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ONTOLOGY REPORT - ANNOTATIONS


Term:segmentation
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Accession:GO:0035282 term browser browse the term
Definition:The regionalization process that divides an organism or part of an organism into a series of semi-repetitive parts, or segments, often arranged along a longitudinal axis.
Synonyms:xref: Wikipedia:Segmentation_(biology)


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segmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACD ACD shelterin complex subunit and telomerase recruitment factor IEA Ensembl GO_REF:0000107 NCBI chr 6:28,277,649...28,280,409
Ensembl chr 6:28,277,611...28,280,405
JBrowse link
G DVL2 dishevelled segment polarity protein 2 ISO (MGI:MGI:82989|PMID:8887313) BHF-UCL PMID:8887313 MGI:MGI:82989 NCBI chr12:52,581,687...52,590,266
Ensembl chr12:52,579,765...52,590,292
JBrowse link
G PSEN1 presenilin 1 ISO (MGI:MGI:1931803|PMID:11262239)
(MGI:MGI:3587130|PMID:16079160)
MGI PMID:11262239, PMID:16079160 MGI:MGI:1931803, MGI:MGI:3587130 NCBI chr 7:96,478,179...96,567,884
Ensembl chr 7:96,478,181...96,569,132
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FRS2 fibroblast growth factor receptor substrate 2 IEA Ensembl GO_REF:0000107 NCBI chr 5:33,725,432...33,852,952
Ensembl chr 5:33,725,444...33,849,976
JBrowse link
G FZD5 frizzled class receptor 5 IEA Ensembl GO_REF:0000107 NCBI chr15:110,913,990...110,921,388
Ensembl chr15:110,911,567...110,921,353
JBrowse link
G TASOR transcription activation suppressor IEA Ensembl GO_REF:0000107 NCBI chr13:38,491,048...38,557,256
Ensembl chr13:38,491,055...38,557,931
JBrowse link
G TBX3 T-box transcription factor 3 IEA Ensembl GO_REF:0000107 NCBI chr14:37,582,704...37,596,767
Ensembl chr14:37,582,822...37,596,767
JBrowse link
G TCF7L1 transcription factor 7 like 1 ISO (MGI:MGI:3043490|PMID:14668413) MGI PMID:14668413 MGI:MGI:3043490 NCBI chr 3:59,438,152...59,458,988 JBrowse link
G TDGF1 teratocarcinoma-derived growth factor 1 ISO (MGI:MGI:1303194|PMID:9790191) MGI PMID:9790191 MGI:MGI:1303194 NCBI chr13:29,537,874...29,544,686
Ensembl chr13:29,540,314...29,543,893
JBrowse link
G WNT5A Wnt family member 5A IEA Ensembl GO_REF:0000107 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 ISO (MGI:MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:MGI:1891551 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,689
JBrowse link
G MED12 mediator complex subunit 12 IEA Ensembl GO_REF:0000107 NCBI chr  X:57,150,884...57,174,367
Ensembl chr  X:57,150,578...57,175,352
JBrowse link
G WNT3A Wnt family member 3A IEA Ensembl GO_REF:0000107 NCBI chr 2:51,153,978...51,203,678
Ensembl chr 2:51,154,086...51,202,176
JBrowse link
BMP signaling pathway involved in renal system segmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 IEA Ensembl GO_REF:0000107 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,134...183,792,417
JBrowse link
brain segmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGR2 early growth response 2 IEA Ensembl GO_REF:0000107 NCBI chr14:66,280,665...66,291,308
Ensembl chr14:66,284,577...66,291,306
JBrowse link
G HOXA2 homeobox A2 IEA Ensembl GO_REF:0000107 NCBI chr18:45,470,079...45,473,345
Ensembl chr18:45,470,419...45,473,347
JBrowse link
G MAFB MAF bZIP transcription factor B ISO (MGI:MGI:67780|PMID:7925021) MGI PMID:7925021 MGI:MGI:67780 NCBI chr17:43,408,390...43,411,782 JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SFRP1 secreted frizzled related protein 1 IEA Ensembl GO_REF:0000107 NCBI chr17:10,436,414...10,489,773
Ensembl chr17:10,436,426...10,489,748
JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase IEA Ensembl GO_REF:0000107 NCBI chr 3:1,721,044...1,819,426
Ensembl chr 3:1,810,892...1,820,048
JBrowse link
G NRARP NOTCH regulated ankyrin repeat protein IEA Ensembl GO_REF:0000107
