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ONTOLOGY REPORT - ANNOTATIONS


Term:synaptic vesicle recycling
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Accession:GO:0036465 term browser browse the term
Definition:The trafficking of synaptic vesicles from the pre-synaptic membrane so the vesicle can dock and prime for another round of exocytosis and neurotransmitter release. Recycling occurs after synaptic vesicle exocytosis, and is necessary to replenish presynaptic vesicle pools, sustain transmitter release and preserve the structural integrity of the presynaptic membrane. Recycling can occur following transient fusion with the presynaptic membrane (kiss and run), or via endocytosis of presynaptic membrane.
Synonyms:narrow_synonym: kiss-and-run synaptic vesicle recycling;   kiss-and-stay synaptic vesicle recycling


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synaptic vesicle recycling term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 ISO MGI:MGI:5620801 (MGI:MGI:5617942|PMID:20203623) RGD PMID:20203623 MGI:MGI:5617942 NCBI chr  X:32,329,883...32,376,301
Ensembl chr  X:32,329,598...32,355,307
JBrowse link
G Rab3a RAB3A, member RAS oncogene family IMP PMID:16141272 ParkinsonsUK-UCL PMID:16141272 RGD:8693376 NCBI chr16:20,435,098...20,439,206
Ensembl chr16:20,435,101...20,439,206
JBrowse link
G Rab5a RAB5A, member RAS oncogene family ISO (PMID:16141272) RGD PMID:16141272 NCBI chr 9:5,910...6,065 JBrowse link
G Syt7 synaptotagmin 7 ISO
ISS
(MGI:MGI:5560382|PMID:24569478)
GO_REF:0000024
RGD
UniProt
PMID:24569478 GO_REF:0000024, MGI:MGI:5560382 NCBI chr 1:226,435,816...226,498,008
Ensembl chr 1:226,435,979...226,493,377
JBrowse link
clathrin-dependent synaptic vesicle endocytosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btbd8 BTB domain containing 8 ISS
ISO
IEA
GO_REF:0000024
(MGI:MGI:6104538|PMID:29262337)
GO_REF:0000002
UniProt
RGD
InterPro
PMID:29262337 GO_REF:0000002, GO_REF:0000024, MGI:MGI:6104538 NCBI chr14:3,282,422...3,351,740
Ensembl chr14:3,284,089...3,300,200
JBrowse link
G Itsn1 intersectin 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:31,943,119...32,069,249
Ensembl chr11:31,893,489...32,069,249
JBrowse link
G Itsn2 intersectin 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:30,098,378...30,208,694
Ensembl chr 6:30,098,380...30,187,337
JBrowse link
negative regulation of synaptic vesicle endocytosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Syt11 synaptotagmin 11 IMP PMID:26589353 ParkinsonsUK-UCL PMID:26589353 RGD:11079192 NCBI chr 2:188,112,301...188,138,180
Ensembl chr 2:188,112,286...188,138,177
JBrowse link
negative regulation of synaptic vesicle recycling term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyfip1 cytoplasmic FMR1 interacting protein 1 IMP RGD PMID:26843638 RGD:11342679 NCBI chr 1:114,258,773...114,347,138
Ensembl chr 1:114,258,719...114,347,137
JBrowse link
G Stx1b syntaxin 1B ISO (MGI:MGI:5603022|PMID:24587181) RGD PMID:24587181 MGI:MGI:5603022 NCBI chr 1:199,251,842...199,270,465
Ensembl chr 1:199,251,844...199,270,627
JBrowse link
positive regulation of synaptic vesicle endocytosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap2m1 adaptor related protein complex 2 subunit mu 1 IMP RGD PMID:19762466 RGD:13461856 NCBI chr11:84,041,184...84,047,542
