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ONTOLOGY REPORT - ANNOTATIONS


Term:response to interferon-beta
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Accession:GO:0035456 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-beta stimulus. Interferon-beta is a type I interferon.
Synonyms:exact_synonym: response to fiblaferon;   response to fibroblast interferon
 related_synonym: response to beta-1 interferon


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response to interferon-beta term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07015596.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr14:65,152,594...65,153,013 JBrowse link
G AABR07021463.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr13:73,661,131...73,661,553 JBrowse link
G Bst2 bone marrow stromal cell antigen 2 ISO
ISS
(MGI:MGI:5448513|PMID:21919738)
GO_REF:0000024
RGD
UniProt
PMID:21919738 GO_REF:0000024, MGI:MGI:5448513 NCBI chr16:19,938,781...19,942,353
Ensembl chr16:19,938,784...19,942,353
JBrowse link
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 IEP RGD PMID:17239402 RGD:9685485 NCBI chr 1:259,692,020...259,818,922
Ensembl chr 1:259,739,955...259,819,494
JBrowse link
G Ifitm1 interferon induced transmembrane protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:213,765,825...213,767,841
Ensembl chr 1:213,766,758...213,767,815
JBrowse link
G Ifitm2 interferon induced transmembrane protein 2 ISO
IBA
(PMID:21253575)
PMID:21873635
RGD PMID:21253575, PMID:21873635 RGD:13792537 NCBI chr 1:213,750,219...213,751,399
Ensembl chr 1:213,750,192...213,751,405
JBrowse link
G Ifitm3 interferon induced transmembrane protein 3 ISO
IBA
(PMID:21253575)
PMID:21873635
RGD PMID:21253575, PMID:21873635 RGD:13792537 NCBI chr 1:213,810,712...213,811,821
Ensembl chr 1:213,810,696...213,811,901
JBrowse link
G Ifitm6 interferon induced transmembrane protein 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:213,816,966...213,856,570
Ensembl chr 1:213,817,312...213,818,222
JBrowse link
G Ifnar2 interferon alpha and beta receptor subunit 2 ISO (PMID:26424569) RGD PMID:26424569 NCBI chr11:31,527,790...31,559,834
Ensembl chr11:31,539,016...31,558,851
JBrowse link
G Ikbke inhibitor of nuclear factor kappa B kinase subunit epsilon ISO (PMID:24882218) RGD PMID:24882218 NCBI chr13:48,031,325...48,056,394
Ensembl chr13:48,031,410...48,056,394
JBrowse link
G Plscr1 phospholipid scramblase 1 ISO (PMID:15308695) RGD PMID:15308695 NCBI chr 8:99,625,523...99,645,882
Ensembl chr 8:99,625,545...99,725,217
JBrowse link
G RGD1561738 similar to interferon induced transmembrane protein 2 (1-8D) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:73,661,005...73,661,699 JBrowse link
G RGD1565332 similar to interferon induced transmembrane protein 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:65,152,594...65,153,013 JBrowse link
G Shfl shiftless antiviral inhibitor of ribosomal frameshifting ISS
ISO
IEA
GO_REF:0000024
(PMID:27974568)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:27974568 GO_REF:0000024, GO_REF:0000107 NCBI chr 8:21,890,214...21,896,045
Ensembl chr 8:21,890,319...21,896,031
JBrowse link
G Stat1 signal transducer and activator of transcription 1 ISO (PMID:24882218) RGD PMID:24882218 NCBI chr 9:54,287,540...54,327,958
Ensembl chr 9:54,287,541...54,484,533
JBrowse link
G Xaf1 XIAP associated factor 1 ISO (PMID:18035482) RGD PMID:18035482 NCBI chr10:58,860,647...58,872,782
Ensembl chr10:58,860,940...58,873,674
JBrowse link
