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ONTOLOGY REPORT - ANNOTATIONS


Term:ciliary basal body
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Accession:GO:0036064 term browser browse the term
Definition:A membrane-tethered, short cylindrical array of microtubules and associated proteins found at the base of a eukaryotic cilium (also called flagellum) that is similar in structure to a centriole and derives from it. The cilium basal body is the site of assembly and remodelling of the cilium and serves as a nucleation site for axoneme growth. As well as anchoring the cilium, it is thought to provide a selective gateway regulating the entry of ciliary proteins and vesicles by intraflagellar transport.
Comment:In most eukaryotic cells, 'ciliary basal body' (GO:0036064) and 'centriole' (GO:0005814) represent a common entity that cycles through its function in cell division, then ciliogenesis, then cell division again. However, these structures are modified extensively as they transition into each other, and may contain different proteins, specific to each component.
Synonyms:exact_synonym: cilial basal body;   cilium basal body;   microtubule basal body
 broad_synonym: basal body
 alt_id: GO:0005932
 xref: NIF_Subcellular:sao11978067


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ciliary basal body term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07063281.1 RGD:13792537
G Agbl2 ATP/GTP binding protein-like 2 JBrowse link 3 79,622,791 79,647,402 RGD:1624291
G Agbl4 ATP/GTP binding protein-like 4 JBrowse link 5
5
130,742,297
130,286,393
131,656,581
130,305,884
RGD:1624291
G Ahi1 Abelson helper integration site 1 JBrowse link 1 16,478,127 16,601,769 RGD:1624291
RGD:1600115
G Akap9 A-kinase anchoring protein 9 JBrowse link 4 27,195,346 27,331,582 RGD:1624291
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:1624291
G Alms1 ALMS1, centrosome and basal body associated protein JBrowse link 4 117,371,544 117,472,310 RGD:8696019
G Arhgap35 Rho GTPase activating protein 35 JBrowse link 1 78,456,409 78,573,374 RGD:1600115
RGD:1624291
G Arl3 ADP ribosylation factor like GTPase 3 JBrowse link 1 266,287,015 266,333,099 RGD:1600115
RGD:1624291
G Armc9 armadillo repeat containing 9 JBrowse link 9 93,172,718 93,299,119 RGD:1600115
RGD:13792537
RGD:1624291
G B9d1 B9 domain containing 1 JBrowse link 10 47,784,294 47,794,399 RGD:1624291
RGD:1600115
G B9d2 B9 domain containing 2 JBrowse link 1 82,473,254 82,479,704 RGD:1624291
RGD:1600115
G Bbof1 basal body orientation factor 1 JBrowse link 6 108,123,855 108,149,613 RGD:1600115
G Bbs1 Bardet-Biedl syndrome 1 JBrowse link 1 220,146,084 220,165,545 RGD:13792537
G Bbs2 Bardet-Biedl syndrome 2 JBrowse link 19 11,385,921 11,421,523 RGD:1624291
RGD:13792537
G Bbs4 Bardet-Biedl syndrome 4 JBrowse link 8 64,115,005 64,154,432 RGD:1624291
G Bbs5 Bardet-Biedl syndrome 5 JBrowse link 3 55,886,695 55,907,717 RGD:1624291
RGD:13792537
G Bbs7 Bardet-Biedl syndrome 7 JBrowse link 2 123,283,402 123,322,991 RGD:1624291
RGD:13792537
G C2cd3 C2 domain containing 3 centriole elongation regulator JBrowse link 1 165,382,279 165,480,088 RGD:1624291
