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ONTOLOGY REPORT - ANNOTATIONS


Term:segmentation
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Accession:GO:0035282 term browser browse the term
Definition:The regionalization process that divides an organism or part of an organism into a series of semi-repetitive parts, or segments, often arranged along a longitudinal axis.
Synonyms:xref: Wikipedia:Segmentation_(biology)


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segmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd ACD shelterin complex subunit and telomerase recruitment factor ISO (MGI:MGI:3526782|PMID:15537664) MGI PMID:15537664 MGI:MGI:3526782 NCBI chrNW_004936475:18,049,134...18,052,123 JBrowse link
G Dvl2 dishevelled segment polarity protein 2 ISO (MGI:MGI:82989|PMID:8887313) BHF-UCL PMID:8887313 MGI:MGI:82989 NCBI chrNW_004936595:520,299...528,361 JBrowse link
G Psen1 presenilin 1 ISO (MGI:MGI:1931803|PMID:11262239)
(MGI:MGI:3587130|PMID:16079160)
MGI PMID:11262239, PMID:16079160 MGI:MGI:1931803, MGI:MGI:3587130 NCBI chrNW_004936488:2,464,623...2,528,807 JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 ISO (MGI:MGI:3580203|PMID:15870281) MGI PMID:15870281 MGI:MGI:3580203 NCBI chrNW_004936545:7,286,018...7,407,623 JBrowse link
G Fzd5 frizzled class receptor 5 ISO (PMID:9054360) BHF-UCL PMID:9054360 NCBI chrNW_004936631:3,909,046...3,915,939 JBrowse link
G Tasor transcription activation suppressor ISO (MGI:MGI:6109647|PMID:28839193) UniProt PMID:28839193 MGI:MGI:6109647 NCBI chrNW_004936473:7,053,797...7,098,608 JBrowse link
G Tbx3 T-box transcription factor 3 ISO (PMID:9207801) UniProtKB PMID:9207801 NCBI chrNW_004936558:7,230,361...7,243,651 JBrowse link
G Tcf7l1 transcription factor 7 like 1 ISO (MGI:MGI:3043490|PMID:14668413) MGI PMID:14668413 MGI:MGI:3043490 NCBI chrNW_004936712:1,848,478...1,962,644 JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 ISO (MGI:MGI:1303194|PMID:9790191) MGI PMID:9790191 MGI:MGI:1303194 NCBI chrNW_004936596:451,483...453,892 JBrowse link
G Wnt5a Wnt family member 5A ISO (MGI:MGI:4835157|PMID:9054360) BHF-UCL PMID:9054360 MGI:MGI:4835157 NCBI chrNW_004936473:6,031,627...6,052,211 JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 ISO (MGI:MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:MGI:1891551 NCBI chrNW_004936587:5,065,200...5,143,029 JBrowse link
G Med12 mediator complex subunit 12 ISO (MGI:MGI:4839483|PMID:20630950) MGI PMID:20630950 MGI:MGI:4839483 NCBI chrNW_004936762:460,342...483,264 JBrowse link
G Wnt3a Wnt family member 3A ISO (MGI:MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:MGI:1891551 NCBI chrNW_004936864:150,742...179,205 JBrowse link
BMP signaling pathway involved in renal system segmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 ISO (MGI:MGI:3710018|PMID:17442697) UniProtKB PMID:17442697 MGI:MGI:3710018 NCBI chrNW_004936697:1,054,237...1,061,468 JBrowse link
brain segmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 ISO (MGI:MGI:64171|PMID:7903221) MGI PMID:7903221 MGI:MGI:64171 NCBI chrNW_004936753:1,958,250...1,962,640 JBrowse link
G Hoxa2 homeobox A2 ISO (MGI:MGI:1098901|PMID:9367425) MGI PMID:9367425 MGI:MGI:1098901 NCBI chrNW_004936478:3,729,079...3,731,353 JBrowse link