P granule organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLD6 phospholipase D family member 6 IEA Ensembl GO_REF:0000107 NCBI chr12:61,057,896...61,060,681
Ensembl chr12:61,057,944...61,060,679
JBrowse link
G TDRD5 tudor domain containing 5 IEA Ensembl GO_REF:0000107 NCBI chr 9:121,245,080...121,337,339
Ensembl chr 9:121,211,324...121,332,219
JBrowse link
pole plasm assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WDR77 WD repeat domain 77 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:108,907,192...108,915,594
Ensembl chr 4:108,907,332...108,941,037
JBrowse link
regulation of cell motility involved in somitogenic axis elongation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr13:76,945,318...77,148,521
Ensembl chr13:76,945,358...77,147,531
JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDX1 caudal type homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:151,202,842...151,217,132
Ensembl chr 2:151,202,807...151,222,047
JBrowse link
G CDX2 caudal type homeobox 2 IEA Ensembl GO_REF:0000107 NCBI chr11:5,339,727...5,346,081
Ensembl chr11:5,339,716...5,346,057
JBrowse link
G DLL1 delta like canonical Notch ligand 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:198,815...211,346
Ensembl chr 1:199,231...211,344
JBrowse link
G DMRT2 doublesex and mab-3 related transcription factor 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:220,745,493...220,799,779
Ensembl chr 1:220,745,492...220,757,313
JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISO (PMID:19061953)
(MGI:MGI:4367298|PMID:19779553)
UniProtKB
MGI
PMID:19061953, PMID:19779553 MGI:MGI:4367298 NCBI chr 3:1,721,044...1,819,426
Ensembl chr 3:1,810,892...1,820,048
JBrowse link
G NOTCH1 notch receptor 1 IEA Ensembl GO_REF:0000107
G PAX3 paired box 3 ISO (MGI:MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:MGI:3820487 NCBI chr15:124,093,803...124,193,041
Ensembl chr15:124,095,224...124,193,011
JBrowse link
retinoic acid receptor signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 IEA Ensembl GO_REF:0000107 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,715,620...114,037,249
JBrowse link
segment specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DVL2 dishevelled segment polarity protein 2 IEA Ensembl GO_REF:0000107 NCBI chr12:52,581,687...52,590,266
Ensembl chr12:52,579,765...52,590,292
JBrowse link
G HOXA2 homeobox A2 IEA Ensembl GO_REF:0000107 NCBI chr18:45,470,079...45,473,345
Ensembl chr18:45,470,419...45,473,347
JBrowse link
G MAFB MAF bZIP transcription factor B ISO (MGI:MGI:2660991|PMID:12701106) MGI PMID:12701106 MGI:MGI:2660991 NCBI chr17:43,408,390...43,411,782 JBrowse link
G MLLT3 MLLT3 super elongation complex subunit IEA Ensembl GO_REF:0000107 NCBI chr 1:202,317,458...202,604,308
Ensembl chr 1:202,317,453...202,607,061
JBrowse link
G MSGN1 mesogenin 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:120,033,980...120,034,624
Ensembl chr 3:120,034,043...120,034,624
JBrowse link
G MTF2 metal response element binding transcription factor 2 IEA Ensembl GO_REF:0000107 NCBI chr 4:124,051,586...124,124,440
Ensembl chr 4:124,050,097...124,124,438
JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 IEA Ensembl GO_REF:0000107 NCBI chr15:31,159,214...31,295,891
Ensembl chr15:31,159,217...31,295,896
JBrowse link
G FOXA2 forkhead box A2 ISO (MGI:MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:MGI:2157654 NCBI chr17:29,997,397...30,001,704
Ensembl chr17:29,997,400...30,001,707
JBrowse link
G GDF3 growth differentiation factor 3 IEA Ensembl GO_REF:0000107 NCBI chr 5:62,835,926...62,841,827
Ensembl chr 5:62,835,979...62,841,665
JBrowse link
G KDM6A lysine demethylase 6A ISO (MGI:MGI:5448135|PMID:22949634) MGI PMID:22949634 MGI:MGI:5448135 NCBI chr  X:39,953,764...40,154,197
Ensembl chr  X:39,953,759...40,154,194
JBrowse link