G Cby1 chibby family member 1, beta catenin antagonist JBrowse link 7 120,891,930 120,898,318 RGD:1624291
G Ccdc113 coiled-coil domain containing 113 JBrowse link 19 9,912,124 9,932,183 RGD:1624291
G Ccdc151 coiled-coil domain containing 151 JBrowse link 8 23,000,912 23,014,707 RGD:1624291
G Ccdc170 coiled-coil domain containing 170 JBrowse link 1
1
42,216,594
41,033,284
42,256,837
41,133,299
RGD:1624291
G Ccdc178 coiled-coil domain containing 178 JBrowse link 18 12,796,155 13,199,923 RGD:1624291
G Ccdc65 coiled-coil domain containing 65 JBrowse link 7 140,383,395 140,397,186 RGD:1624291
G Ccdc66 coiled-coil domain containing 66 JBrowse link 16 3,107,119 3,139,188 RGD:1624291
G Ccdc88a coiled coil domain containing 88A JBrowse link 14 113,771,093 113,936,376 RGD:1624291
G Ccsap centriole, cilia and spindle-associated protein JBrowse link 19 56,615,326 56,634,031 RGD:1624291
RGD:13792537
G Cdc45 cell division cycle 45 JBrowse link 11 86,328,785 86,354,099 RGD:1624291
G Cdk10 cyclin-dependent kinase 10 JBrowse link 19 56,024,903 56,032,610 RGD:1600115
RGD:1624291
G Cdkl5 cyclin-dependent kinase-like 5 JBrowse link X 35,536,396 35,773,204 RGD:1624291
G Cenpf centromere protein F JBrowse link 13 108,132,499 108,178,609 RGD:1624291
G Cenpj centromere protein J JBrowse link 15 36,745,672 36,809,228 RGD:1624291
G Cep131 centrosomal protein 131 JBrowse link 10 109,243,240 109,267,636 RGD:1624291
G Cep19 centrosomal protein 19 JBrowse link 11 71,921,713 71,938,335 RGD:1600115
RGD:13792537
RGD:1624291
G Cep20 centrosomal protein 20 JBrowse link 10 730,215 751,061 RGD:1624291
RGD:13792537
G Cep250 centrosomal protein 250 JBrowse link 3 151,508,366 151,544,631 RGD:1624291
G Cep290 centrosomal protein 290 JBrowse link 7 40,217,269 40,306,327 RGD:8553427
RGD:11537356
G Cep41 centrosomal protein 41 JBrowse link 4 57,966,783 58,006,931 RGD:1600115
RGD:1624291
G Cep78 centrosomal protein 78 JBrowse link 1 233,185,815 233,214,876 RGD:1624291
G Cetn2 centrin 2 JBrowse link X 152,927,852 152,933,095 RGD:1624291
G Cetn3 centrin 3 JBrowse link 2 12,101,473 12,115,009 RGD:1624291
G Cetn4 centrin 4 JBrowse link 2 124,045,092 124,048,441 RGD:1600115
G Cfap100 cilia and flagella associated protein 100 JBrowse link 4 122,314,462 122,338,862 RGD:1624291
G Cfap126 cilia and flagella associated protein 126 JBrowse link 13 89,480,058 89,495,949 RGD:1624291
RGD:13792537
G Cfap157 cilia and flagella associated protein 157 JBrowse link 3 11,813,575 11,820,549 RGD:1624291
RGD:1600115
G Cfap20 cilia and flagella associated protein 20 JBrowse link 19 10,024,938 10,038,838 RGD:1600115
RGD:13792537
RGD:1624291
G Cfap410 cilia and flagella associated protein 410 JBrowse link 20 11,417,428 11,424,301 RGD:1624291
RGD:13792537
G Cfap70 cilia and flagella associated protein 70 JBrowse link 15 4,285,049 4,350,707 RGD:1624291
G Cibar1 CBY1 interacting BAR domain containing 1 JBrowse link 5 25,732,457 25,750,953 RGD:1624291
G Cibar2 CBY1 interacting BAR domain containing 2 JBrowse link 19 53,740,763 53,754,738 RGD:1624291
G Cilk1 ciliogenesis associated kinase 1 JBrowse link 8 85,413,998 85,473,374 RGD:1600115
RGD:1624291
G Csnk1a1 casein kinase 1, alpha 1 JBrowse link 18 56,887,722 56,910,610 RGD:1600115