G Mafb MAF bZIP transcription factor B ISO (MGI:MGI:67780|PMID:7925021) MGI PMID:7925021 MGI:MGI:67780 NCBI chrNW_004936561:1,007,273...1,010,548 JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled related protein 1 ISO (MGI:MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:MGI:3793375 NCBI chrNW_004936785:1,276,478...1,320,397 JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISO (MGI:MGI:5545944|PMID:23072809) UniProtKB PMID:23072809 MGI:MGI:5545944 NCBI chrNW_004936823:283,207...290,970 JBrowse link
G Nrarp NOTCH regulated ankyrin repeat protein ISO (MGI:MGI:5317364|PMID:21795391) MGI PMID:21795391 MGI:MGI:5317364 NCBI chrNW_004936669:702,825...705,009 JBrowse link
P granule organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family member 6 ISO (MGI:MGI:4943609|PMID:21397848) UniProtKB PMID:21397848 MGI:MGI:4943609 NCBI chrNW_004936741:867,501...872,899 JBrowse link
G Tdrd5 tudor domain containing 5 ISO (MGI:MGI:4946318|PMID:21383078) UniProtKB PMID:21383078 MGI:MGI:4946318 NCBI chrNW_004936481:9,418,512...9,485,388 JBrowse link
regulation of cell motility involved in somitogenic axis elongation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004936529:8,885,803...9,034,217 JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdx1 caudal type homeobox 1 ISO (MGI:MGI:5301472|PMID:22015720) UniProtKB PMID:22015720 MGI:MGI:5301472 NCBI chrNW_004936504:4,736,621...4,752,354 JBrowse link
G Cdx2 caudal type homeobox 2 ISO (MGI:MGI:5301472|PMID:22015720) UniProtKB PMID:22015720 MGI:MGI:5301472 NCBI chrNW_004936472:23,137,936...23,141,205 JBrowse link
G Dll1 delta like canonical Notch ligand 1 ISO (MGI:MGI:5689216|PMID:26114479) UniProtKB PMID:26114479 MGI:MGI:5689216 NCBI chrNW_004937098:212,704...220,589 JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 ISO (MGI:MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:MGI:3820487 NCBI chrNW_004936503:3,857,165...3,864,130 JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISO (PMID:19061953)
(MGI:MGI:4367298|PMID:19779553)
UniProtKB
MGI
PMID:19061953, PMID:19779553 MGI:MGI:4367298 NCBI chrNW_004936823:283,207...290,970 JBrowse link
G Notch1 notch receptor 1 ISO (MGI:MGI:72973|PMID:7789282) MGI PMID:7789282 MGI:MGI:72973 NCBI chrNW_004936669:1,292,016...1,334,061 JBrowse link
G Pax3 paired box 3 ISO (MGI:MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:MGI:3820487 NCBI chrNW_004936569:4,215,513...4,307,815 JBrowse link
retinoic acid receptor signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 ISO (MGI:MGI:3578715|PMID:15889094) MGI PMID:15889094 MGI:MGI:3578715 NCBI chrNW_004936471:19,175,997...19,263,335 JBrowse link
segment specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl2 dishevelled segment polarity protein 2 ISO (MGI:MGI:2389015|PMID:12421720) MGI PMID:12421720 MGI:MGI:2389015 NCBI chrNW_004936595:520,299...528,361 JBrowse link
G Hoxa2 homeobox A2 ISO (MGI:MGI:1098901|PMID:9367425) MGI PMID:9367425 MGI:MGI:1098901 NCBI chrNW_004936478:3,729,079...3,731,353 JBrowse link
G Mafb MAF bZIP transcription factor B ISO (MGI:MGI:2660991|PMID:12701106) MGI PMID:12701106 MGI:MGI:2660991 NCBI chrNW_004936561:1,007,273...1,010,548 JBrowse link
G Mllt3 MLLT3 super elongation complex subunit ISO (MGI:MGI:2387913|PMID:12242306) MGI PMID:12242306 MGI:MGI:2387913 NCBI chrNW_004936652:2,040,685...2,309,059 JBrowse link
