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ONTOLOGY REPORT - ANNOTATIONS


Term:cytoplasmic ribonucleoprotein granule
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Accession:GO:0036464 term browser browse the term
Definition:A ribonucleoprotein granule located in the cytoplasm.
Synonyms:narrow_synonym: Staufen granule


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cytoplasmic ribonucleoprotein granule term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actb actin, beta JBrowse link 12 13,715,843 13,718,813 RGD:1624291
RGD:1600115
G Ago3 argonaute RISC catalytic component 3 JBrowse link 5 144,355,792 144,436,509 RGD:1624291
G Bard1 BRCA1 associated RING domain 1 JBrowse link 9 78,297,723 78,368,777 RGD:1624291
RGD:1600115
G Blnk B-cell linker JBrowse link 1 260,187,023 260,254,490 RGD:1624291
RGD:1600115
G Cdc42 cell division cycle 42 JBrowse link 5 155,690,267 155,728,385 RGD:1624291
G Cdk9 cyclin-dependent kinase 9 JBrowse link 3 11,742,269 11,747,117 RGD:1624291
RGD:1600115
G Chtop chromatin target of PRMT1 JBrowse link 2 189,887,850 189,900,079 RGD:1624291
G Ckap4 cytoskeleton-associated protein 4 JBrowse link 7 24,935,243 24,947,595 RGD:1624291
G Ctsh cathepsin H JBrowse link 8 97,439,155 97,458,293 RGD:1624291
RGD:1600115
G Dcp1a decapping mRNA 1A JBrowse link 16 6,542,415 6,583,856 RGD:1624291
G Dcp2 decapping mRNA 2 JBrowse link 18 35,489,274 35,671,676 RGD:1624291
G Ddx6 DEAD-box helicase 6 JBrowse link 8 48,924,768 48,961,394 RGD:1624291
G Dhx9 DExH-box helicase 9 JBrowse link 13 70,885,503 70,922,278 RGD:1624291
G Dync1i1 dynein cytoplasmic 1 intermediate chain 1 JBrowse link 4 30,807,755 31,121,097 RGD:1624291
RGD:1600115
G Edc3 enhancer of mRNA decapping 3 JBrowse link 8 62,482,126 62,527,665 RGD:1624291
G Edc4 enhancer of mRNA decapping 4 JBrowse link 19 37,852,659 37,864,651 RGD:1624291
G Eid1 EP300 interacting inhibitor of differentiation 1 JBrowse link 3 117,938,500 117,940,219 RGD:1624291
RGD:1600115
G Eif4e eukaryotic translation initiation factor 4E JBrowse link 2 243,819,616 243,853,987 RGD:1624291
G Flg filaggrin JBrowse link 2 193,565,401 193,574,297 RGD:1624291
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:1601176
RGD:13792537
RGD:1624291
RGD:1600115
G Fxr1 FMR1 autosomal homolog 1 JBrowse link 2 120,529,716 120,570,356 RGD:13792537
G Fxr2 FMR1 autosomal homolog 2 JBrowse link 10 56,237,814 56,257,877 RGD:13792537
G Gabpb1 GA binding protein transcription factor subunit beta 1 JBrowse link 3 119,091,739 119,135,391 RGD:1624291
G Ghr growth hormone receptor JBrowse link 2 53,149,225 53,413,954 RGD:1624291
RGD:1600115
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 13 96,222,093 96,238,845 RGD:1624291
RGD:13792537
RGD:1600115
G Hoxd10 homeo box D10 JBrowse link 3 61,614,133 61,617,342 RGD:1624291
RGD:1600115
G Icoslg inducible T-cell co-stimulator ligand JBrowse link 20 11,330,000 11,340,307 RGD:1624291
G Ina internexin neuronal intermediate filament protein, alpha JBrowse link 1 266,782,835 266,794,389 RGD:1624291
RGD:1600115
G Iqgap1 IQ motif containing GTPase activating protein 1 JBrowse link 1 142,525,041 142,615,673 RGD:1624291
G Lig4 DNA ligase 4 JBrowse link 16 85,331,771 85,339,496 RGD:1624291
RGD:1600115
G Lsm14a LSM14A mRNA processing body assembly factor JBrowse link 1 90,200,866 90,246,292 RGD:1624291
G Mapt microtubule-associated protein tau JBrowse link 10 92,289,002 92,386,517 RGD:1624291
RGD:1600115
G Mcc MCC regulator of WNT signaling pathway JBrowse link 18
1
35,683,185
12,006,663
35,817,117
12,128,849
RGD:1624291
RGD:1600115
G Mov10 Mov10 RISC complex RNA helicase JBrowse link 2 207,277,088 207,301,245 RGD:1624291