G LHX1 LIM homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr12:38,450,708...38,457,583
Ensembl chr12:38,450,708...38,456,139
JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:55,322,016...55,327,600
Ensembl chr 7:55,322,010...55,325,732
JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:55,341,941...55,345,824
Ensembl chr 7:55,343,134...55,345,904
JBrowse link
G NRARP NOTCH regulated ankyrin repeat protein IEA Ensembl GO_REF:0000107
G OTX2 orthodenticle homeobox 2 ISO (MGI:MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:MGI:2157654 NCBI chr 1:186,028,575...186,039,026
Ensembl chr 1:186,028,575...186,038,229
JBrowse link
G RIPPLY1 ripply transcriptional repressor 1 ISO (MGI:MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:MGI:4459001 NCBI chr  X:87,315,355...87,319,580
Ensembl chr  X:87,315,352...87,319,583
JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:82,427,956...82,432,844
Ensembl chr 1:82,423,391...82,432,638
JBrowse link
G SMAD4 SMAD family member 4 IEA Ensembl GO_REF:0000107 NCBI chr 1:100,521,843...100,633,501
Ensembl chr 1:100,514,791...100,628,029
JBrowse link
G TBX6 T-box transcription factor 6 IEA Ensembl GO_REF:0000107 NCBI chr 3:18,271,983...18,277,864
Ensembl chr 3:18,271,984...18,277,573
JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 ISO (MGI:MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:MGI:4453264 NCBI chr14:29,390,903...29,400,454
Ensembl chr14:29,390,335...29,400,437
JBrowse link
somite specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COBL cordon-bleu WH2 repeat protein ISO (PMID:7586755) BHF-UCL PMID:7586755 NCBI chr 9:136,850,521...137,055,249 JBrowse link
G DLL1 delta like canonical Notch ligand 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:198,815...211,346
Ensembl chr 1:199,231...211,344
JBrowse link
G MEOX1 mesenchyme homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr12:19,431,397...19,452,430
Ensembl chr12:19,431,029...19,452,007
JBrowse link
G MEOX2 mesenchyme homeobox 2 IEA Ensembl GO_REF:0000107 NCBI chr 9:84,945,178...85,009,939
Ensembl chr 9:84,943,197...85,010,157
JBrowse link
somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI1 abl interactor 1 IEA Ensembl GO_REF:0000107 NCBI chr10:48,939,407...49,069,269
Ensembl chr10:48,939,445...49,069,445
JBrowse link
G ATM ATM serine/threonine kinase IEA Ensembl GO_REF:0000107 NCBI chr 9:36,620,656...36,759,555
Ensembl chr 9:36,620,658...36,759,554
JBrowse link
G AXIN2 axin 2 IEA Ensembl GO_REF:0000107 NCBI chr12:12,311,293...12,343,207
Ensembl chr12:12,311,293...12,343,200
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A IEA Ensembl GO_REF:0000107 NCBI chr14:87,743,270...87,891,790
Ensembl chr14:87,742,459...87,891,793
JBrowse link
G CRB2 crumbs cell polarity complex component 2 ISS UniProt GO_REF:0000024 NCBI chr 1:264,277,549...264,301,731
Ensembl chr 1:264,276,572...264,301,725
JBrowse link
G DLL1 delta like canonical Notch ligand 1 ISO (MGI:MGI:5545944|PMID:23072809)
(MGI:MGI:3578712|PMID:15902259)
UniProtKB
MGI
PMID:15902259, PMID:23072809 MGI:MGI:3578712, MGI:MGI:5545944 NCBI chr 1:198,815...211,346
Ensembl chr 1:199,231...211,344
JBrowse link
G DLL3 delta like canonical Notch ligand 3 IEA Ensembl GO_REF:0000107 NCBI chr 6:48,135,738...48,155,373
Ensembl chr 6:48,147,730...48,155,373
JBrowse link
G EP300 E1A binding protein p300 IEA Ensembl GO_REF:0000107 NCBI chr 5:7,311,165...7,394,515
Ensembl chr 5:7,311,171...7,393,760
JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 ISO (MGI:MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:MGI:3821807 NCBI chr15:31,159,214...31,295,891
Ensembl chr15:31,159,217...31,295,896
JBrowse link
G FOXB1 forkhead box B1 IEA Ensembl GO_REF:0000107 NCBI chr 1:111,997,638...112,000,550
Ensembl chr 1:111,997,640...112,000,550
JBrowse link
G FOXC1 forkhead box C1 IEA Ensembl GO_REF:0000107 NCBI chr 7:837,088...840,593
Ensembl chr 7:837,171...838,805