G Msgn1 mesogenin 1 ISO (MGI:MGI:1928575|PMID:11124811) MGI PMID:11124811 MGI:MGI:1928575 NCBI chrNW_004936493:13,129,883...13,130,464 JBrowse link
G Mtf2 metal response element binding transcription factor 2 ISO (MGI:MGI:4946172|PMID:21059868) UniProtKB PMID:21059868 MGI:MGI:4946172 NCBI chrNW_004936537:6,071,435...6,134,144 JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO (MGI:MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:MGI:3821807 NCBI chrNW_004936469:50,329,564...50,443,532 JBrowse link
G Foxa2 forkhead box A2 ISO (MGI:MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:MGI:2157654 NCBI chrNW_004936620:2,966,341...2,969,349 JBrowse link
G Gdf3 growth differentiation factor 3 ISO (MGI:MGI:3611720|PMID:16368929) MGI PMID:16368929 MGI:MGI:3611720 NCBI chrNW_004937847:8,179...16,783 JBrowse link
G Kdm6a lysine demethylase 6A ISO (MGI:MGI:5448135|PMID:22949634) MGI PMID:22949634 MGI:MGI:5448135 NCBI chrNW_004936502:10,980,303...11,196,711 JBrowse link
G Lhx1 LIM homeobox 1 ISO (MGI:MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:MGI:2157654 NCBI chrNW_004936490:1,324,378...1,332,177 JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 ISO (MGI:MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:MGI:4459001 NCBI chrNW_004936483:15,555,084...15,557,060 JBrowse link
G Nrarp NOTCH regulated ankyrin repeat protein ISO (MGI:MGI:5438472|PMID:21998026) MGI PMID:21998026 MGI:MGI:5438472 NCBI chrNW_004936669:702,825...705,009 JBrowse link
G Otx2 orthodenticle homeobox 2 ISO (MGI:MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:MGI:2157654 NCBI chrNW_004936495:1,433,124...1,449,409 JBrowse link
G Ripply1 ripply transcriptional repressor 1 ISO (MGI:MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:MGI:4459001 NCBI chrNW_004936499:7,845,180...7,848,954 JBrowse link
G Ripply2 ripply transcriptional repressor 2 ISO (MGI:MGI:3613215|PMID:16326386)
(MGI:MGI:4459001|PMID:20346937)
UniProtKB
MGI
PMID:16326386, PMID:20346937 MGI:MGI:3613215, MGI:MGI:4459001 NCBI chrNW_004936510:7,101,148...7,106,184 JBrowse link
G Smad4 SMAD family member 4 ISO (MGI:MGI:1195384|PMID:9420335) MGI PMID:9420335 MGI:MGI:1195384 NCBI chrNW_004936497:12,242,869...12,278,012 JBrowse link
G Tbx6 T-box transcription factor 6 ISO (MGI:MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:MGI:4459001 NCBI chrNW_004936501:12,402,709...12,407,571 JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 ISO (MGI:MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:MGI:4453264 NCBI chrNW_004936558:1,223,114...1,258,699 JBrowse link
somite specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cobl cordon-bleu WH2 repeat protein ISO (PMID:7586755) BHF-UCL PMID:7586755 NCBI chrNW_004936686:621,502...872,824 JBrowse link
G Dll1 delta like canonical Notch ligand 1 ISO (MGI:MGI:3034157|PMID:14960495) MGI PMID:14960495 MGI:MGI:3034157 NCBI chrNW_004937098:212,704...220,589 JBrowse link
G Meox1 mesenchyme homeobox 1 ISO (MGI:MGI:2669571|PMID:12925591) MGI PMID:12925591 MGI:MGI:2669571 NCBI chrNW_004936541:216,390...238,153 JBrowse link
G Meox2 mesenchyme homeobox 2 ISO (MGI:MGI:2669571|PMID:12925591) MGI PMID:12925591 MGI:MGI:2669571 NCBI chrNW_004936546:2,239,442...2,304,099 JBrowse link
somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi1 abl interactor 1 ISO (MGI:MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:MGI:3577662 NCBI chrNW_004936484:2,090,605...2,194,109 JBrowse link