G Myh1 myosin heavy chain 1 JBrowse link 10 53,740,841 53,764,610 RGD:1624291
G Ncl nucleolin JBrowse link 9 93,369,119 93,377,643 RGD:1600115
RGD:1624291
G Nfkbiz NFKB inhibitor zeta JBrowse link 11 47,243,342 47,271,487 RGD:1624291
RGD:1600115
G Pabpc1 poly(A) binding protein, cytoplasmic 1 JBrowse link 7 75,409,581 75,421,874 RGD:1624291
G Pard3 par-3 family cell polarity regulator JBrowse link 19 60,017,746 60,580,628 RGD:1624291
RGD:1600115
G Patl1 PAT1 homolog 1, processing body mRNA decay factor JBrowse link 1 228,337,756 228,369,719 RGD:1624291
G Pcbp1 poly(rC) binding protein 1 JBrowse link 4 118,327,185 118,329,223 RGD:1624291
G Pitpnm1 phosphatidylinositol transfer protein, membrane-associated 1 JBrowse link 1 219,348,672 219,362,094 RGD:1624291
RGD:1600115
G Pms2 PMS1 homolog 2, mismatch repair system component JBrowse link 12 12,714,394 12,738,654 RGD:1624291
RGD:1600115
G Poldip3 DNA polymerase delta interacting protein 3 JBrowse link 7 123,992,167 124,020,596 RGD:1624291
RGD:1600115
G Poli DNA polymerase iota JBrowse link 18 65,749,107 65,768,805 RGD:1624291
RGD:1600115
G Psmc2 proteasome 26S subunit, ATPase 2 JBrowse link 4 9,867,132 9,881,383 RGD:1624291
RGD:1600115
G Rac1 Rac family small GTPase 1 JBrowse link 12 13,090,316 13,111,841 RGD:1624291
G Rock2 Rho-associated coiled-coil containing protein kinase 2 JBrowse link 6 42,180,864 42,289,910 RGD:1624291
RGD:1600115
G Rpl28 ribosomal protein L28 JBrowse link 1 72,619,282 72,621,941 RGD:1624291
G Rpl6 ribosomal protein L6 JBrowse link 12 40,877,578 40,882,032 RGD:1624291
G Rplp0 ribosomal protein lateral stalk subunit P0 JBrowse link 12 46,791,528 46,794,797 RGD:1624291
G Rps4x ribosomal protein S4, X-linked JBrowse link X 72,074,108 72,078,551 RGD:1624291
G Rps6 ribosomal protein S6 JBrowse link 5 105,197,821 105,200,681 RGD:1624291
G Sarnp SAP domain containing ribonucleoprotein JBrowse link 7 3,246,220 3,300,467 RGD:1624291
RGD:1600115
G Serpinb1a serpin family B member 1A JBrowse link 17 32,903,089 32,911,498 RGD:1624291
G Shb SH2 domain containing adaptor protein B JBrowse link 5 60,970,650 61,077,881 RGD:1624291
G Slc39a2 solute carrier family 39 member 2 JBrowse link 15 28,295,044 28,297,688 RGD:1624291
RGD:1600115
G Smn1 survival of motor neuron 1, telomeric JBrowse link 2 30,360,101 30,371,147 RGD:1624291
RGD:1600115
G Sncaip synuclein, alpha interacting protein JBrowse link 18 47,739,284 47,877,679 RGD:1624291
RGD:1600115
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 JBrowse link 3 137,138,082 137,147,575 RGD:1624291
RGD:1600115
G Socs1 suppressor of cytokine signaling 1 JBrowse link 10 4,956,795 4,958,472 RGD:1624291
RGD:1600115
G Stau1 staufen double-stranded RNA binding protein 1 JBrowse link 3 163,703,204 163,748,996 RGD:1624291
G Taf5l TATA-box binding protein associated factor 5 like JBrowse link 19 56,781,854 56,801,005 RGD:1624291
G Tstd1 thiosulfate sulfurtransferase like domain containing 1 JBrowse link 13 89,805,652 89,807,355 RGD:1624291
RGD:1600115
G Tuba1a tubulin, alpha 1A JBrowse link 7 140,637,287 140,640,953 RGD:1624291
G Tubb5 tubulin, beta 5 class I JBrowse link 20 3,422,448 3,426,420 RGD:1624291
G Tut4 terminal uridylyl transferase 4 JBrowse link 5 128,063,880 128,168,726 RGD:1624291
G Upf2 UPF2, regulator of nonsense mediated mRNA decay JBrowse link 17 76,176,379 76,287,246 RGD:1624291
RGD:1600115
G Usp3 ubiquitin specific peptidase 3 JBrowse link 8 72,207,970 72,284,871 RGD:1624291
RGD:1600115
G Ythdf2 YTH N(6)-methyladenosine RNA binding protein 2 JBrowse link 5 150,364,490 150,390,173 RGD:1624291