Ensembl chr11:84,041,184...84,047,546
JBrowse link
G Bcl2l1 Bcl2-like 1 IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 3:148,259,594...148,314,191
Ensembl chr 3:148,259,596...148,313,810
JBrowse link
G Dnm1 dynamin 1 IMP RGD PMID:17437541 RGD:8554440 NCBI chr 3:11,338,081...11,382,043
Ensembl chr 3:11,338,083...11,382,043
JBrowse link
G Dnm1l dynamin 1-like IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr11:88,830,968...88,882,271
Ensembl chr11:88,830,957...88,880,198
JBrowse link
G LOC102556337 mitochondrial fission factor-like IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 9:90,880,586...90,908,848
Ensembl chr 9:90,880,614...90,908,852
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 IMP RGD PMID:18445495 RGD:13462049 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584
JBrowse link
G Mff mitochondrial fission factor IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 9:88,490,280...88,518,517
Ensembl chr 9:88,493,593...88,517,827
JBrowse link
G Nlgn1 neuroligin 1 ISO
IMP
(MGI:MGI:4355770|PMID:19628693) RGD PMID:19628693, PMID:19628693 MGI:MGI:4355770, RGD:8554760 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IMP RGD PMID:21808019 RGD:13506237 NCBI chr 1:154,377,229...154,458,966
Ensembl chr 1:154,377,247...154,458,425
JBrowse link
G Ppp3cc protein phosphatase 3 catalytic subunit gamma IMP RGD PMID:26627835 RGD:11532172 NCBI chr15:51,896,427...51,968,075
Ensembl chr15:51,896,615...51,967,897
JBrowse link
G Sh3gl1 SH3 domain containing GRB2 like 1, endophilin A2 IMP RGD PMID:14532001 RGD:13464359 NCBI chr 9:11,031,847...11,055,285
Ensembl chr 9:11,031,841...11,055,285
JBrowse link
G Snap91 synaptosome associated protein 91 IMP RGD PMID:21808019 RGD:13506237 NCBI chr 8:94,447,558...94,564,772
Ensembl chr 8:94,447,550...94,564,525
JBrowse link
G Tor1a torsin family 1, member A ISO
ISS
(PMID:21102408)
GO_REF:0000024
RGD
UniProt
PMID:21102408 GO_REF:0000024 NCBI chr 3:9,800,322...9,807,318
Ensembl chr 3:9,800,322...9,807,328
JBrowse link
positive regulation of synaptic vesicle recycling term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnm1 dynamin 1 IMP RGD PMID:17880892 RGD:8553820 NCBI chr 3:11,338,081...11,382,043
Ensembl chr 3:11,338,083...11,382,043
JBrowse link
G Dnm3 dynamin 3 IMP RGD PMID:23687302 RGD:13462065 NCBI chr13:79,906,711...80,379,967
Ensembl chr13:79,910,382...80,379,929
JBrowse link
G Plaa phospholipase A2, activating protein ISO
ISS
(MGI:MGI:5883825|PMID:28413018)
GO_REF:0000024
RGD
UniProt
PMID:28413018 GO_REF:0000024, MGI:MGI:5883825 NCBI chr 5:113,548,913...113,578,928
Ensembl chr 5:113,548,913...113,578,928
JBrowse link
regulation of recycling endosome localization within postsynapse term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gripap1 GRIP1 associated protein 1 IDA
IBA
IMP
PMID:20098723
PMID:21873635
SynGO
GO_Central
PMID:20098723, PMID:21873635, PMID:20098723 RGD:12050105, RGD:13792537, RGD:12050105 NCBI chr  X:15,523,929...15,553,702
Ensembl chr  X:15,523,929...15,553,720
JBrowse link
regulation of synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc2a4 solute carrier family 2 member 4 IDA
IMP
PMID:28111082 SynGO PMID:28111082, PMID:28111082 RGD:13702195, RGD:13702195 NCBI chr10:56,552,921...56,558,562