RGD:1624291
G Csnk1d casein kinase 1, delta JBrowse link 10 110,147,786 110,182,413 RGD:1624291
G Cyld CYLD lysine 63 deubiquitinase JBrowse link 19 19,264,984 19,323,817 RGD:1600115
RGD:1624291
G Cys1 cystin 1 JBrowse link 6 43,844,937 43,862,131 RGD:1624291
G Daam1 dishevelled associated activator of morphogenesis 1 JBrowse link 6 94,606,675 94,739,026 RGD:1624291
G Dctn1 dynactin subunit 1 JBrowse link 4 114,876,770 114,896,567 RGD:1624291
G Disc1 DISC1 scaffold protein JBrowse link 19 57,818,838 58,069,992 RGD:1624291
G Dlg5 discs large MAGUK scaffold protein 5 JBrowse link 15 120,213 230,312 RGD:1624291
G Dync2i2 dynein 2 intermediate chain 2 JBrowse link 3 8,599,251 8,615,329 RGD:1624291
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 JBrowse link 6 7,900,962 7,933,795 RGD:1624291
RGD:13792537
RGD:1600115
G Dzip1 DAZ interacting zinc finger protein 1 JBrowse link 15 104,117,551 104,168,574 RGD:1624291
RGD:13792537
G Dzip1-ps1 DAZ interacting protein 1, pseudogene 1 JBrowse link 14 21,876,931 21,878,989 RGD:13792537
G Dzip1l DAZ interacting zinc finger protein 1-like JBrowse link 8 107,875,659 107,916,298 RGD:1600115
RGD:13792537
RGD:1624291
G Efhc2 EF-hand domain containing 2 JBrowse link X 5,825,551 6,026,398 RGD:1624291
G Entr1 endosome associated trafficking regulator 1 JBrowse link 3 3,827,498 3,834,219 RGD:1624291
RGD:13792537
G Erc1 ELKS/RAB6-interacting/CAST family member 1 JBrowse link 4 152,087,393 152,380,023 RGD:1600115
RGD:1624291
G Evc EvC ciliary complex subunit 1 JBrowse link 14 78,213,601 78,253,266 RGD:1624291
G Ezr ezrin JBrowse link 1 47,287,872 47,331,412 RGD:1624291
G Fam161a FAM161 centrosomal protein A JBrowse link 14 107,785,029 107,803,765 RGD:8553427
RGD:13792537
RGD:1624291
G Fam166a family with sequence similarity 166, member A JBrowse link 3 2,434,348 2,441,706 RGD:1624291
G Fam183a family with sequence similarity 183 member A JBrowse link 10 44,736,547 44,746,907 RGD:1624291
G Fank1 fibronectin type III and ankyrin repeat domains 1 JBrowse link 1 205,842,469 205,954,152 RGD:1600115
RGD:1624291
G Fbf1 Fas binding factor 1 JBrowse link 10 104,692,791 104,718,630 RGD:13792537
G Gas2l2 growth arrest-specific 2 like 2 JBrowse link 10 70,639,429 70,646,402 RGD:1624291
G Gas8 growth arrest specific 8 JBrowse link 19 56,316,367 56,335,873 RGD:1600115
RGD:1624291
G Gle1 GLE1 RNA export mediator JBrowse link 3 8,498,098 8,530,218 RGD:1624291
G Ift122 intraflagellar transport 122 JBrowse link 4 147,756,574 147,826,983 RGD:1624291
G Ift140 intraflagellar transport 140 JBrowse link 10 14,373,668 14,461,509 RGD:1624291
RGD:13792537
G Ift172 intraflagellar transport 172 JBrowse link 6 26,390,686 26,485,459 RGD:13792537
G Ift20 intraflagellar transport 20 JBrowse link 10 65,805,808 65,811,353 RGD:1624291
G Ift52 intraflagellar transport 52 JBrowse link 3 159,388,868 159,413,358 RGD:1624291
G Ift57 intraflagellar transport 57 JBrowse link 11 53,664,638 53,731,779 RGD:1624291
G Ift81 intraflagellar transport 81 JBrowse link 12 39,420,161 39,507,412 RGD:1624291
RGD:1600115
G Ift88 intraflagellar transport 88 JBrowse link 15 37,690,417 37,786,855 RGD:1624291