G Zc3h12a zinc finger CCCH type containing 12A JBrowse link 5 143,111,342 143,120,131 RGD:1624291
G Zc3h12d zinc finger CCCH type containing 12D JBrowse link 1 1,937,620 1,972,919 RGD:1624291
chromatoid body term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arntl aryl hydrocarbon receptor nuclear translocator-like JBrowse link 1 178,039,002 178,137,469 RGD:1600115
RGD:1624291
G Clock clock circadian regulator JBrowse link 14 34,418,226 34,502,218 RGD:1600115
RGD:1624291
G Ddx25 DEAD-box helicase 25 JBrowse link 8 36,744,686 36,760,720 RGD:1600115
RGD:1624291
G Ddx4 DEAD-box helicase 4 JBrowse link 2 44,447,610 44,504,263 RGD:1624291
RGD:10755411
G Ddx6 DEAD-box helicase 6 JBrowse link 8 48,924,768 48,961,394 RGD:10755411
G Eif4e eukaryotic translation initiation factor 4E JBrowse link 2 243,819,616 243,853,987 RGD:1624291
G Mael maelstrom spermatogenic transposon silencer JBrowse link 13 84,412,569 84,452,140 RGD:1624291
G Marcks myristoylated alanine rich protein kinase C substrate JBrowse link 20 42,966,140 42,971,838 RGD:9685331
G Nsun2 NOP2/Sun RNA methyltransferase 2 JBrowse link 1 36,295,650 36,319,906 RGD:1624291
G Piwil1 piwi-like RNA-mediated gene silencing 1 JBrowse link 12 31,608,641 31,629,961 RGD:1624291
G Piwil2 piwi-like RNA-mediated gene silencing 2 JBrowse link 15 52,037,693 52,116,277 RGD:1624291
G Slc25a54 solute carrier family 25, member 54 JBrowse link 2 211,880,241 211,927,191 RGD:1600115
G Tdrd1 tudor domain containing 1 JBrowse link 1 277,639,670 277,685,236 RGD:1624291
G Tdrd5 tudor domain containing 5 JBrowse link 13 73,872,637 73,922,640 RGD:1600115
RGD:1624291
G Tdrd6 tudor domain containing 6 JBrowse link 9 19,917,613 19,932,888 RGD:1624291
G Tdrd7 tudor domain containing 7 JBrowse link 5 61,557,909 61,631,719 RGD:1624291
cytoplasmic stress granule term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atxn2 ataxin 2 JBrowse link 12 40,264,601 40,335,637 RGD:1624291
RGD:13792537
G Atxn2l ataxin 2-like JBrowse link 1 197,908,087 197,920,400 RGD:1624291
RGD:13792537
G Bpi bactericidal/permeability-increasing protein JBrowse link 3 154,741,627 154,768,584 RGD:1624291
G Caprin1 cell cycle associated protein 1 JBrowse link 3 93,701,830 93,789,580 RGD:8554681
RGD:1600115
RGD:1624291
G Casc3 CASC3 exon junction complex subunit JBrowse link 10 86,724,534 86,744,485 RGD:1600115
G Cirbp cold inducible RNA binding protein JBrowse link 7 12,400,066 12,405,054 RGD:1624291
RGD:1600115
G Ctsg cathepsin G JBrowse link 15 35,107,333 35,113,678 RGD:1600115
RGD:1624291
G Ddx1 DEAD-box helicase 1 JBrowse link 6 38,422,892 38,453,762 RGD:1624291
RGD:1600115
G Ddx19a DEAD-box helicase 19A JBrowse link 19 43,251,510 43,271,865 RGD:13792537
G Ddx19b DEAD-box helicase 19B JBrowse link 19 43,217,199 43,246,196 RGD:13792537
G Ddx25 DEAD-box helicase 25 JBrowse link 8 36,744,686 36,760,720 RGD:13792537
G Ddx3x DEAD-box helicase 3, X-linked JBrowse link X 10,400,363 10,414,010 RGD:1624291
G Ddx6 DEAD-box helicase 6 JBrowse link 8 48,924,768 48,961,394 RGD:1624291
RGD:13792537
G Dhx36 DEAH-box helicase 36 JBrowse link 2 152,785,844 152,824,549 RGD:1624291
G Dyrk3 dual specificity tyrosine phosphorylation regulated kinase 3 JBrowse link 13 47,906,230 47,916,877 RGD:1600115
RGD:1624291
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha JBrowse link 6 102,048,372 102,073,041 RGD:1624291
RGD:1600115
G Eif4e eukaryotic translation initiation factor 4E JBrowse link 2 243,819,616 243,853,987 RGD:1624291
RGD:1600115
G Elavl1 ELAV like RNA binding protein 1 JBrowse link 12 2,461,502 2,502,432 RGD:1600115
RGD:1624291
G Endov endonuclease V JBrowse link 10 108,630,723 108,646,679 RGD:1624291