Ensembl chr10:56,552,983...56,558,487
JBrowse link
regulation of synaptic vesicle endocytosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btbd9 BTB domain containing 9 ISO MGI:MGI:4127237 (MGI:MGI:5438074|PMID:22536397) RGD PMID:22536397 MGI:MGI:5438074 NCBI chr20:8,899,286...9,253,936
Ensembl chr20:8,901,931...9,249,820
JBrowse link
G Calm1 calmodulin 1 IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 6:124,217,241...124,225,292
Ensembl chr 6:124,217,241...124,225,292
JBrowse link
G Calm2 calmodulin 2 IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 6:11,067,675...11,080,078
Ensembl chr15:65,506,874...65,507,968
JBrowse link
G Calm3 calmodulin 3 IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 1:78,844,520...78,851,628
Ensembl chr 1:78,843,080...78,851,719
JBrowse link
G Dgkq diacylglycerol kinase, theta ISO (MGI:MGI:5807028|PMID:26748701) RGD PMID:26748701 MGI:MGI:5807028 NCBI chr14:2,069,409...2,083,370
Ensembl chr14:2,069,409...2,083,370
JBrowse link
G Dnm1 dynamin 1 IMP RGD PMID:16648848 RGD:13504740 NCBI chr 3:11,338,081...11,382,043
Ensembl chr 3:11,338,083...11,382,043
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 ISO (MGI:MGI:6189511|PMID:25501810) RGD PMID:25501810 MGI:MGI:6189511 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IMP RGD PMID:18842885 RGD:8554167 NCBI chr 1:154,377,229...154,458,966
Ensembl chr 1:154,377,247...154,458,425
JBrowse link
G Pip5k1c phosphatidylinositol-4-phosphate 5-kinase type 1 gamma ISO (MGI:MGI:3054280|PMID:15386003) RGD PMID:15386003 MGI:MGI:3054280 NCBI chr 7:11,267,207...11,294,291
Ensembl chr 7:11,267,218...11,294,249
JBrowse link
G Ppp3cb protein phosphatase 3 catalytic subunit beta IEA
ISO
GO_REF:0000107
(MGI:MGI:4830393|PMID:20810903)
Ensembl
RGD
PMID:20810903 GO_REF:0000107, MGI:MGI:4830393 NCBI chr15:4,209,702...4,236,895
Ensembl chr15:4,209,703...4,236,895
JBrowse link
G Ppp3cc protein phosphatase 3 catalytic subunit gamma IDA
IMP
PMID:26627835 SynGO PMID:26627835, PMID:26627835 RGD:11532172, RGD:11532172 NCBI chr15:51,896,427...51,968,075
Ensembl chr15:51,896,615...51,967,897
JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 ISO
IEA
UniProtKB:O60890 (PMID:27160703)
GO_REF:0000107
RGD
Ensembl
PMID:27160703 GO_REF:0000107 NCBI chr18:1,273,490...1,390,790
Ensembl chr18:1,273,453...1,390,190
JBrowse link
G Scamp5 secretory carrier membrane protein 5 IDA
IMP
PMID:25057210 SynGO PMID:25057210, PMID:25057210 RGD:13702419, RGD:13702419 NCBI chr 8:62,221,820...62,266,269
Ensembl chr 8:62,220,892...62,248,017
JBrowse link
G Sh3gl1 SH3 domain containing GRB2 like 1, endophilin A2 IMP RGD PMID:22750032 RGD:13463484 NCBI chr 9:11,031,847...11,055,285
Ensembl chr 9:11,031,841...11,055,285
JBrowse link
G Slc17a7 solute carrier family 17 member 7 IMP RGD PMID:16815333 RGD:13504741 NCBI chr 1:101,161,265...101,172,292
Ensembl chr 1:101,161,252...101,173,174
JBrowse link
G Snap91 synaptosome associated protein 91 IMP RGD PMID:18842885 RGD:8554167 NCBI chr 8:94,447,558...94,564,772
Ensembl chr 8:94,447,550...94,564,525
JBrowse link
G Syt7 synaptotagmin 7 ISO (MGI:MGI:6189675|PMID:14532108) RGD PMID:14532108 MGI:MGI:6189675 NCBI chr 1:226,435,816...226,498,008
Ensembl chr 1:226,435,979...226,493,377
JBrowse link