RGD:13792537
G Intu inturned planar cell polarity protein JBrowse link 2 127,589,325 127,611,705 RGD:1624291
RGD:1600115
G Iqcd IQ motif containing D JBrowse link 12 41,490,451 41,507,416 RGD:1624291
G Irs1 insulin receptor substrate 1 JBrowse link 9 88,033,668 88,086,488 RGD:1624291
G Jade1 jade family PHD finger 1 JBrowse link 2 128,461,147 128,514,298 RGD:1624291
G Kif17 kinesin family member 17 JBrowse link 5 156,628,409 156,665,752 RGD:1624291
G Kif7 kinesin family member 7 JBrowse link 1 141,434,183 141,452,592 RGD:1624291
G Kifap3 kinesin-associated protein 3 JBrowse link 13 82,072,497 82,217,256 RGD:1624291
G Kncn kinocilin JBrowse link 5 134,736,603 134,744,739 RGD:1624291
RGD:13792537
G Lca5 lebercilin LCA5 JBrowse link 8 90,926,309 90,984,271 RGD:1624291
RGD:14397561
G LOC108348055 B9 domain-containing protein 1 JBrowse link 10 49,019,745 49,029,851 RGD:1600115
G LOC690035 similar to Protein KIAA0586 JBrowse link 6 93,562,775 93,667,857 RGD:1624291
RGD:13792537
G Mapk15 mitogen-activated protein kinase 15 JBrowse link 7 117,041,287 117,061,799 RGD:1600115
RGD:1624291
G Mapre1 microtubule-associated protein, RP/EB family, member 1 JBrowse link 3 149,221,346 149,249,469 RGD:1624291
G Mark4 microtubule affinity regulating kinase 4 JBrowse link 1 80,335,517 80,367,366 RGD:1624291
G Mkks McKusick-Kaufman syndrome JBrowse link 3 129,866,542 129,885,213 RGD:1624291
RGD:13792537
G Mks1 MKS transition zone complex subunit 1 JBrowse link 10 75,149,814 75,160,481 RGD:1600115
RGD:1624291
G Mlf1 myeloid leukemia factor 1 JBrowse link 2 164,549,423 164,582,645 RGD:1624291
G Nedd1 NEDD1 gamma-tubulin ring complex targeting factor JBrowse link 7 33,544,097 33,584,406 RGD:1624291
RGD:13792537
G Nek4 NIMA-related kinase 4 JBrowse link 16 7,035,002 7,080,272 RGD:13204813
G Nme7 NME/NM23 family member 7 JBrowse link 13 82,607,844 82,737,383 RGD:1624291
G Nphp4 nephrocystin 4 JBrowse link 5 169,647,581 169,744,662 RGD:11537356
RGD:13792537
G Odf2 outer dense fiber of sperm tails 2 JBrowse link 3 8,449,733 8,495,764 RGD:1624291
G Odf2l outer dense fiber of sperm tails 2-like JBrowse link 2 250,995,018 251,032,908 RGD:1624291
G Ofd1 OFD1, centriole and centriolar satellite protein JBrowse link X 29,562,165 29,602,934 RGD:1624291
RGD:13792537
G Pcm1 pericentriolar material 1 JBrowse link 16 54,040,721 54,137,675 RGD:1624291
RGD:13792537
G Pcnt pericentrin JBrowse link 20 12,943,523 13,038,615 RGD:1624291
G Pifo primary cilia formation JBrowse link 2 208,616,592 208,633,961 RGD:1624291
RGD:13792537
G Pin1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 JBrowse link 8 21,669,236 21,680,615 RGD:1624291
G Pkd2 polycystin 2, transient receptor potential cation channel JBrowse link 14 6,602,004 6,645,257 RGD:1624291
G Pkhd1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin JBrowse link 9 26,164,969 26,736,704 RGD:1624291
G Poc1a POC1 centriolar protein A JBrowse link 8 114,982,764 115,050,844 RGD:1624291
G Poc1b POC1 centriolar protein B JBrowse link 7 41,304,119 41,404,360 RGD:1600115
RGD:1624291
G Ppp1r32 protein phosphatase 1, regulatory subunit 32 JBrowse link 1 226,518,405 226,527,903 RGD:1624291