G Atm ATM serine/threonine kinase ISO (MGI:MGI:3624894|PMID:16687486) MGI PMID:16687486 MGI:MGI:3624894 NCBI chrNW_004936551:359,134...534,672 JBrowse link
G Axin2 axin 2 ISO (MGI:MGI:3037351|PMID:12636920) MGI PMID:12636920 MGI:MGI:3037351 NCBI chrNW_004936541:7,155,963...7,242,466 JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO (MGI:MGI:3702797|PMID:16943278) MGI PMID:16943278 MGI:MGI:3702797 NCBI chrNW_004936804:52,435...115,289 JBrowse link
G Crb2 crumbs cell polarity complex component 2 ISO (MGI:MGI:5296388|PMID:22072575) UniProtKB PMID:22072575 MGI:MGI:5296388 NCBI chrNW_004936487:11,793,078...11,813,803 JBrowse link
G Dll1 delta like canonical Notch ligand 1 ISO (MGI:MGI:5545944|PMID:23072809)
(MGI:MGI:3578712|PMID:15902259)
UniProtKB
MGI
PMID:15902259, PMID:23072809 MGI:MGI:3578712, MGI:MGI:5545944 NCBI chrNW_004937098:212,704...220,589 JBrowse link
G Dll3 delta like canonical Notch ligand 3 ISO (MGI:MGI:1095777|PMID:9272948)
(MGI:MGI:3620337|PMID:15170697)
MGI PMID:9272948, PMID:15170697 MGI:MGI:1095777, MGI:MGI:3620337 NCBI chrNW_004936661:2,322,531...2,330,150 JBrowse link
G Ep300 E1A binding protein p300 ISO (MGI:MGI:3583034|PMID:15937931) MGI PMID:15937931 MGI:MGI:3583034 NCBI chrNW_004936492:696,982...778,132 JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO (MGI:MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:MGI:3821807 NCBI chrNW_004936469:50,329,564...50,443,532 JBrowse link
G Foxb1 forkhead box B1 ISO (MGI:MGI:3771770|PMID:18064677) UniProtKB PMID:18064677 MGI:MGI:3771770 NCBI chrNW_004936471:20,934,524...20,935,584 JBrowse link
G Foxc2 forkhead box C2 ISO (MGI:MGI:2150572|PMID:11562355) UniProtKB PMID:11562355 MGI:MGI:2150572 NCBI chrNW_004936641:2,236,224...2,238,501 JBrowse link
G Foxf1 forkhead box F1 ISO (MGI:MGI:1928688|PMID:11124112) MGI PMID:11124112 MGI:MGI:1928688 NCBI chrNW_004943883:4...1,756 JBrowse link
G Hes7 hes family bHLH transcription factor 7 ISO (MGI:MGI:3046002|PMID:15170214)
(MGI:MGI:2152470|PMID:11641270), (MGI:MGI:4367298|PMID:19779553)
MGI PMID:11641270, PMID:15170214, PMID:19779553 MGI:MGI:2152470, MGI:MGI:3046002, MGI:MGI:4367298 NCBI chrNW_004936595:1,352,621...1,355,177 JBrowse link
G Kat2a lysine acetyltransferase 2A ISO (MGI:MGI:3709911|PMID:17325035)
(MGI:MGI:3583034|PMID:15937931)
MGI PMID:15937931, PMID:17325035 MGI:MGI:3583034, MGI:MGI:3709911 NCBI chrNW_004936490:16,952,698...16,960,424 JBrowse link
G Lef1 lymphoid enhancer binding factor 1 ISO (MGI:MGI:1334099|PMID:10090727)
(MGI:MGI:3510574|PMID:15545629)
MGI PMID:10090727, PMID:15545629 MGI:MGI:1334099, MGI:MGI:3510574 NCBI chrNW_004936818:453,635...569,194 JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISO (MGI:MGI:5545944|PMID:23072809)
(MGI:MGI:3774705|PMID:18234727)
UniProtKB
MGI
PMID:18234727, PMID:23072809 MGI:MGI:3774705, MGI:MGI:5545944 NCBI chrNW_004936823:283,207...290,970 JBrowse link
G Lrp6 LDL receptor related protein 6 ISO (MGI:MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:MGI:4413372 NCBI chrNW_004936587:5,065,200...5,143,029 JBrowse link
G Med12 mediator complex subunit 12 ISO (MGI:MGI:4839544|PMID:20589884) MGI PMID:20589884 MGI:MGI:4839544 NCBI chrNW_004936762:460,342...483,264 JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 ISO (MGI:MGI:3578712|PMID:15902259) MGI PMID:15902259 MGI:MGI:3578712 NCBI chrNW_004936483:15,555,084...15,557,060 JBrowse link