G Vamp4 vesicle-associated membrane protein 4 EXP
IMP
IDA
PMID:26607000 SynGO PMID:26607000, PMID:26607000, PMID:26607000 RGD:11058152, RGD:11058152, RGD:11058152 NCBI chr13:80,460,699...80,483,597
Ensembl chr13:80,460,694...80,483,600
JBrowse link
regulation of synaptic vesicle recycling term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf14 fibroblast growth factor 14 IMP PMID:23831029 MGI PMID:23831029 RGD:10047342 NCBI chr15:110,382,274...111,077,027
Ensembl chr15:110,385,217...110,612,681
JBrowse link
G Vamp2 vesicle-associated membrane protein 2 IMP RGD PMID:21808019 RGD:13506237 NCBI chr10:55,675,171...55,679,405
Ensembl chr10:55,675,575...55,679,450
JBrowse link
synaptic vesicle budding from endosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 ISO (MGI:MGI:5617942|PMID:20203623) RGD PMID:20203623 MGI:MGI:5617942 NCBI chr  X:32,329,883...32,376,301
Ensembl chr  X:32,329,598...32,355,307
JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 ISO (MGI:MGI:6189637|PMID:11588176) RGD PMID:11588176 MGI:MGI:6189637 NCBI chr 2:24,022,815...24,227,522
Ensembl chr 2:24,024,791...24,226,224
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 IDA
IMP
IBA
ISO
PMID:22539861
PMID:21873635
(MGI:MGI:6189637|PMID:11588176)
RGD PMID:11588176, PMID:22539861, PMID:22539861, PMID:21873635 MGI:MGI:6189637, RGD:12050120, RGD:12050120, RGD:13792537 NCBI chr 7:11,838,639...11,873,992
Ensembl chr 7:11,838,639...11,873,984
JBrowse link
G Btbd8 BTB domain containing 8 ISO (MGI:MGI:6104538|PMID:29262337) RGD PMID:29262337 MGI:MGI:6104538 NCBI chr14:3,282,422...3,351,740
Ensembl chr14:3,284,089...3,300,200
JBrowse link
synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnm1 dynamin 1 ISO
IBA
UniProtKB:Q8BZ98 (MGI:MGI:5285027|PMID:21689597)
PMID:21873635
RGD PMID:21689597, PMID:21873635 MGI:MGI:5285027, RGD:13792537 NCBI chr 3:11,338,081...11,382,043
Ensembl chr 3:11,338,083...11,382,043
JBrowse link
G Dnm2 dynamin 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:22,458,869...22,540,649
Ensembl chr 8:22,458,899...22,540,524
JBrowse link
G Dnm3 dynamin 3 ISO
IBA
UniProtKB:P39053 (MGI:MGI:5285027|PMID:21689597)
PMID:21873635
RGD PMID:21689597, PMID:21873635 MGI:MGI:5285027, RGD:13792537 NCBI chr13:79,906,711...80,379,967
Ensembl chr13:79,910,382...80,379,929
JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 IC PMID:21832070 SynGO PMID:21832070 RGD:9685531 NCBI chr 5:128,923,809...129,022,268
Ensembl chr 5:128,923,934...129,022,054
JBrowse link
G Mx1 myxovirus (influenza virus) resistance 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:37,891,150...37,916,775
Ensembl chr11:37,891,156...37,914,983
JBrowse link
G Mx2 MX dynamin like GTPase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:38,035,306...38,066,185
Ensembl chr11:38,035,450...38,059,950
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:154,377,229...154,458,966
Ensembl chr 1:154,377,247...154,458,425
JBrowse link
G Snap91 synaptosome associated protein 91 ISO
IBA
(MGI:MGI:5707086|PMID:26412491)
PMID:21873635
RGD PMID:26412491, PMID:21873635 MGI:MGI:5707086, RGD:13792537 NCBI chr 8:94,447,558...94,564,772
Ensembl chr 8:94,447,550...94,564,525
JBrowse link
synaptic vesicle coating term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cltb clathrin, light chain B NAS PMID:3563513 UniProt PMID:3563513 RGD:70686 NCBI chr17:10,537,348...10,554,999
