128,358,604...128,503,363
JBrowse link
G Nrp2 neuropilin 2 IMP (MGI:MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:MGI:3848580 NCBI chr 1:62,703,317...62,818,692
Ensembl chr 1:62,703,285...62,818,695
JBrowse link
G Sema3a sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A IMP (MGI:MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:MGI:3848580 NCBI chr 5:13,124,822...13,603,485
Ensembl chr 5:13,125,414...13,602,565
JBrowse link
G Sema3f sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F IMP (MGI:MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:MGI:3848580 NCBI chr 9:107,681,499...107,710,475
Ensembl chr 9:107,681,500...107,710,475
JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 IGI (MGI:MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:MGI:3793375 NCBI chr19:30,545,876...30,549,496
Ensembl chr19:30,545,863...30,549,665
JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 IMP
IBA
(MGI:MGI:3055483|PMID:15469977)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:15469977, PMID:21873635 MGI:MGI:3055483, MGI:MGI:6201960 NCBI chr 6:134,446,476...134,566,913
Ensembl chr 6:134,446,476...134,566,965
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 IGI (MGI:MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:MGI:3793375 NCBI chr 8:23,411,383...23,449,632
Ensembl chr 8:23,411,502...23,449,632
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 IGI (MGI:MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:MGI:3793375 NCBI chr 3:83,765,750...83,774,314
Ensembl chr 3:83,766,321...83,774,316
JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK-associated protein 1 IMP (MGI:MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:MGI:3701029 NCBI chr 2:80,500,512...80,581,182
Ensembl chr 2:80,500,512...80,581,380
JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 IMP
IGI
(MGI:MGI:1858546|PMID:10809672) MGI PMID:10809672 MGI:MGI:1858546 NCBI chr 7:65,862,136...66,050,386
Ensembl chr 7:65,861,734...66,050,386
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23369
    multicellular organismal process 8893
      pattern specification process 483
        regionalization 382
          segmentation 107
            appendage segmentation + 0
            blastoderm segmentation + 19
            brain segmentation 3
            central nervous system segmentation + 3
            renal system segmentation + 1
            segment specification + 15
            somitogenesis + 77
            trunk segmentation + 4
Path 2
Term Annotations click to browse term
  biological_process 23369
    developmental process 7016
      anatomical structure development 6488
        multicellular organism development 5954
          pattern specification process 483
            regionalization 382
              segmentation 107
                appendage segmentation + 0
                blastoderm segmentation + 19
                brain segmentation 3
                central nervous system segmentation + 3
                renal system segmentation + 1
                segment specification + 15
                somitogenesis + 77
                trunk segmentation + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.