JBrowse link
G FOXC2 forkhead box C2 IEA Ensembl GO_REF:0000107 NCBI chr 6:2,552,141...2,555,041
Ensembl chr 6:2,552,862...2,554,367
JBrowse link
G FOXF1 forkhead box F1 IEA Ensembl GO_REF:0000107 NCBI chr 6:2,579,348...2,598,122
Ensembl chr 6:2,592,993...2,597,659
JBrowse link
G HES7 hes family bHLH transcription factor 7 IEA Ensembl GO_REF:0000107 NCBI chr12:53,334,350...53,339,336
Ensembl chr12:53,334,901...53,337,376
JBrowse link
G KAT2A lysine acetyltransferase 2A IEA Ensembl GO_REF:0000107 NCBI chr12:20,638,493...20,647,464
Ensembl chr12:20,638,493...20,647,463
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 8:113,824,511...113,944,078
Ensembl chr 8:113,824,547...113,944,078
JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase IEA Ensembl GO_REF:0000107 NCBI chr 3:1,721,044...1,819,426
Ensembl chr 3:1,810,892...1,820,048
JBrowse link
G LOC100155738 protocadherin-8 IEA Ensembl GO_REF:0000107 NCBI chr11:26,127,398...26,133,481
Ensembl chr11:26,127,399...26,132,123
JBrowse link
G LOC102161418 interferon-induced transmembrane protein 1-like ISO (MGI:MGI:3578569|PMID:15857914) MGI PMID:15857914 MGI:MGI:3578569 NCBI chr 2:156,364...157,650 JBrowse link
G LRP6 LDL receptor related protein 6 ISO (MGI:MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:MGI:4413372 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,689
JBrowse link
G MED12 mediator complex subunit 12 ISO (MGI:MGI:4839544|PMID:20589884) MGI PMID:20589884 MGI:MGI:4839544 NCBI chr  X:57,150,884...57,174,367
Ensembl chr  X:57,150,578...57,175,352
JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 ISO (MGI:MGI:3578712|PMID:15902259) MGI PMID:15902259 MGI:MGI:3578712 NCBI chr 7:55,341,941...55,345,824
Ensembl chr 7:55,343,134...55,345,904
JBrowse link
G MIB1 mindbomb E3 ubiquitin protein ligase 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:106,917,995...107,043,144
Ensembl chr 6:106,914,006...107,040,106
JBrowse link
G MSGN1 mesogenin 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:120,033,980...120,034,624
Ensembl chr 3:120,034,043...120,034,624
JBrowse link
G MYF5 myogenic factor 5 IEA Ensembl GO_REF:0000107 NCBI chr 5:100,753,440...100,755,558
Ensembl chr 5:100,752,890...100,755,494
JBrowse link
G MYF6 myogenic factor 6 IEA Ensembl GO_REF:0000107 NCBI chr 5:100,762,918...100,764,771
Ensembl chr 5:100,762,910...100,765,704
JBrowse link
G NCKAP1 NCK associated protein 1 ISO (MGI:MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:MGI:3701029 NCBI chr15:88,425,861...88,528,417
Ensembl chr15:88,425,141...88,528,231
JBrowse link
G NKX3-1 NK3 homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr14:7,783,296...7,787,036
Ensembl chr14:7,782,421...7,787,034
JBrowse link
G NLE1 notchless homolog 1 IEA Ensembl GO_REF:0000107 NCBI chr12:40,035,518...40,044,395
Ensembl chr12:40,035,547...40,044,399
JBrowse link
G PALB2 partner and localizer of BRCA2 IEA Ensembl GO_REF:0000107 NCBI chr 3:22,586,881...22,612,837
Ensembl chr 3:22,586,856...22,612,835
JBrowse link
G PAX1 paired box 1 IEA Ensembl GO_REF:0000107 NCBI chr17:29,421,117...29,436,481
Ensembl chr17:29,422,129...29,431,990
JBrowse link
G PLXNA2 plexin A2 IEA Ensembl GO_REF:0000107 NCBI chr 9:134,584,760...134,800,471
Ensembl chr 9:134,584,406...134,796,064
JBrowse link
G POFUT1 protein O-fucosyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr17:35,856,557...35,883,918
Ensembl chr17:35,856,574...35,883,001
JBrowse link
G POGLUT1 protein O-glucosyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr13:140,763,231...140,793,645
Ensembl chr13:140,764,185...140,793,596
JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr 4:79,687,375...79,850,146
Ensembl chr 4:79,687,359...79,847,281
JBrowse link
G PSEN1 presenilin 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:96,478,179...96,567,884
Ensembl chr 7:96,478,181...96,569,132
JBrowse link