Ensembl chr17:10,537,365...10,554,989
JBrowse link
synaptic vesicle endocytosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin, beta ISO (MGI:MGI:6189485|PMID:27840001) RGD PMID:27840001 MGI:MGI:6189485 NCBI chr12:13,715,843...13,718,813
Ensembl chr12:13,715,843...13,718,841
JBrowse link
G Actg1 actin, gamma 1 ISO (MGI:MGI:6189485|PMID:27840001) RGD PMID:27840001 MGI:MGI:6189485 NCBI chr10:109,518,429...109,521,288
Ensembl chr 3:75,643,054...75,644,954
Ensembl chr10:75,643,054...75,644,954
JBrowse link
G Amph amphiphysin ISO
IBA
MGI:MGI:2388118 (MGI:MGI:2176305|PMID:11879655)
PMID:21873635
RGD PMID:11879655, PMID:21873635 MGI:MGI:2176305, RGD:13792537 NCBI chr17:48,304,324...48,562,838
Ensembl chr17:48,304,322...48,562,905
JBrowse link
G Ap2b1 adaptor related protein complex 2 subunit beta 1 ISO (PMID:11102472) RGD PMID:11102472 NCBI chr10:70,516,462...70,621,973
Ensembl chr10:70,520,206...70,621,977
JBrowse link
G Ap2m1 adaptor related protein complex 2 subunit mu 1 IDA
IMP
PMID:19321783 SynGO PMID:19321783, PMID:19321783 RGD:12050109, RGD:12050109 NCBI chr11:84,041,184...84,047,542
Ensembl chr11:84,041,184...84,047,546
JBrowse link
G Arf6 ADP-ribosylation factor 6 IDA
IMP
PMID:26731518 SynGO PMID:26731518, PMID:26731518 RGD:11556875, RGD:11556875 NCBI chr 6:91,697,109...91,698,257
Ensembl chr 6:91,697,109...91,698,255
JBrowse link
G Bin1 bridging integrator 1 IDA
IMP
PMID:9348539 SynGO PMID:9348539, PMID:9348539 RGD:631926, RGD:631926 NCBI chr18:25,163,575...25,222,139
Ensembl chr18:25,163,561...25,222,135
JBrowse link
G Btbd8 BTB domain containing 8 ISO (MGI:MGI:6104538|PMID:29262337) RGD PMID:29262337 MGI:MGI:6104538 NCBI chr14:3,282,422...3,351,740
Ensembl chr14:3,284,089...3,300,200
JBrowse link
G Canx calnexin ISS
ISO
GO_REF:0000024
(MGI:MGI:5288282|PMID:21747946)
UniProt
RGD
PMID:21747946 GO_REF:0000024, MGI:MGI:5288282 NCBI chr10:35,800,942...35,833,939
Ensembl chr10:35,800,942...35,833,861
JBrowse link
G Cd24 CD24 molecule ISO MGI:MGI:2179996 (MGI:MGI:3625625|PMID:16606832) RGD PMID:16606832 MGI:MGI:3625625 NCBI chr20:48,335,540...48,340,847
Ensembl chr20:48,335,540...48,340,846
JBrowse link
G Cdk5 cyclin-dependent kinase 5 IMP RGD PMID:12855954 RGD:1358501 NCBI chr 4:7,282,945...7,287,427
Ensembl chr 4:7,282,948...7,288,383
JBrowse link
G Cel carboxyl ester lipase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:7,134,021...7,141,522
Ensembl chr 3:7,134,021...7,141,522
JBrowse link
G Cltc clathrin heavy chain IDA
IMP
PMID:16982422 SynGO PMID:16982422, PMID:16982422 RGD:13702168, RGD:13702168 NCBI chr10:74,014,560...74,070,578
Ensembl chr10:74,014,562...74,070,266
JBrowse link
G Dennd1a DENN domain containing 1A ISO (MGI:MGI:3694831|PMID:17182770) RGD PMID:17182770 MGI:MGI:3694831 NCBI chr 3:22,061,120...22,501,502
Ensembl chr 3:22,058,400...22,500,765
JBrowse link
G Dnm1 dynamin 1 ISO (MGI:MGI:3709249|PMID:17463283) RGD PMID:17463283 MGI:MGI:3709249 NCBI chr 3:11,338,081...11,382,043
Ensembl chr 3:11,338,083...11,382,043
JBrowse link
G Dnm1l dynamin 1-like IDA
IMP
PMID:23792689 SynGO PMID:23792689, PMID:23792689 RGD:12793033, RGD:12793033 NCBI chr11:88,830,968...88,882,271
Ensembl chr11:88,830,957...88,880,198