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:1624291
RGD:10059582
RGD:11667962
G G3bp1 G3BP stress granule assembly factor 1 JBrowse link 10 40,812,858 40,846,252 RGD:1624291
G G3bp2 G3BP stress granule assembly factor 2 JBrowse link 14 17,437,145 17,523,254 RGD:1624291
G Gigyf2 GRB10 interacting GYF protein 2 JBrowse link 9 94,425,191 94,550,431 RGD:1624291
G Grb7 growth factor receptor bound protein 7 JBrowse link 10 86,393,186 86,408,893 RGD:1624291
RGD:1600115
G Habp4 hyaluronan binding protein 4 JBrowse link 17 1,679,561 1,702,245 RGD:1624291
RGD:1600115
G Hnrnpk heterogeneous nuclear ribonucleoprotein K JBrowse link 17 6,664,730 6,676,753 RGD:1624291
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 JBrowse link 10 83,774,178 83,823,323 RGD:1624291
RGD:1600115
G Khsrp KH-type splicing regulatory protein JBrowse link 9 10,013,795 10,023,670 RGD:1624291
RGD:1600115
G Kpna2 karyopherin subunit alpha 2 JBrowse link 10 95,200,029 95,212,111 RGD:1624291
G Kpnb1 karyopherin subunit beta 1 JBrowse link 10 85,096,517 85,124,641 RGD:1600115
RGD:1624291
G Larp1 La ribonucleoprotein 1, translational regulator JBrowse link 10 43,435,738 43,501,186 RGD:1624291
G Larp4 La ribonucleoprotein 4 JBrowse link 7 141,630,229 141,676,242 RGD:1624291
G Larp4b La ribonucleoprotein 4B JBrowse link 17 63,236,007 63,317,298 RGD:1624291
G Lin28a lin-28 homolog A JBrowse link 5 152,230,343 152,247,873 RGD:1624291
G Lsm14a LSM14A mRNA processing body assembly factor JBrowse link 1 90,200,866 90,246,292 RGD:1624291
G Mbnl1 muscleblind-like splicing regulator 1 JBrowse link 2 150,698,248 150,867,791 RGD:1624291
G Mcrip1 MAPK regulated co-repressor interacting protein 1 JBrowse link 10 109,720,144 109,727,595 RGD:1624291
RGD:1600115
G Mcrip2 MAPK regulated co-repressor interacting protein 2 JBrowse link 10 15,230,801 15,235,740 RGD:1624291
G Nanos3 nanos C2HC-type zinc finger 3 JBrowse link 19 25,284,907 25,288,680 RGD:1624291
G Nufip2 nuclear FMR1 interacting protein 2 JBrowse link 10 65,168,145 65,200,210 RGD:1624291
RGD:13792537
G Nxf1 nuclear RNA export factor 1 JBrowse link 1 224,957,535 224,970,728 RGD:1600115
G Ogfod1 2-oxoglutarate and iron-dependent oxygenase domain containing 1 JBrowse link 19 11,425,301 11,451,085 RGD:1624291
G Pabpc1 poly(A) binding protein, cytoplasmic 1 JBrowse link 7 75,409,581 75,421,874 RGD:1600115
RGD:13792537
RGD:1624291
G Pabpc1l poly(A) binding protein, cytoplasmic 1-like JBrowse link 3 160,410,733 160,447,073 RGD:13792537
G Pabpc2 poly(A) binding protein, cytoplasmic 2 JBrowse link 18 32,964,763 32,967,031 RGD:13792537
G Pabpc4 poly(A) binding protein, cytoplasmic 4 JBrowse link 5 140,978,893 140,994,732 RGD:1624291
RGD:13792537
G Pabpc4l poly(A) binding protein, cytoplasmic 4-like JBrowse link 2 130,656,212 130,658,202 RGD:13792537
G Pabpc5 poly A binding protein, cytoplasmic 5 JBrowse link X 92,130,292 92,133,756 RGD:13792537
G Pabpc6 poly(A) binding protein, cytoplasmic 6 JBrowse link 1 51,619,875 51,622,951 RGD:13792537
G Pqbp1 polyglutamine binding protein 1 JBrowse link X 15,448,570 15,453,130 RGD:1624291
RGD:1600115
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 5 124,568,845 124,642,569 RGD:1600115
RGD:1624291
G Pum1 pumilio RNA-binding family member 1 JBrowse link 5 148,781,239 148,911,776 RGD:1624291
G Pum2 pumilio RNA-binding family member 2 JBrowse link 6 33,786,184 33,865,693 RGD:1624291
G Rbfox1 RNA binding fox-1 homolog 1 JBrowse link 10 8,312,961 10,437,778 RGD:1624291
G Rbm4 RNA binding motif protein 4 JBrowse link 1 220,038,403 220,049,756 RGD:1624291
G Rbpms RNA binding protein, mRNA processing factor JBrowse link 16 61,954,569 62,109,998 RGD:1624291