G Mib1 mindbomb E3 ubiquitin protein ligase 1 ISO (MGI:MGI:3603078|PMID:16000382) MGI PMID:16000382 MGI:MGI:3603078 NCBI chrNW_004936550:1,439,652...1,577,804 JBrowse link
G Msgn1 mesogenin 1 ISO (MGI:MGI:1928575|PMID:11124811), (MGI:MGI:5545970|PMID:21750544) MGI PMID:11124811, PMID:21750544 MGI:MGI:1928575, MGI:MGI:5545970 NCBI chrNW_004936493:13,129,883...13,130,464 JBrowse link
G Myf5 myogenic factor 5 ISO (MGI:MGI:3849775|PMID:19531352)
(MGI:MGI:78390|PMID:8565825)
(MGI:MGI:1861090|PMID:10929709)
MGI PMID:8565825, PMID:10929709, PMID:19531352 MGI:MGI:1861090, MGI:MGI:3849775, MGI:MGI:78390 NCBI chrNW_004936698:1,609,227...1,611,283 JBrowse link
G Myf6 myogenic factor 6 ISO (MGI:MGI:76810|PMID:7588068) MGI PMID:7588068 MGI:MGI:76810 NCBI chrNW_004936698:1,599,149...1,600,989 JBrowse link
G Nckap1 NCK associated protein 1 ISO (MGI:MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:MGI:3701029 NCBI chrNW_004936509:11,525,764...11,624,833 JBrowse link
G Nkx3-1 NK3 homeobox 1 ISO (PMID:9621431) BHF-UCL PMID:9621431 NCBI chrNW_004936555:7,087,677...7,091,334 JBrowse link
G Nle1 notchless homolog 1 ISO (MGI:MGI:5608942|PMID:24875805) MGI PMID:24875805 MGI:MGI:5608942 NCBI chrNW_004936538:101,245...109,796 JBrowse link
G Palb2 partner and localizer of BRCA2 ISO (MGI:MGI:4459579|PMID:20484223) MGI PMID:20484223 MGI:MGI:4459579 NCBI chrNW_004936501:8,246,927...8,273,258 JBrowse link
G Pax1 paired box 1 ISO (MGI:MGI:3590033|PMID:16093716) MGI PMID:16093716 MGI:MGI:3590033 NCBI chrNW_004936620:3,765,481...3,773,779 JBrowse link
G Pcdh8 protocadherin 8 ISO (MGI:MGI:2451199|PMID:12591245) MGI PMID:12591245 MGI:MGI:2451199 NCBI chrNW_004936667:716,802...721,441 JBrowse link
G Plxna2 plexin A2 ISO (PMID:19666519) BHF-UCL PMID:19666519 NCBI chrNW_004936557:4,808,371...4,920,453 JBrowse link
G Pofut1 protein O-fucosyltransferase 1 ISO (MGI:MGI:2660984|PMID:12697902) MGI PMID:12697902 MGI:MGI:2660984 NCBI chrNW_004936485:19,111,704...19,137,689 JBrowse link
G Poglut1 protein O-glucosyltransferase 1 ISO (MGI:MGI:1267118|PMID:9636176) MGI PMID:9636176 MGI:MGI:1267118 NCBI chrNW_004936536:6,408,066...6,427,864 JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit ISO (MGI:MGI:3624894|PMID:16687486) MGI PMID:16687486 MGI:MGI:3624894 NCBI chrNW_004936590:4,722,914...4,887,615 JBrowse link
G Psen1 presenilin 1 ISO (MGI:MGI:1347695|PMID:10557208), (MGI:MGI:4367298|PMID:19779553)
(MGI:MGI:87649|PMID:9153393)
MGI PMID:9153393, PMID:10557208, PMID:19779553 MGI:MGI:1347695, MGI:MGI:4367298, MGI:MGI:87649 NCBI chrNW_004936488:2,464,623...2,528,807 JBrowse link
G Psen2 presenilin 2 ISO (MGI:MGI:1347695|PMID:10557208), (MGI:MGI:4367298|PMID:19779553) MGI PMID:10557208, PMID:19779553 MGI:MGI:1347695, MGI:MGI:4367298 NCBI chrNW_004936526:3,584,194...3,611,719 JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region ISO (MGI:MGI:4367298|PMID:19779553) MGI PMID:19779553 MGI:MGI:4367298 NCBI chrNW_004936477:3,354,336...3,445,248 JBrowse link
G Ripply2 ripply transcriptional repressor 2 ISO (MGI:MGI:3613215|PMID:16326386)
(MGI:MGI:3715395|PMID:17531978)
UniProtKB
MGI
PMID:16326386, PMID:17531978 MGI:MGI:3613215, MGI:MGI:3715395 NCBI chrNW_004936510:7,101,148...7,106,184 JBrowse link