JBrowse link
G Dnm2 dynamin 2 ISO (MGI:MGI:5285027|PMID:21689597) RGD PMID:21689597 MGI:MGI:5285027 NCBI chr 8:22,458,869...22,540,649
Ensembl chr 8:22,458,899...22,540,524
JBrowse link
G Dnm3 dynamin 3 ISO (MGI:MGI:5285027|PMID:21689597) RGD PMID:21689597 MGI:MGI:5285027 NCBI chr13:79,906,711...80,379,967
Ensembl chr13:79,910,382...80,379,929
JBrowse link
G Fcho2 FCH and mu domain containing endocytic adaptor 2 ISO
IBA
IGI
UniProtKB:D3ZIM5|UniProtKB:D3ZYR1 (MGI:MGI:5320276|PMID:20448150)
PMID:21873635
RGD PMID:20448150, PMID:21873635, PMID:20448150 MGI:MGI:5320276, RGD:13792537, RGD:12050101 NCBI chr 2:28,927,918...29,029,271
Ensembl chr 2:28,926,107...29,029,176
JBrowse link
G Grn granulin precursor IMP RGD PMID:21813674 RGD:5509044 NCBI chr10:90,377,103...90,383,207
Ensembl chr10:90,376,933...90,383,205
JBrowse link
G Itsn1 intersectin 1 ISO (MGI:MGI:3811659|PMID:18676989) RGD PMID:18676989 MGI:MGI:3811659 NCBI chr11:31,943,119...32,069,249
Ensembl chr11:31,893,489...32,069,249
JBrowse link
G LOC100910792 amphiphysin-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:47,716,143...47,817,243
Ensembl chr17:47,721,977...47,817,248
JBrowse link
G Nlgn1 neuroligin 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Nlgn2 neuroligin 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:56,431,586...56,444,847
Ensembl chr10:56,431,573...56,444,847
JBrowse link
G Nlgn3 neuroligin 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:71,199,390...71,227,460
Ensembl chr  X:71,199,491...71,222,732
JBrowse link
G Ophn1 oligophrenin 1 ISO
IBA
MGI:MGI:700009 (MGI:MGI:4359148|PMID:19481455)
PMID:21873635
RGD PMID:19481455, PMID:21873635 MGI:MGI:4359148, RGD:13792537 NCBI chr  X:68,185,865...68,579,518
Ensembl chr  X:68,189,161...68,563,137
JBrowse link
G Pacsin1 protein kinase C and casein kinase substrate in neurons 1 ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:MGI:5304995|PMID:21926968)
UniProt
Ensembl
RGD
PMID:21926968 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5304995 NCBI chr20:7,241,248...7,286,702
Ensembl chr20:7,279,820...7,286,586
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IDA
IBA
IMP
PMID:21808019
PMID:21873635
SynGO
GO_Central
PMID:21808019, PMID:21873635, PMID:21808019 RGD:13506237, RGD:13792537, RGD:13506237 NCBI chr 1:154,377,229...154,458,966
Ensembl chr 1:154,377,247...154,458,425
JBrowse link
G Rab27b RAB27B, member RAS oncogene family IDA
IMP
PMID:20926670 SynGO PMID:20926670, PMID:20926670 RGD:13432355, RGD:13432355 NCBI chr18:68,486,006...68,644,595
Ensembl chr18:68,488,942...68,551,558
JBrowse link
G RGD1307100 similar to RIKEN cDNA D630029K19 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:123,555,742...123,766,675
Ensembl chr 2:123,555,673...123,766,676
JBrowse link
G Scrib scribble planar cell polarity protein ISO (MGI:MGI:4365512|PMID:19458197) RGD PMID:19458197 MGI:MGI:4365512 NCBI chr 7:117,105,810...117,128,802
Ensembl chr 7:117,105,810...117,128,798
JBrowse link
G Sh3gl2 SH3 domain containing GRB2 like 2, endophilin A1 ISO
IMP
IDA
MGI:MGI:2151070 (MGI:MGI:4359148|PMID:19481455)
PMID:22099461
RGD PMID:19481455, PMID:22099461, PMID:22099461 MGI:MGI:4359148, RGD:13702445, RGD:13702445 NCBI chr 5:103,479,767...103,654,507
Ensembl chr 5:103,479,767...103,654,247