G Rc3h1 ring finger and CCCH-type domains 1 JBrowse link 13 78,723,028 78,794,663 RGD:1624291
G RGD1359108 similar to RIKEN cDNA 3110043O21 JBrowse link 5 50,666,444 50,691,523 RGD:1600115
RGD:1624291
G RGD1562451 similar to Pabpc4_predicted protein JBrowse link 12 3,921,612 3,924,757 RGD:13792537
G Rnf135 ring finger protein 135 JBrowse link 10 67,531,989 67,551,237 RGD:1624291
RGD:1600115
G Rock1 Rho-associated coiled-coil containing protein kinase 1 JBrowse link 18 1,273,490 1,390,790 RGD:1600115
RGD:13792537
RGD:1624291
G Rptor regulatory associated protein of MTOR, complex 1 JBrowse link 10 108,750,620 109,058,691 RGD:1624291
G Stau1 staufen double-stranded RNA binding protein 1 JBrowse link 3 163,703,204 163,748,996 RGD:1624291
G Stau2 staufen double-stranded RNA binding protein 2 JBrowse link 5 2,257,910 2,497,429 RGD:10043171
G Tia1 TIA1 cytotoxic granule-associated RNA binding protein JBrowse link 4 118,207,845 118,238,246 RGD:1624291
RGD:10059581
G Tial1 Tia1 cytotoxic granule-associated RNA binding protein-like 1 JBrowse link 1 199,844,854 199,865,843 RGD:10059425
RGD:1624291
G Trim25 tripartite motif-containing 25 JBrowse link 10 76,343,847 76,362,159 RGD:1624291
G Vcp valosin-containing protein JBrowse link 5 58,426,548 58,445,953 RGD:1600115
RGD:1624291
G Ybx1 Y box binding protein 1 JBrowse link 5 138,319,754 138,336,721 RGD:1624291
RGD:1600115
G Zfand1 zinc finger AN1-type containing 1 JBrowse link 2 93,656,895 93,666,745 RGD:1624291
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1600115
RGD:1624291
neuronal ribonucleoprotein granule term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arc activity-regulated cytoskeleton-associated protein JBrowse link 7 115,907,097 115,911,059 RGD:1624291
G Ckap5 cytoskeleton associated protein 5 JBrowse link 3 80,424,320 80,526,583 RGD:1624291
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:8553560
RGD:1624291
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 4 81,237,496 81,241,281 RGD:9685480
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B JBrowse link 10 34,955,713 34,961,662 RGD:9999187
G Htt huntingtin JBrowse link 14 81,105,139 81,254,637 RGD:6902916
G Kif3c kinesin family member 3C JBrowse link 6 27,768,943 27,815,611 RGD:8553560
G Pqbp1 polyglutamine binding protein 1 JBrowse link X 15,448,570 15,453,130 RGD:1624291
RGD:1600115
G Uhmk1 U2AF homology motif kinase 1 JBrowse link 13 88,521,625 88,536,728 RGD:1624291
RGD:13792537
P granule term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07042226.1 RGD:13792537
G Carhsp1 calcium regulated heat stable protein 1 JBrowse link 10 7,041,510 7,055,107 RGD:1624291
RGD:1600115
G Ddx3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 JBrowse link Y 1,217,800 1,238,454 RGD:13792537
G Ddx3x DEAD-box helicase 3, X-linked JBrowse link X 10,400,363 10,414,010 RGD:13792537
G Ddx3y DEAD-box helicase 3, Y-linked JBrowse link 13 105,408,179 105,411,348 RGD:13792537
G Ddx4 DEAD-box helicase 4 JBrowse link 2 44,447,610 44,504,263 RGD:13792537
G Helz helicase with zinc finger JBrowse link 10 95,767,754 95,911,025 RGD:13792537
G Henmt1 HEN methyltransferase 1 JBrowse link 2 211,740,571 211,753,718 RGD:1600115
G LOC687679 similar to small nuclear ribonucleoprotein polypeptide G JBrowse link 1 91,588,215 91,588,629 RGD:13792537
G Mael maelstrom spermatogenic transposon silencer JBrowse link 13 84,412,569 84,452,140 RGD:1624291
RGD:13792537
G Mov10 Mov10 RISC complex RNA helicase JBrowse link 2 207,277,088 207,301,245 RGD:13792537
G Mov10l1 Mov10 like RISC complex RNA helicase 1 JBrowse link 7 129,973,391 130,039,306 RGD:1624291