G Ror2 receptor tyrosine kinase like orphan receptor 2 ISO (MGI:MGI:3037488|PMID:14745966) MGI PMID:14745966 MGI:MGI:3037488 NCBI chrNW_004936796:630,307...675,157 JBrowse link
G Sema3c semaphorin 3C ISO (PMID:19666519) BHF-UCL PMID:19666519 NCBI chrNW_004936810:903,306...1,063,024 JBrowse link
G Sfrp1 secreted frizzled related protein 1 ISO (PMID:10654605)
(MGI:MGI:3618960|PMID:16467359)
BHF-UCL
MGI
PMID:10654605, PMID:16467359 MGI:MGI:3618960 NCBI chrNW_004936785:1,276,478...1,320,397 JBrowse link
G Sfrp2 secreted frizzled related protein 2 ISO (MGI:MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:MGI:3618960 NCBI chrNW_004936576:604,174...612,440 JBrowse link
G Smad3 SMAD family member 3 ISO (MGI:MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:MGI:3618021 NCBI chrNW_004936471:27,080,662...27,185,861 JBrowse link
G Tbx18 T-box transcription factor 18 ISO (MGI:MGI:3044041|PMID:15155583) MGI PMID:15155583 MGI:MGI:3044041 NCBI chrNW_004936510:6,366,450...6,396,056 JBrowse link
G Tbxt T-box transcription factor T ISO (MGI:MGI:3701028|PMID:16835439)
(MGI:MGI:64493|PMID:8293872)
(MGI:MGI:3056222|PMID:15384171)
MGI PMID:8293872, PMID:15384171, PMID:16835439 MGI:MGI:3056222, MGI:MGI:3701028, MGI:MGI:64493 NCBI chrNW_004936489:16,027,359...16,035,041 JBrowse link
G Tcap titin-cap ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chrNW_004936490:14,856,433...14,857,692 JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 ISO (MGI:MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:MGI:4453264 NCBI chrNW_004936558:1,223,114...1,258,699 JBrowse link
G Tp53 tumor protein p53 ISO (MGI:MGI:3709913|PMID:17320900) MGI PMID:17320900 MGI:MGI:3709913 NCBI chrNW_004936595:919,807...935,367 JBrowse link
G Ttn titin ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chrNW_004936509:7,733,426...7,999,503 JBrowse link
G Wnt3a Wnt family member 3A ISO (MGI:MGI:3611726|PMID:16291790), (MGI:MGI:64780|PMID:8299937)
(MGI:MGI:3037351|PMID:12636920)
MGI PMID:8299937, PMID:12636920, PMID:16291790 MGI:MGI:3037351, MGI:MGI:3611726, MGI:MGI:64780 NCBI chrNW_004936864:150,742...179,205 JBrowse link
G Wnt5a Wnt family member 5A ISO (MGI:MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:MGI:4413372 NCBI chrNW_004936473:6,031,627...6,052,211 JBrowse link
G Xrcc2 X-ray repair cross complementing 2 ISO (MGI:MGI:3708426|PMID:17116431) MGI PMID:17116431 MGI:MGI:3708426 NCBI chrNW_004936527:7,760,609...7,785,360 JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 ISO (MGI:MGI:3590396|PMID:16157277), (MGI:MGI:3624924|PMID:16598713) MGI PMID:16157277, PMID:16598713 MGI:MGI:3590396, MGI:MGI:3624924 NCBI chrNW_004936469:32,240,730...32,372,413 JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 ISO (MGI:MGI:3697513|PMID:16790474) UniProtKB PMID:16790474 MGI:MGI:3697513 NCBI chrNW_004936493:11,888,024...11,895,058 JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 ISO (PMID:15821257) UniProtKB PMID:15821257 NCBI chrNW_004936737:1,045,496...1,047,865 JBrowse link
G Irx1 iroquois homeobox 1 ISO (PMID:17875669) UniProtKB PMID:17875669 NCBI chrNW_004936634:3,130,197...3,135,273 JBrowse link
G Irx2 iroquois homeobox 2 ISO (PMID:17875669) UniProtKB PMID:17875669 NCBI chrNW_004936634:3,830,617...3,834,494 JBrowse link