JBrowse link
G Snap91 synaptosome associated protein 91 IDA
IBA
IMP
PMID:21808019
PMID:21873635
SynGO
GO_Central
PMID:21808019, PMID:21873635, PMID:21808019 RGD:13506237, RGD:13792537, RGD:13506237 NCBI chr 8:94,447,558...94,564,772
Ensembl chr 8:94,447,550...94,564,525
JBrowse link
G Snca synuclein alpha IBA
ISO
PMID:21873635
(MGI:MGI:3850310|PMID:18980610), (MGI:MGI:5605098|PMID:25009269)
RGD PMID:18980610, PMID:25009269, PMID:21873635 MGI:MGI:3850310, MGI:MGI:5605098, RGD:13792537 NCBI chr 4:90,782,412...90,883,236
Ensembl chr 4:90,782,374...90,882,285
JBrowse link
G Sncb synuclein, beta IBA
ISO
PMID:21873635
(MGI:MGI:5605098|PMID:25009269)
RGD PMID:25009269, PMID:21873635 MGI:MGI:5605098, RGD:13792537 NCBI chr17:10,384,472...10,392,776
Ensembl chr17:10,384,511...10,392,843
JBrowse link
G Sncg synuclein, gamma IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:10,722,110...10,726,648
Ensembl chr16:10,722,106...10,726,707
JBrowse link
G Ston1 stonin 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:12,332,465...12,379,783
Ensembl chr 6:12,362,813...12,379,783
JBrowse link
G Ston2 stonin 2 IMP
IBA
IDA
ISS
ISO
PMID:22727701
PMID:21873635
GO_REF:0000024
UniProtKB:O14656 (PMID:21102408)
UniProt
RGD
PMID:21102408, PMID:22727701, PMID:21873635, PMID:22727701 GO_REF:0000024, RGD:12050122, RGD:13792537, RGD:12050122 NCBI chr 6:115,398,586...115,547,552
Ensembl chr 6:115,399,326...115,513,354
JBrowse link
G Stx1a syntaxin 1A ISO (PMID:26635000) RGD PMID:26635000 NCBI chr12:24,682,050...24,710,002
Ensembl chr12:24,682,041...24,710,019
JBrowse link
G Synj1 synaptojanin 1 ISO
IBA
ISS
IEA
MGI:MGI:2179801 (MGI:MGI:3797309|PMID:18093523)
PMID:21873635
GO_REF:0000024
GO_REF:0000002
UniProtKB:Q8CHC4 (PMID:18093523)
RGD
ParkinsonsUK-UCL
InterPro
PMID:18093523, PMID:21873635 GO_REF:0000002, GO_REF:0000024, MGI:MGI:3797309, RGD:13792537 NCBI chr11:31,105,784...31,181,573
Ensembl chr11:31,104,787...31,180,642
JBrowse link
G Synj2 synaptojanin 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:46,835,922...46,932,544
Ensembl chr 1:46,835,971...46,932,529
JBrowse link
G Syp synaptophysin IEA
ISO
GO_REF:0000107
(MGI:MGI:5141572|PMID:21658579)
Ensembl
RGD
PMID:21658579 GO_REF:0000107, MGI:MGI:5141572 NCBI chr  X:15,694,699...15,709,244
Ensembl chr  X:15,695,566...15,707,436
JBrowse link
G Syt1 synaptotagmin 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:50,084,063...50,638,996
Ensembl chr 7:50,084,060...50,638,798
JBrowse link
G Syt2 synaptotagmin 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:51,569,248...51,577,824
Ensembl chr13:51,534,025...51,578,052
JBrowse link
G Syt5 synaptotagmin 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:72,859,806...72,867,934
Ensembl chr 1:72,860,218...72,867,930
JBrowse link
G Syt8 synaptotagmin 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:215,605,408...215,607,602
Ensembl chr 1:215,605,404...215,607,696
JBrowse link
G Tbc1d24 TBC1 domain family, member 24 ISO MGI:MGI:5692831 (MGI:MGI:6279048|PMID:30335140) RGD PMID:30335140 MGI:MGI:6279048 NCBI chr10:13,551,100...13,576,739
Ensembl chr10:13,551,100...13,558,384
JBrowse link
G Vamp2 vesicle-associated membrane protein 2 ISS
ISO
GO_REF:0000024
(MGI:MGI:3573806|PMID:15475946)
UniProt
RGD