RGD:13792537
G Piwil2 piwi-like RNA-mediated gene silencing 2 JBrowse link 15 52,037,693 52,116,277 RGD:1624291
G Piwil4 piwi-like RNA-mediated gene silencing 4 JBrowse link 8 13,208,774 13,251,970 RGD:1624291
RGD:1600115
G Snrpg small nuclear ribonucleoprotein polypeptide G JBrowse link 4 118,167,267 118,174,846 RGD:13792537
G Tdrd1 tudor domain containing 1 JBrowse link 1 277,639,670 277,685,236 RGD:1624291
G Tdrd6 tudor domain containing 6 JBrowse link 9 19,917,613 19,932,888 RGD:1624291
G Tdrd7 tudor domain containing 7 JBrowse link 5 61,557,909 61,631,719 RGD:1624291
P-body term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07002945.1 RGD:1600115
G AABR07066144.1 RGD:13792537
G AC126899.1 RGD:13792537
G Ago1 argonaute RISC component 1 JBrowse link 5 144,444,390 144,479,430 RGD:1624291
G Ago2 argonaute RISC catalytic component 2 JBrowse link 7 114,339,607 114,377,277 RGD:1624291
RGD:1600115
G Ago3 argonaute RISC catalytic component 3 JBrowse link 5 144,355,792 144,436,509 RGD:1600115
G Ago4 argonaute RISC component 4 JBrowse link 5 144,501,875 144,557,165 RGD:1624291
G Aicda activation-induced cytidine deaminase JBrowse link 4 155,359,909 155,371,104 RGD:13792537
G Ajuba ajuba LIM protein JBrowse link 15 33,208,210 33,218,456 RGD:1624291
RGD:13792537
RGD:1600115
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 JBrowse link 7 121,108,108 121,128,346 RGD:1624291
RGD:13792537
G Btbd1 BTB domain containing 1 JBrowse link 1 143,609,729 143,647,124 RGD:1624291
RGD:13792537
G Btbd2 BTB domain containing 2 JBrowse link 7 11,929,859 11,943,559 RGD:1624291
RGD:13792537
G Caprin1 cell cycle associated protein 1 JBrowse link 3 93,701,830 93,789,580 RGD:8554681
G Carhsp1 calcium regulated heat stable protein 1 JBrowse link 10 7,041,510 7,055,107 RGD:1600115
G Cnot1 CCR4-NOT transcription complex, subunit 1 JBrowse link 19 9,668,186 9,761,605 RGD:1624291
RGD:13792537
G Cnot2 CCR4-NOT transcription complex, subunit 2 JBrowse link 7 59,526,105 59,617,307 RGD:13792537
G Cnot3 CCR4-NOT transcription complex, subunit 3 JBrowse link 1 64,130,823 64,147,066 RGD:1624291
RGD:13792537
G Cnot7 CCR4-NOT transcription complex, subunit 7 JBrowse link 16 54,899,452 54,918,616 RGD:1624291
RGD:13792537
G Cnot8 CCR4-NOT transcription complex, subunit 8 JBrowse link 10 43,538,150 43,551,271 RGD:13792537
G Cnot9 CCR4-NOT transcription complex subunit 9 JBrowse link 9 81,783,349 81,808,815 RGD:1624291
RGD:13792537
RGD:1600115
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 JBrowse link 1 143,171,457 143,278,485 RGD:1600115
G Dcp1a decapping mRNA 1A JBrowse link 16 6,542,415 6,583,856 RGD:1624291
RGD:13792537
G Dcp1b decapping mRNA 1B JBrowse link 4 151,249,654 151,287,018 RGD:1624291
RGD:13792537
G Dcp2 decapping mRNA 2 JBrowse link 18 35,489,274 35,671,676 RGD:1624291
RGD:13792537
G Dcps decapping enzyme, scavenger JBrowse link 8 36,321,992 36,374,665 RGD:13792537
G Ddx6 DEAD-box helicase 6 JBrowse link 8 48,924,768 48,961,394 RGD:1624291
RGD:13792537
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 JBrowse link 9 93,767,837 94,161,106 RGD:1624291
RGD:13792537
G Edc3 enhancer of mRNA decapping 3 JBrowse link 8 62,482,126 62,527,665 RGD:13792537
G Edc4 enhancer of mRNA decapping 4 JBrowse link 19 37,852,659 37,864,651 RGD:1624291
RGD:13792537
RGD:1600115
G Eif4e eukaryotic translation initiation factor 4E JBrowse link 2 243,819,616 243,853,987 RGD:1624291
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 JBrowse link 14 83,412,843 83,455,694 RGD:1624291
G Garre1 granule associated Rac and RHOG effector 1 JBrowse link 1 90,097,331 90,176,119 RGD:1624291
