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ONTOLOGY REPORT - ANNOTATIONS


Term:ciliary transition zone
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Accession:GO:0035869 term browser browse the term
Definition:A region of the cilium between the basal body and proximal segment that is characterized by Y-shaped assemblages that connect axonemal microtubules to the ciliary membrane. The ciliary transition zone appears to function as a gate that controls ciliary membrane composition and separates the cytosol from the ciliary plasm.
Comment:Depending on the species, this region may have a distinct geometrically shaped electron-dense structure within the axonemal lumen visible in electron microscopy images; most animals don't display this inner structure. The axoneme extends through the ciliary transition zone, but only consists of the outer doublets. The central pair, axonemal spokes, and dynein complexes are not found in this part of the ciliary shaft. Note that the connecting cilium of the photoreceptor cells is thought to be equivalent to the transition zone.
Synonyms:exact_synonym: cilial transition zone;   cilium transition zone
 related_synonym: connecting cilium


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ciliary transition zone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arl3 ADP ribosylation factor like GTPase 3 JBrowse link 1 266,287,015 266,333,099 RGD:1624291
G B9d1 B9 domain containing 1 JBrowse link 10 47,784,294 47,794,399 RGD:1624291
RGD:1600115
G B9d2 B9 domain containing 2 JBrowse link 1 82,473,254 82,479,704 RGD:1624291
G Bbs4 Bardet-Biedl syndrome 4 JBrowse link 8 64,115,005 64,154,432 RGD:1624291
G Bbs9 Bardet-Biedl syndrome 9 JBrowse link 8 23,491,929 24,074,524 RGD:1624291
G Cc2d2a coiled-coil and C2 domain containing 2A JBrowse link 14 71,895,128 71,979,452 RGD:1624291
G Ccdc66 coiled-coil domain containing 66 JBrowse link 16 3,107,119 3,139,188 RGD:1624291
G Ccsap centriole, cilia and spindle-associated protein JBrowse link 19 56,615,326 56,634,031 RGD:1624291
RGD:13792537
G Cdkl1 cyclin dependent kinase like 1 JBrowse link 6 92,076,247 92,123,108 RGD:1600115
G Cep131 centrosomal protein 131 JBrowse link 10 109,243,240 109,267,636 RGD:1624291
G Cep290 centrosomal protein 290 JBrowse link 7 40,217,269 40,306,327 RGD:1624291
G Cetn3 centrin 3 JBrowse link 2 12,101,473 12,115,009 RGD:1624291
G Cfap36 cilia and flagella associated protein 36 JBrowse link 14 113,618,954 113,644,874 RGD:1624291
G Cibar1 CBY1 interacting BAR domain containing 1 JBrowse link 5 25,732,457 25,750,953 RGD:1624291
G Cplane1 ciliogenesis and planar polarity effector 1 JBrowse link 2
2
57,274,175
57,444,373
57,350,003
57,472,465
RGD:1624291
RGD:13792537
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 JBrowse link 6 7,900,962 7,933,795 RGD:1624291
RGD:1600115
G Kifap3 kinesin-associated protein 3 JBrowse link 13 82,072,497 82,217,256 RGD:13792537
G LOC108348055 B9 domain-containing protein 1 JBrowse link 10 49,019,745 49,029,851 RGD:1600115
G Macir macrophage immunometabolism regulator JBrowse link 9 111,327,333 111,347,428 RGD:1624291
G Mks1 MKS transition zone complex subunit 1 JBrowse link 10 75,149,814 75,160,481 RGD:1624291
G Nek4 NIMA-related kinase 4 JBrowse link 16 7,035,002 7,080,272 RGD:13204813
G Nphp1 nephrocystin 1 JBrowse link 3 120,316,048 120,370,089 RGD:1624291
G Nphp4 nephrocystin 4 JBrowse link 5 169,647,581 169,744,662 RGD:1624291
RGD:13792537
G Pcm1 pericentriolar material 1 JBrowse link 16 54,040,721 54,137,675 RGD:1624291
G Rpgrip1 RPGR interacting protein 1 JBrowse link 15 28,521,287 28,575,046 RGD:13204813
G Rpgrip1l Rpgrip1-like JBrowse link 19 17,115,266 17,208,055 RGD:1624291
RGD:13204813
G Septin2 septin 2 JBrowse link 9 100,624,876 100,658,053 RGD:1624291
G Tctn1 tectonic family member 1 JBrowse link 12 39,790,948 39,828,215 RGD:1624291
G Tctn2 tectonic family member 2 JBrowse link 12 37,400,896 37,427,256 RGD:1624291
G Tmem107 transmembrane protein 107 JBrowse link 10 55,653,694 55,656,270 RGD:1624291
RGD:13792537
RGD:1600115