G Psen2 presenilin 2 JBrowse link 13 98,513,600 98,539,347 RGD:1624291
G Psmb4 proteasome 20S subunit beta 4 JBrowse link 2 196,043,546 196,046,320 RGD:1624291
G Ptk2 protein tyrosine kinase 2 JBrowse link 7 114,436,419 114,611,317 RGD:1600115
RGD:1624291
G Ptpn23 protein tyrosine phosphatase, non-receptor type 23 JBrowse link 8 118,628,777 118,651,238 RGD:1600115
RGD:1624291
G Rab28 RAB28, member RAS oncogene family JBrowse link 14 73,888,968 73,963,209 RGD:8554122
G Rab8a RAB8A, member RAS oncogene family JBrowse link 16 19,355,047 19,376,776 RGD:1624291
G Rabep2 rabaptin, RAB GTPase binding effector protein 2 JBrowse link 1 197,839,583 197,855,953 RGD:1600115
RGD:1624291
G Rabl2 RAB, member of RAS oncogene family like 2 JBrowse link 7 130,556,056 130,564,764 RGD:1624291
G RGD1308544 LOC361192 JBrowse link 1 37,702,041 37,726,162 RGD:1624291
G RGD1561795 similar to RIKEN cDNA 1700012B09 JBrowse link 8 13,275,270 13,292,587 RGD:1600115
RGD:1624291
G Rilp Rab interacting lysosomal protein JBrowse link 10 63,658,451 63,662,428 RGD:13792537
G Rilpl1 Rab interacting lysosomal protein-like 1 JBrowse link 12 37,490,320 37,528,393 RGD:13792537
G Rilpl2 Rab interacting lysosomal protein-like 2 JBrowse link 12 37,544,918 37,556,453 RGD:13792537
G Rp2 RP2 activator of ARL3 GTPase JBrowse link X 2,066,298 2,116,661 RGD:1624291
G Rpgr retinitis pigmentosa GTPase regulator JBrowse link X 14,271,012 14,331,745 RGD:1624291
G Rpgrip1l Rpgrip1-like JBrowse link 19 17,115,266 17,208,055 RGD:1624291
RGD:11537356
G Rttn rotatin JBrowse link 18 86,071,884 86,247,486 RGD:1624291
RGD:13792537
G Saxo1 stabilizer of axonemal microtubules 1 JBrowse link 5 104,771,081 104,921,001 RGD:1624291
RGD:13792537
G Saxo2 stabilizer of axonemal microtubules 2 JBrowse link 1 144,586,260 144,601,358 RGD:13792537
G Saxol1 stabilizer of axonemal microtubules like 1 JBrowse link X 29,520,263 29,522,420 RGD:1600115
RGD:13792537
G Sdccag8 SHH signaling and ciliogenesis regulator SDCCAG8 JBrowse link 13 94,888,046 95,100,833 RGD:1624291
G Spaca9 sperm acrosome associated 9 JBrowse link 3 7,269,851 7,279,253 RGD:1600115
RGD:1624291
G Spata7 spermatogenesis associated 7 JBrowse link 6 122,603,248 122,648,718 RGD:1600115
RGD:13792537
RGD:1624291
G Ssna1 SS nuclear autoantigen 1 JBrowse link 3 2,489,017 2,490,481 RGD:1624291
RGD:13792537
G Ssx2ip SSX family member 2 interacting protein JBrowse link 2 252,263,323 252,296,049 RGD:1624291
RGD:1600115
G Tapt1 transmembrane anterior posterior transformation 1 JBrowse link 14 71,416,153 71,462,646 RGD:1624291
RGD:13792537
G Tbata thymus, brain and testes associated JBrowse link 20 30,786,239 30,804,354 RGD:1624291
G Tbc1d30 TBC1 domain family, member 30 JBrowse link 7 63,361,443 63,409,760 RGD:1624291
G Tbc1d7 TBC1 domain family, member 7 JBrowse link 17 23,774,793 23,792,389 RGD:1624291
G Togaram1 TOG array regulator of axonemal microtubules 1 JBrowse link 6 86,713,588 86,780,134 RGD:1624291
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase JBrowse link 5 56,554,956 56,566,503 RGD:1624291
RGD:13792537
G Traf3ip1 TRAF3 interacting protein 1 JBrowse link 9 98,621,499 98,658,223 RGD:1624291
RGD:13792537