G Hax1 HCLS1 associated protein X-1 JBrowse link 2 189,330,900 189,333,305 RGD:1600115
G Kif5a kinesin family member 5A JBrowse link 7 70,515,832 70,552,897 RGD:12791272
G Limd1 LIM domains containing 1 JBrowse link 8 132,553,218 132,598,826 RGD:1624291
RGD:13792537
G Lin28a lin-28 homolog A JBrowse link 5 152,230,343 152,247,873 RGD:1624291
G LOC100360750 Sm protein F-like JBrowse link 13 47,380,376 47,382,933 RGD:13792537
G LOC100912393 mRNA-decapping enzyme 2-like JBrowse link 9 3,940,948 3,965,964 RGD:13792537
G Lsm1 LSM1 homolog, mRNA degradation associated JBrowse link 16 71,046,475 71,057,883 RGD:1624291
RGD:13792537
G Lsm14a LSM14A mRNA processing body assembly factor JBrowse link 1 90,200,866 90,246,292 RGD:1624291
RGD:13792537
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 20 4,966,817 4,970,567 RGD:13792537
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 4 123,162,086 123,168,330 RGD:13792537
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 16 20,506,399 20,511,818 RGD:13792537
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 19 32,770,640 32,785,215 RGD:13792537
G Mir23a microRNA 23a JBrowse link 19 25,318,582 25,318,656 RGD:1624291
G Mov10 Mov10 RISC complex RNA helicase JBrowse link 2 207,277,088 207,301,245 RGD:1624291
G Nanos2 nanos C2HC-type zinc finger 2 JBrowse link 1 79,894,450 79,895,910 RGD:1624291
G Nanos3 nanos C2HC-type zinc finger 3 JBrowse link 19 25,284,907 25,288,680 RGD:1624291
G Noct nocturnin JBrowse link 2 140,286,661 140,306,869 RGD:1624291
G Pan2 poly(A) specific ribonuclease subunit PAN2 JBrowse link 7 2,717,021 2,736,541 RGD:1624291
RGD:1600115
RGD:13792537
G Pan3 poly(A) specific ribonuclease subunit PAN3 JBrowse link 12 9,214,116 9,331,901 RGD:1624291
RGD:13792537
G Patl1 PAT1 homolog 1, processing body mRNA decay factor JBrowse link 1 228,337,756 228,369,719 RGD:1600115
RGD:13792537
RGD:1624291
G Patl2 PAT1 homolog 2 JBrowse link 3 114,065,814 114,075,404 RGD:1624291
RGD:13792537
G Pnrc2 proline-rich nuclear receptor coactivator 2 JBrowse link 5 154,220,552 154,223,536 RGD:1624291
RGD:13792537
RGD:1600115
G Polr2d RNA polymerase II subunit D JBrowse link 18 24,570,762 24,577,894 RGD:13792537
G Polr2g RNA polymerase II subunit G JBrowse link 1 224,991,250 224,998,355 RGD:13792537
G Psma2 proteasome 20S subunit alpha 2 JBrowse link 17 53,091,937 53,102,324 RGD:1624291
RGD:1600115
G Psma4 proteasome 20S subunit alpha 4 JBrowse link 8 59,532,456 59,539,916 RGD:1624291
RGD:1600115
G Psma6 proteasome 20S subunit alpha 6 JBrowse link 6 76,174,460 76,205,429 RGD:1624291
RGD:1600115
G Psmc2 proteasome 26S subunit, ATPase 2 JBrowse link 4 9,867,132 9,881,383 RGD:1624291
RGD:1600115
G Psmc3 proteasome 26S subunit, ATPase 3 JBrowse link 3 79,876,938 79,882,319 RGD:1600115
RGD:1624291
G Pum1 pumilio RNA-binding family member 1 JBrowse link 5 148,781,239 148,911,776 RGD:1624291
G Rc3h1 ring finger and CCCH-type domains 1 JBrowse link 13 78,723,028 78,794,663 RGD:1624291
G RGD1359108 similar to RIKEN cDNA 3110043O21 JBrowse link 5 50,666,444 50,691,523 RGD:1600115
RGD:1624291
G Samd4a sterile alpha motif domain containing 4A JBrowse link 15 23,666,543 23,879,067 RGD:13792537
G Samd4b sterile alpha motif domain containing 4B JBrowse link 1 85,324,017 85,362,266 RGD:13792537
G Shfl shiftless antiviral inhibitor of ribosomal frameshifting JBrowse link 8 21,890,214 21,896,045 RGD:1600115
RGD:1624291
G Sqstm1 sequestosome 1 JBrowse link 10 35,704,728 35,716,316 RGD:1624291
RGD:1600115
G Syne1 spectrin repeat containing nuclear envelope protein 1 JBrowse link 1
1
41,608,287
41,844,840
41,763,591
42,086,662
RGD:1624291