G Tmem17 transmembrane protein 17 JBrowse link 14 107,268,235 107,308,546 RGD:1624291
RGD:13792537
RGD:1600115
G Tmem216 transmembrane protein 216 JBrowse link 1 226,601,201 226,606,417 RGD:1624291
RGD:13792537
G Tmem231 transmembrane protein 231 JBrowse link 19 44,137,444 44,158,624 RGD:1624291
RGD:13792537
RGD:1600115
G Tmem237 transmembrane protein 237 JBrowse link 9 65,882,063 65,917,424 RGD:1624291
RGD:13792537
G Tmem67 transmembrane protein 67 JBrowse link 5 25,666,138 25,721,056 RGD:1624291
G Tmem80 transmembrane protein 80 JBrowse link 1 214,317,300 214,326,293 RGD:1624291
RGD:13792537
G Traf3ip1 TRAF3 interacting protein 1 JBrowse link 9 98,621,499 98,658,223 RGD:1600115
RGD:1624291
G Ttbk2 tau tubulin kinase 2 JBrowse link 3 112,677,932 112,789,615 RGD:1624291
RGD:13792537
G Unc119b unc-119 lipid binding chaperone B JBrowse link 12 47,239,663 47,252,286 RGD:1624291
MKS complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahi1 Abelson helper integration site 1 JBrowse link 1 16,478,127 16,601,769 RGD:1624291
RGD:1600115
G B9d1 B9 domain containing 1 JBrowse link 10 47,784,294 47,794,399 RGD:1600115
RGD:1624291
G B9d2 B9 domain containing 2 JBrowse link 1 82,473,254 82,479,704 RGD:1624291
RGD:1600115
G Cc2d2a coiled-coil and C2 domain containing 2A JBrowse link 14 71,895,128 71,979,452 RGD:1624291
G Cep290 centrosomal protein 290 JBrowse link 7 40,217,269 40,306,327 RGD:1624291
G Kctd10 potassium channel tetramerization domain containing 10 JBrowse link 12 47,992,079 48,010,531 RGD:1624291
G LOC108348055 B9 domain-containing protein 1 JBrowse link 10 49,019,745 49,029,851 RGD:1600115
G Mks1 MKS transition zone complex subunit 1 JBrowse link 10 75,149,814 75,160,481 RGD:1600115
RGD:1624291
G Tctn1 tectonic family member 1 JBrowse link 12 39,790,948 39,828,215 RGD:1624291
RGD:13792537
G Tctn2 tectonic family member 2 JBrowse link 12 37,400,896 37,427,256 RGD:1600115
RGD:13792537
RGD:1624291
G Tmem107 transmembrane protein 107 JBrowse link 10 55,653,694 55,656,270 RGD:1624291
RGD:13792537
RGD:1600115
G Tmem17 transmembrane protein 17 JBrowse link 14 107,268,235 107,308,546 RGD:1624291
RGD:1600115
G Tmem216 transmembrane protein 216 JBrowse link 1 226,601,201 226,606,417 RGD:1624291
RGD:1600115
G Tmem231 transmembrane protein 231 JBrowse link 19 44,137,444 44,158,624 RGD:1624291
RGD:1600115
G Tmem67 transmembrane protein 67 JBrowse link 5 25,666,138 25,721,056 RGD:1600115
RGD:1624291
photoreceptor connecting cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adgrv1 adhesion G protein-coupled receptor V1 JBrowse link 2 8,926,843 9,504,455 RGD:1624291
G Arl3 ADP ribosylation factor like GTPase 3 JBrowse link 1 266,287,015 266,333,099 RGD:1600115
RGD:1624291
G Bbs4 Bardet-Biedl syndrome 4 JBrowse link 8 64,115,005 64,154,432 RGD:1624291
G Cep290 centrosomal protein 290 JBrowse link 7 40,217,269 40,306,327 RGD:1624291
G Cetn1 centrin 1 JBrowse link 18 785,972 786,674 RGD:1624291
G Cetn2 centrin 2 JBrowse link X 152,927,852 152,933,095 RGD:1624291
G Cetn3 centrin 3 JBrowse link 2 12,101,473 12,115,009 RGD:1624291
G Cfap410 cilia and flagella associated protein 410 JBrowse link 20 11,417,428 11,424,301 RGD:1624291
G Fam161a FAM161 centrosomal protein A JBrowse link 14 107,785,029 107,803,765 RGD:8553427
RGD:13792537
RGD:1624291
G Gnat1 G protein subunit alpha transducin 1 JBrowse link 8 116,433,302 116,438,038 RGD:1624291
G Ift122 intraflagellar transport 122 JBrowse link 4 147,756,574 147,826,983 RGD:1624291
G Ift140 intraflagellar transport 140 JBrowse link 10 14,373,668 14,461,509 RGD:1624291
G Ift20 intraflagellar transport 20 JBrowse link 10 65,805,808 65,811,353 RGD:1624291
G Ift52 intraflagellar transport 52 JBrowse link 3 159,388,868 159,413,358 RGD:1624291
G Ift57 intraflagellar transport 57 JBrowse link 11 53,664,638 53,731,779 RGD:1624291
G Ift88 intraflagellar transport 88 JBrowse link 15 37,690,417 37,786,855 RGD:1624291
G Iqcb1 IQ motif containing B1 JBrowse link 11 66,824,059 66,878,585 RGD:1624291
G Kif17 kinesin family member 17 JBrowse link 5 156,628,409 156,665,752 RGD:1624291