G Tsga10ip testis specific 10 interacting protein JBrowse link 1 220,772,592 220,786,952 RGD:13792537
G Ttbk2 tau tubulin kinase 2 JBrowse link 3 112,677,932 112,789,615 RGD:1624291
RGD:13792537
G Ttc26 tetratricopeptide repeat domain 26 JBrowse link 4 66,090,178 66,147,998 RGD:1624291
RGD:13792537
G Ttc30a1 tetratricopeptide repeat domain 30A1 JBrowse link 3 62,800,932 62,803,373 RGD:13792537
G Ttc30b tetratricopeptide repeat domain 30B JBrowse link 3 62,758,754 62,761,325 RGD:13792537
G Ttc8 tetratricopeptide repeat domain 8 JBrowse link 6 122,920,308 122,974,525 RGD:1624291
RGD:13792537
G Ttll6 tubulin tyrosine ligase like 6 JBrowse link 10 83,954,221 83,999,542 RGD:1624291
G Tuba3a tubulin, alpha 3A JBrowse link 4 157,789,874 157,798,763 RGD:1600115
G Tuba3b tubulin, alpha 3B JBrowse link 4 179,905,154 179,910,703 RGD:1600115
G Tubg1 tubulin, gamma 1 JBrowse link 10 89,030,865 89,037,455 RGD:1624291
G Ush1g USH1 protein network component sans JBrowse link 10 103,866,566 103,873,416 RGD:1624291
G Ush2a usherin JBrowse link 13 106,750,738 107,434,195 RGD:1624291
G Wdr11 WD repeat domain 11 JBrowse link 1 202,770,810 202,816,336 RGD:1624291
G Wdr35 WD repeat domain 35 JBrowse link 6 34,094,291 34,152,048 RGD:1624291
RGD:1600115
G Whrn whirlin JBrowse link 5 79,235,541 79,317,206 RGD:1624291
RGD:1600115
G Wrap73 WD repeat containing, antisense to TP73 JBrowse link 5 171,441,471 171,455,795 RGD:1624291
RGD:1600115
kinociliary basal body term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdc14a cell division cycle 14A JBrowse link 2 219,302,577 219,458,345 RGD:1624291
RGD:13792537
G Ift20 intraflagellar transport 20 JBrowse link 10 65,805,808 65,811,353 RGD:1624291
G Mkks McKusick-Kaufman syndrome JBrowse link 3 129,866,542 129,885,213 RGD:1624291
RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20300
    cellular anatomical entity 19956
      microtubule organizing center 768
        ciliary basal body 168
          kinociliary basal body 3
          left anterior basal body 0
          left caudal basal body 0
          left posteriolateral basal body 0
          left ventral basal body 0
          right anterior basal body 0
          right caudal basal body 0
          right posteriolateral basal body 0
          right ventral basal body 0
Path 2
Term Annotations click to browse term
  cellular_component 20300
    cellular anatomical entity 19956
      organelle 12977
        non-membrane-bounded organelle 4856
          intracellular non-membrane-bounded organelle 4837
            cytoskeleton 2115
              microtubule cytoskeleton 1251
                microtubule organizing center 768
                  ciliary basal body 168
                    kinociliary basal body 3
                    left anterior basal body 0
                    left caudal basal body 0
                    left posteriolateral basal body 0
                    left ventral basal body 0
                    right anterior basal body 0
                    right caudal basal body 0
                    right posteriolateral basal body 0
                    right ventral basal body 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.