cellular response to interferon-beta term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acod1 aconitate decarboxylase 1 ISO (MGI:MGI:5489057|PMID:19014335) RGD PMID:19014335 MGI:MGI:5489057 NCBI chr15:93,612,968...93,622,322
Ensembl chr15:93,612,971...93,622,358
JBrowse link
G Aim2 absent in melanoma 2 ISO
IBA
(MGI:MGI:3836373|PMID:19158679)
PMID:21873635
RGD PMID:19158679, PMID:21873635 MGI:MGI:3836373, RGD:13792537 NCBI chr13:91,919,834...91,963,080
Ensembl chr13:91,954,138...91,962,588
JBrowse link
G Capn2 calpain 2 IEP RGD PMID:23390485 RGD:13792657 NCBI chr13:100,878,649...100,928,811
Ensembl chr13:100,878,650...100,928,811
JBrowse link
G Cdc34 cell division cycle 34, ubiqiutin conjugating enzyme ISO (PMID:24882218) RGD PMID:24882218 NCBI chr 7:12,899,957...12,905,339
Ensembl chr 7:12,899,958...12,905,339
JBrowse link
G Ddx41 DEAD-box helicase 41 ISO (MGI:MGI:5291856|PMID:21892174) RGD PMID:21892174 MGI:MGI:5291856 NCBI chr17:9,631,925...9,637,317
Ensembl chr17:9,631,925...9,637,316
JBrowse link
G Gbp1 guanylate binding protein 1 ISO (MGI:MGI:3836373|PMID:19158679) RGD PMID:19158679 MGI:MGI:3836373 NCBI chr 2:248,343,334...248,423,402
Ensembl chr 2:248,398,917...248,409,570
JBrowse link
G Gbp2 guanylate binding protein 2 ISO
IEA
(MGI:MGI:3836373|PMID:19158679)
GO_REF:0000107
RGD
Ensembl
PMID:19158679 GO_REF:0000107, MGI:MGI:3836373 NCBI chr 2:248,276,795...248,293,784
Ensembl chr 2:248,276,709...248,293,784
JBrowse link
G Gbp4 guanylate binding protein 4 ISO (MGI:MGI:3836373|PMID:19158679) RGD PMID:19158679 MGI:MGI:3836373 NCBI chr 2:248,249,232...248,263,104
Ensembl chr 2:248,249,468...248,263,168
JBrowse link
G Hcn1 hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 IEP RGD PMID:23042740 RGD:9686391 NCBI chr 2:50,099,576...50,499,799
Ensembl chr 2:50,099,576...50,499,799
JBrowse link
G Htra2 HtrA serine peptidase 2 ISO (PMID:17297443) RGD PMID:17297443 NCBI chr 4:113,883,671...113,886,833
Ensembl chr 4:113,883,670...113,886,994
JBrowse link
G Ifi47 interferon gamma inducible protein 47 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:34,277,993...34,285,623
Ensembl chr10:34,277,993...34,285,623
JBrowse link
G Ifit1 interferon-induced protein with tetratricopeptide repeats 1 ISO (MGI:MGI:3836373|PMID:19158679) RGD PMID:19158679 MGI:MGI:3836373 NCBI chr 1:252,944,105...252,946,170
Ensembl chr 1:252,944,103...252,946,170
JBrowse link
G Ifit3 interferon-induced protein with tetratricopeptide repeats 3 ISO (MGI:MGI:3836373|PMID:19158679) RGD PMID:19158679 MGI:MGI:3836373 NCBI chr 1:252,906,234...252,911,377
Ensembl chr 1:252,906,234...252,911,382
JBrowse link
G Ifnb1 interferon beta 1 ISO (PMID:18035482) RGD PMID:18035482 NCBI chr 5:106,865,192...106,865,746
Ensembl chr 5:106,865,192...106,865,746
JBrowse link
G Igtp interferon gamma induced GTPase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:43,631,089...43,639,044
Ensembl chr10:43,613,931...43,653,390
JBrowse link
G Irf1 interferon regulatory factor 1 ISO
IEA
(PMID:18035482)
GO_REF:0000107
RGD
Ensembl
PMID:18035482 GO_REF:0000107 NCBI chr10:39,109,530...39,116,532
Ensembl chr10:39,109,522...39,116,531
JBrowse link
G Irgc immunity related GTPase cinema IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:81,291,739...81,295,517
Ensembl chr 1:81,291,765...81,295,442
JBrowse link
G Irgm immunity-related GTPase M IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:34,213,885...34,221,968
Ensembl chr10:34,213,936...34,221,928
JBrowse link
G LOC100910979 interferon-inducible GTPase 1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:55,456,216...55,464,624
Ensembl chr18:55,576,239...55,584,957
Ensembl chr18:55,576,239...55,584,957