G Irx3 iroquois homeobox 3 ISO (PMID:17875669) UniProtKB PMID:17875669 NCBI chrNW_004936475:6,810,678...6,813,186 JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 ISO (MGI:MGI:3697513|PMID:16790474) UniProtKB PMID:16790474 MGI:MGI:3697513 NCBI chrNW_004936493:11,888,024...11,895,058 JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurog1 neurogenin 1 ISO (PMID:23419067) CAFA PMID:23419067 NCBI chrNW_004936597:2,708,001...2,709,702 JBrowse link
G Tifab TIFA inhibitor ISO (PMID:23419067) CAFA PMID:23419067 NCBI chrNW_004936597:2,620,661...2,621,302 JBrowse link
G Wt1 WT1 transcription factor ISO (MGI:MGI:62488|PMID:8395349) UniProtKB PMID:8395349 MGI:MGI:62488 NCBI chrNW_004936533:5,411,949...5,459,693 JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 ISO (MGI:MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:MGI:3848580 NCBI chrNW_004936574:1,694,433...1,834,720 JBrowse link
G Nrp2 neuropilin 2 ISO (MGI:MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:MGI:3848580 NCBI chrNW_004936631:2,106,378...2,222,082 JBrowse link
G Sema3f semaphorin 3F ISO (MGI:MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:MGI:3848580 NCBI chrNW_004936529:1,704,523...1,733,465 JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO (MGI:MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:MGI:3793375 NCBI chrNW_004936787:307,290...309,963 JBrowse link
G Lrp6 LDL receptor related protein 6 ISO (MGI:MGI:3055483|PMID:15469977) MGI PMID:15469977 MGI:MGI:3055483 NCBI chrNW_004936587:5,065,200...5,143,029 JBrowse link
G Sfrp1 secreted frizzled related protein 1 ISO (MGI:MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:MGI:3793375 NCBI chrNW_004936785:1,276,478...1,320,397 JBrowse link
G Sfrp2 secreted frizzled related protein 2 ISO (MGI:MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:MGI:3793375 NCBI chrNW_004936576:604,174...612,440 JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK associated protein 1 ISO (MGI:MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:MGI:3701029 NCBI chrNW_004936509:11,525,764...11,624,833 JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 ISO (MGI:MGI:1858546|PMID:10809672) MGI PMID:10809672 MGI:MGI:1858546 NCBI chrNW_004936483:2,374,357...2,561,322 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11968
    multicellular organismal process 6224
      pattern specification process 443
        regionalization 357
          segmentation 100
            appendage segmentation + 0
            blastoderm segmentation + 17
            brain segmentation 3
            central nervous system segmentation + 3
            renal system segmentation + 1
            segment specification + 15
            somitogenesis + 72
            trunk segmentation + 3
Path 2
Term Annotations click to browse term
  biological_process 11968
    developmental process 5628
      anatomical structure development 5266
        multicellular organism development 4832
          pattern specification process 443
            regionalization 357
              segmentation 100
                appendage segmentation + 0
                blastoderm segmentation + 17
                brain segmentation 3
                central nervous system segmentation + 3
                renal system segmentation + 1
                segment specification + 15
                somitogenesis + 72
                trunk segmentation + 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.