G PSEN2 presenilin 2 ISO (MGI:MGI:1347695|PMID:10557208), (MGI:MGI:4367298|PMID:19779553) MGI PMID:10557208, PMID:19779553 MGI:MGI:1347695, MGI:MGI:4367298 NCBI chr10:14,532,556...14,561,862
Ensembl chr10:14,532,550...14,561,858
JBrowse link
G RBPJ recombination signal binding protein for immunoglobulin kappa J region IEA Ensembl GO_REF:0000107 NCBI chr 8:19,933,035...20,166,746
Ensembl chr 8:19,922,779...20,166,755
JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 ISO (MGI:MGI:3613215|PMID:16326386)
(MGI:MGI:3715395|PMID:17531978)
UniProtKB
MGI
PMID:16326386, PMID:17531978 MGI:MGI:3613215, MGI:MGI:3715395 NCBI chr 1:82,427,956...82,432,844
Ensembl chr 1:82,423,391...82,432,638
JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 IEA Ensembl GO_REF:0000107 NCBI chr14:2,803,840...3,035,384
Ensembl chr14:2,804,061...3,035,241
JBrowse link
G SEMA3C semaphorin 3C IEA Ensembl GO_REF:0000107 NCBI chr 9:99,114,649...99,432,683
Ensembl chr 9:99,251,714...99,433,230
JBrowse link
G SFRP1 secreted frizzled related protein 1 ISO (PMID:10654605)
(MGI:MGI:3618960|PMID:16467359)
BHF-UCL
MGI
PMID:10654605, PMID:16467359 MGI:MGI:3618960 NCBI chr17:10,436,414...10,489,773
Ensembl chr17:10,436,426...10,489,748
JBrowse link
G SFRP2 secreted frizzled related protein 2 ISO (MGI:MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:MGI:3618960 NCBI chr 8:75,337,311...75,345,926
Ensembl chr 8:75,337,133...75,345,926
JBrowse link
G SMAD3 SMAD family member 3 IEA Ensembl GO_REF:0000107 NCBI chr 1:164,998,457...165,124,455
Ensembl chr 1:164,998,083...165,124,454
JBrowse link
G TBX18 T-box transcription factor 18 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:53,836,939...53,867,460
Ensembl chr 1:53,837,454...53,867,475
JBrowse link
G TBX19 T-box transcription factor 19 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:82,663,121...82,699,261
Ensembl chr 4:82,663,581...82,697,813
JBrowse link
G TBXT T-box transcription factor T IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:2,717,165...2,725,561
Ensembl chr 1:2,717,165...2,724,976
JBrowse link
G TCAP titin-cap ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chr12:22,651,666...22,652,904
Ensembl chr12:22,651,666...22,653,453
JBrowse link
G TCF15 transcription factor 15 IEA Ensembl GO_REF:0000107 NCBI chr17:34,626,682...34,632,881
Ensembl chr17:34,626,706...34,632,388
JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 ISO (MGI:MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:MGI:4453264 NCBI chr14:29,390,903...29,400,454
Ensembl chr14:29,390,335...29,400,437
JBrowse link
G TP53 tumor protein p53 IEA Ensembl GO_REF:0000107 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,643...52,953,819
JBrowse link
G TTN titin ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chr15:84,226,953...84,501,320 JBrowse link
G WNT3A Wnt family member 3A ISO (MGI:MGI:3037351|PMID:12636920)
(MGI:MGI:3611726|PMID:16291790), (MGI:MGI:64780|PMID:8299937)
MGI PMID:8299937, PMID:12636920, PMID:16291790 MGI:MGI:3037351, MGI:MGI:3611726, MGI:MGI:64780 NCBI chr 2:51,153,978...51,203,678
Ensembl chr 2:51,154,086...51,202,176
JBrowse link
G WNT5A Wnt family member 5A IEA Ensembl GO_REF:0000107 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
JBrowse link
G XRCC2 X-ray repair cross complementing 2 IEA Ensembl GO_REF:0000107 NCBI chr18:4,808,428...4,834,281
Ensembl chr18:4,808,469...4,835,804
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 IEA Ensembl GO_REF:0000107 NCBI chr15:7,498,879...7,631,347
Ensembl chr15:7,499,026...7,632,655
JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:118,368,471...118,765,107
Ensembl chr 3:118,521,296...118,932,446
JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HES5 hes family bHLH transcription factor 5 IEA Ensembl GO_REF:0000107 NCBI chr 6:64,409,110...64,410,541
Ensembl chr 6:64,409,115...64,411,006