JBrowse link
G LOC102555392 interferon-inducible GTPase 1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:55,530,849...55,532,304
Ensembl chr18:55,466,373...55,467,629
JBrowse link
G LOC102556096 pyrin domain-containing protein 3-like IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:91,977,441...91,981,426
Ensembl chr13:91,980,114...91,981,432
JBrowse link
G LOC103694226 interferon-inducible GTPase 1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:55,466,358...55,467,813
Ensembl chr18:55,466,373...55,467,629
JBrowse link
G MGC105567 similar to cDNA sequence BC023105 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:55,685,613...55,704,910
Ensembl chr18:55,685,613...55,704,904
JBrowse link
G MGC108823 similar to interferon-inducible GTPase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:55,576,239...55,584,959
Ensembl chr18:55,576,239...55,584,957
JBrowse link
G Mnda myeloid cell nuclear differentiation antigen ISO
IBA
(MGI:MGI:3836373|PMID:19158679)
PMID:21873635
RGD PMID:19158679, PMID:21873635 MGI:MGI:3836373, RGD:13792537 NCBI chr13:92,073,664...92,091,335
Ensembl chr13:92,073,668...92,089,980
JBrowse link
G Ndufa13 NADH:ubiquinone oxidoreductase subunit A13 ISO (PMID:17297443) RGD PMID:17297443 NCBI chr16:21,275,311...21,282,246
Ensembl chr16:21,275,311...21,282,246
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 ISO (PMID:16410805) RGD PMID:16410805 NCBI chr14:113,530,470...113,561,645
Ensembl chr14:113,530,470...113,561,645
JBrowse link
G RGD1305184 similar to CDNA sequence BC023105 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:55,634,615...55,669,634
Ensembl chr18:55,666,027...55,667,668
JBrowse link
G RGD1309362 similar to interferon-inducible GTPase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:55,483,059...55,508,714
Ensembl chr18:55,505,993...55,508,704
JBrowse link
G RGD1559575 similar to novel protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:34,232,571...34,256,396
Ensembl chr10:34,232,615...34,242,985
JBrowse link
G Stat1 signal transducer and activator of transcription 1 ISO (PMID:18035482) RGD PMID:18035482 NCBI chr 9:54,287,540...54,327,958
Ensembl chr 9:54,287,541...54,484,533
JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 ISO (MGI:MGI:5291856|PMID:21892174) RGD PMID:21892174 MGI:MGI:5291856 NCBI chr18:28,529,537...28,535,828
Ensembl chr18:28,529,576...28,535,828
JBrowse link
G Tlr3 toll-like receptor 3 IEP RGD PMID:15661832 RGD:5128798 NCBI chr16:50,016,466...50,031,011
Ensembl chr16:50,016,857...50,031,214
JBrowse link
G Trex1 three prime repair exonuclease 1 ISO (MGI:MGI:3836373|PMID:19158679) RGD PMID:19158679 MGI:MGI:3836373 NCBI chr 8:117,796,127...117,797,427
Ensembl chr 8:117,796,128...117,797,427
JBrowse link
G Trim6 tripartite motif containing 6 ISO (PMID:24882218) RGD PMID:24882218 NCBI chr 1:169,410,084...169,423,305
Ensembl chr 1:169,410,115...169,423,283
JBrowse link
G Ube2g2 ubiquitin-conjugating enzyme E2G 2 ISO (PMID:24882218) RGD PMID:24882218 NCBI chr20:11,700,089...11,721,823
Ensembl chr20:11,700,089...11,721,838
JBrowse link
G Ube2k ubiquitin-conjugating enzyme E2K ISO (PMID:24882218) RGD PMID:24882218 NCBI chr14:44,289,247...44,348,691
Ensembl chr14:44,289,247...44,348,691
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    response to stimulus 10583
      response to chemical 6342
        response to organic substance 3865
          response to cytokine 1132
            response to interferon-beta 52
              cellular response to interferon-beta 37
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.