G Kif3a kinesin family member 3a JBrowse link 10 38,918,705 38,953,958 RGD:1624291
G Kifap3 kinesin-associated protein 3 JBrowse link 13 82,072,497 82,217,256 RGD:1624291
G Lca5 lebercilin LCA5 JBrowse link 8 90,926,309 90,984,271 RGD:14397561
RGD:1624291
G Mak male germ cell-associated kinase JBrowse link 17 21,531,651 21,567,742 RGD:1624291
G Myo7a myosin VIIA JBrowse link 1 163,001,313 163,071,545 RGD:1624291
G Nphp1 nephrocystin 1 JBrowse link 3 120,316,048 120,370,089 RGD:1624291
G Nphp4 nephrocystin 4 JBrowse link 5 169,647,581 169,744,662 RGD:1624291
G Pcdhb22 protocadherin beta 22 JBrowse link 18 30,590,864 30,595,456 RGD:1624291
G Pdzd7 PDZ domain containing 7 JBrowse link 1 264,776,393 264,796,206 RGD:13792537
G RGD1306271 similar to KIAA1549 protein JBrowse link 4 65,834,933 65,962,722 RGD:1624291
G Rp1 RP1, axonemal microtubule associated JBrowse link 5 15,005,028 15,060,508 RGD:1624291
G Rp1l1 RP1 like 1 JBrowse link 15 47,344,380 47,384,461 RGD:1624291
G Rpgr retinitis pigmentosa GTPase regulator JBrowse link X 14,271,012 14,331,745 RGD:1624291
G Rpgrip1 RPGR interacting protein 1 JBrowse link 15 28,521,287 28,575,046 RGD:1624291
G Rpgrip1l Rpgrip1-like JBrowse link 19 17,115,266 17,208,055 RGD:11537356
G Septin2 septin 2 JBrowse link 9 100,624,876 100,658,053 RGD:1624291
G Spata7 spermatogenesis associated 7 JBrowse link 6 122,603,248 122,648,718 RGD:1624291
RGD:1600115
G Sptbn5 spectrin, beta, non-erythrocytic 5 JBrowse link 3 111,833,411 111,875,551 RGD:1624291
G Tbcc tubulin folding cofactor C JBrowse link 9 16,405,187 16,406,338 RGD:1624291
G Tmem237 transmembrane protein 237 JBrowse link 9 65,882,063 65,917,424 RGD:1624291
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase JBrowse link 5 56,554,956 56,566,503 RGD:1624291
RGD:13792537
G Tsga10ip testis specific 10 interacting protein JBrowse link 1 220,772,592 220,786,952 RGD:13792537
G Ttc8 tetratricopeptide repeat domain 8 JBrowse link 6 122,920,308 122,974,525 RGD:1624291
G Ush1c USH1 protein network component harmonin JBrowse link 1 102,207,096 102,256,779 RGD:13792537
G Ush1g USH1 protein network component sans JBrowse link 10 103,866,566 103,873,416 RGD:1624291
G Ush2a usherin JBrowse link 13 106,750,738 107,434,195 RGD:1600128
RGD:1624291
G Wdr19 WD repeat domain 19 JBrowse link 14 44,705,012 44,767,120 RGD:1624291
G Whrn whirlin JBrowse link 5 79,235,541 79,317,206 RGD:1600128
RGD:13792537
RGD:1624291
RGD:1600115
photoreceptor distal connecting cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahi1 Abelson helper integration site 1 JBrowse link 1 16,478,127 16,601,769 RGD:1624291
G Cep290 centrosomal protein 290 JBrowse link 7 40,217,269 40,306,327 RGD:1624291
G Nphp1 nephrocystin 1 JBrowse link 3 120,316,048 120,370,089 RGD:1624291
G Nphp4 nephrocystin 4 JBrowse link 5 169,647,581 169,744,662 RGD:1624291
G Rpgr retinitis pigmentosa GTPase regulator JBrowse link X 14,271,012 14,331,745 RGD:1624291
G Rpgrip1 RPGR interacting protein 1 JBrowse link 15 28,521,287 28,575,046 RGD:1624291
G Spata7 spermatogenesis associated 7 JBrowse link 6 122,603,248 122,648,718 RGD:1600115
RGD:13792537
RGD:1624291
photoreceptor proximal connecting cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cep290 centrosomal protein 290 JBrowse link 7 40,217,269 40,306,327 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19949
    cellular anatomical entity 19598
      ciliary transition zone 76
        MKS complex 15
        NPHP complex 0
        Y-shaped link 0
        central cylinder 0
        ciliary necklace 0
        photoreceptor connecting cilium + 47
Path 2
Term Annotations click to browse term
  cellular_component 19949
    cellular anatomical entity 19598
      cell projection 2481
        plasma membrane bounded cell projection 2420
          cilium 652
            ciliary transition zone 76
              MKS complex 15
              NPHP complex 0
              Y-shaped link 0
              central cylinder 0
              ciliary necklace 0
              photoreceptor connecting cilium + 47
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.