G Tnrc6a trinucleotide repeat containing adaptor 6A JBrowse link 1 192,991,584 193,146,403 RGD:1624291
RGD:13792537
G Tnrc6b trinucleotide repeat containing adaptor 6B JBrowse link 7 121,930,610 122,147,934 RGD:13792537
G Tnrc6c trinucleotide repeat containing adaptor 6C JBrowse link 10 106,698,359 106,763,639 RGD:13792537
G Top1 DNA topoisomerase I JBrowse link 3 156,635,688 156,717,686 RGD:1600115
RGD:1624291
G Trim5 tripartite motif-containing 5 JBrowse link 1 169,446,774 169,463,760 RGD:1624291
G Trim71 tripartite motif containing 71 JBrowse link 8 122,553,015 122,604,787 RGD:1624291
RGD:1600115
G Wtip WT1 interacting protein JBrowse link 1 89,966,496 89,999,892 RGD:1624291
G Xrn1 5'-3' exoribonuclease 1 JBrowse link 8 103,774,125 103,883,563 RGD:1624291
RGD:12791034
G Ythdf2 YTH N(6)-methyladenosine RNA binding protein 2 JBrowse link 5 150,364,490 150,390,173 RGD:1624291
G Zc3h12a zinc finger CCCH type containing 12A JBrowse link 5 143,111,342 143,120,131 RGD:1600115
RGD:1624291
G Zc3h12d zinc finger CCCH type containing 12D JBrowse link 1 1,937,620 1,972,919 RGD:1624291
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1600115
RGD:1624291
G Zfp36l1 zinc finger protein 36, C3H type-like 1 JBrowse link 6 103,308,032 103,313,074 RGD:1624291
RGD:1600115
pi-body term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asz1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 JBrowse link 4 45,358,574 45,414,177 RGD:1624291
RGD:13792537
G Ddx4 DEAD-box helicase 4 JBrowse link 2 44,447,610 44,504,263 RGD:1600115
RGD:1624291
G Mov10l1 Mov10 like RISC complex RNA helicase 1 JBrowse link 7 129,973,391 130,039,306 RGD:1624291
G Piwil2 piwi-like RNA-mediated gene silencing 2 JBrowse link 15 52,037,693 52,116,277 RGD:1624291
G Tdrd1 tudor domain containing 1 JBrowse link 1 277,639,670 277,685,236 RGD:1624291
G Tdrd5 tudor domain containing 5 JBrowse link 13 73,872,637 73,922,640 RGD:1600115
RGD:1624291
G Tdrkh tudor and KH domain containing JBrowse link 2 195,649,813 195,674,217 RGD:1624291
piP-body term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddx4 DEAD-box helicase 4 JBrowse link 2 44,447,610 44,504,263 RGD:1624291
RGD:1600115
G Mael maelstrom spermatogenic transposon silencer JBrowse link 13 84,412,569 84,452,140 RGD:1624291
G Piwil4 piwi-like RNA-mediated gene silencing 4 JBrowse link 8 13,208,774 13,251,970 RGD:1600115
RGD:1624291
G Tdrd9 tudor domain containing 9 JBrowse link 6 136,536,636 136,650,481 RGD:1600115
RGD:1624291
G Tdrkh tudor and KH domain containing JBrowse link 2 195,649,813 195,674,217 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19951
    intracellular 13934
      cytoplasm 10687
        cytoplasmic ribonucleoprotein granule 230
          GW body 0
          P granule + 22
          P-body + 82
          RNP body 0
          TIS granule 0
          chromatoid body 16
          cytoplasmic stress granule 71
          mutator focus 0
          neuronal ribonucleoprotein granule 9
Path 2
Term Annotations click to browse term
  cellular_component 19951
    cellular anatomical entity 19598
      organelle 12670
        non-membrane-bounded organelle 4661
          intracellular non-membrane-bounded organelle 4642
            ribonucleoprotein granule 242
              cytoplasmic ribonucleoprotein granule 230
                GW body 0
                P granule + 22
                P-body + 82
                RNP body 0
                TIS granule 0
                chromatoid body 16
                cytoplasmic stress granule 71
                mutator focus 0
                neuronal ribonucleoprotein granule 9
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.