JBrowse link
G IRX1 iroquois homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr16:77,695,704...77,701,089
Ensembl chr16:77,695,710...77,701,037
JBrowse link
G IRX2 iroquois homeobox 2 IEA Ensembl GO_REF:0000107 NCBI chr16:78,305,869...78,322,776
Ensembl chr16:78,305,898...78,318,071
JBrowse link
G IRX3 iroquois homeobox 3 IEA Ensembl GO_REF:0000107 NCBI chr 6:31,044,919...31,049,067
Ensembl chr 6:31,046,098...31,048,822
JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:118,368,471...118,765,107
Ensembl chr 3:118,521,296...118,932,446
JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEUROG1 neurogenin 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:137,763,091...137,766,787
Ensembl chr 2:137,765,942...137,766,682
JBrowse link
G TIFAB TIFA inhibitor IEA Ensembl GO_REF:0000107 NCBI chr 2:137,675,245...137,678,880
Ensembl chr 2:137,672,407...137,678,612
JBrowse link
G WT1 WT1 transcription factor ISS UniProt GO_REF:0000024 NCBI chr 2:28,411,467...28,456,007
Ensembl chr 2:28,411,794...28,456,003
JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NRP1 neuropilin 1 IEA Ensembl GO_REF:0000107 NCBI chr10:56,280,673...56,430,832
Ensembl chr10:56,280,363...56,430,777
JBrowse link
G NRP2 neuropilin 2 IEA Ensembl GO_REF:0000107 NCBI chr15:108,974,246...109,092,316
Ensembl chr15:108,974,816...109,092,309
JBrowse link
G SEMA3A semaphorin 3A IEA Ensembl GO_REF:0000107 NCBI chr 9:95,934,937...96,387,950
Ensembl chr 9:96,065,922...96,387,950
JBrowse link
G SEMA3F semaphorin 3F IEA Ensembl GO_REF:0000107 NCBI chr13:32,641,376...32,671,231
Ensembl chr13:32,641,423...32,671,223
JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 IEA Ensembl GO_REF:0000107 NCBI chr14:97,487,854...97,490,118
Ensembl chr14:97,487,226...97,490,450
JBrowse link
G LRP6 LDL receptor related protein 6 ISO (MGI:MGI:3055483|PMID:15469977) MGI PMID:15469977 MGI:MGI:3055483 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,689
JBrowse link
G SFRP1 secreted frizzled related protein 1 IEA Ensembl GO_REF:0000107 NCBI chr17:10,436,414...10,489,773
Ensembl chr17:10,436,426...10,489,748
JBrowse link
G SFRP2 secreted frizzled related protein 2 IEA Ensembl GO_REF:0000107 NCBI chr 8:75,337,311...75,345,926
Ensembl chr 8:75,337,133...75,345,926
JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NCKAP1 NCK associated protein 1 ISO (MGI:MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:MGI:3701029 NCBI chr15:88,425,861...88,528,417
Ensembl chr15:88,425,141...88,528,231
JBrowse link
G PCSK6 proprotein convertase subtilisin/kexin type 6 IEA Ensembl GO_REF:0000107 NCBI chr 1:145,508,658...145,697,017
Ensembl chr 1:145,508,636...145,697,009
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16524
    multicellular organismal process 8045
      pattern specification process 472
        regionalization 377
          segmentation 107
            appendage segmentation + 0
            blastoderm segmentation + 19
            brain segmentation 3
            central nervous system segmentation + 3
            renal system segmentation + 1
            segment specification + 15
            somitogenesis + 77
            trunk segmentation + 4
Path 2
Term Annotations click to browse term
  biological_process 16524
    developmental process 6285
      anatomical structure development 5826
        multicellular organism development 5330
          pattern specification process 472
            regionalization 377
              segmentation 107
                appendage segmentation + 0
                blastoderm segmentation + 19
                brain segmentation 3
                central nervous system segmentation + 3
                renal system segmentation + 1
                segment specification + 15
                somitogenesis + 77
                trunk segmentation + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.