PMID:15475946 GO_REF:0000024, MGI:MGI:3573806 NCBI chr10:55,675,171...55,679,405
Ensembl chr10:55,675,575...55,679,450
JBrowse link
synaptic vesicle recycling via endosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2l1 Bcl2-like 1 IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 3:148,259,594...148,314,191
Ensembl chr 3:148,259,596...148,313,810
JBrowse link
G Btbd8 BTB domain containing 8 ISS
ISO
GO_REF:0000024
(MGI:MGI:6104538|PMID:29262337)
UniProt
RGD
PMID:29262337 GO_REF:0000024, MGI:MGI:6104538 NCBI chr14:3,282,422...3,351,740
Ensembl chr14:3,284,089...3,300,200
JBrowse link
G Dnm1l dynamin 1-like IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr11:88,830,968...88,882,271
Ensembl chr11:88,830,957...88,880,198
JBrowse link
synaptic vesicle uncoating term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 IBA
ISO
PMID:21873635
(MGI:MGI:4439191|PMID:20160091)
RGD PMID:20160091, PMID:21873635 MGI:MGI:4439191, RGD:13792537 NCBI chr 5:120,330,372...120,492,515
Ensembl chr 5:120,340,646...120,492,487
JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IC PMID:9878698 SynGO PMID:9878698 RGD:10059325 NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179
JBrowse link
G Sh3gl1 SH3 domain containing GRB2 like 1, endophilin A2 ISO UniProtKB:Q62420|UniProtKB:Q62421 (MGI:MGI:5300660|PMID:22099461) RGD PMID:22099461 MGI:MGI:5300660 NCBI chr 9:11,031,847...11,055,285
Ensembl chr 9:11,031,841...11,055,285
JBrowse link
G Sh3gl2 SH3 domain containing GRB2 like 2, endophilin A1 ISO UniProtKB:Q62419|UniProtKB:Q62421 (MGI:MGI:5300660|PMID:22099461) RGD PMID:22099461 MGI:MGI:5300660 NCBI chr 5:103,479,767...103,654,507
Ensembl chr 5:103,479,767...103,654,247
JBrowse link
G Sh3gl3 SH3 domain containing GRB2 like 3, endophilin A3 ISO UniProtKB:Q62419|UniProtKB:Q62420 (MGI:MGI:5300660|PMID:22099461) RGD PMID:22099461 MGI:MGI:5300660 NCBI chr 1:144,069,641...144,200,402
Ensembl chr 1:144,069,638...144,200,397
JBrowse link
G Synj1 synaptojanin 1 ISO MGI:MGI:2179801 (MGI:MGI:1346710|PMID:10535736), (MGI:MGI:2447947|PMID:12481038), (MGI:MGI:5300660|PMID:22099461) RGD PMID:10535736, PMID:12481038, PMID:22099461 MGI:MGI:1346710, MGI:MGI:2447947, MGI:MGI:5300660 NCBI chr11:31,105,784...31,181,573
Ensembl chr11:31,104,787...31,180,642
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    cellular process 18798
      cellular localization 2966
        establishment of localization in cell 2177
          synaptic vesicle recycling 87
            negative regulation of synaptic vesicle recycling + 3
            positive regulation of synaptic vesicle recycling + 15
            regulation of synaptic vesicle recycling + 33
            synaptic vesicle endocytosis + 77
            synaptic vesicle recycling via endosome + 9
Path 2
Term Annotations click to browse term
  biological_process 20027
    localization 6496
      establishment of localization 4911
        transport 4759
          vesicle-mediated transport 1673
            vesicle-mediated transport in synapse 280
              synaptic vesicle cycle 252
                synaptic vesicle recycling 87
                  negative regulation of synaptic vesicle recycling + 3
                  positive regulation of synaptic vesicle recycling + 15
                  regulation of synaptic vesicle recycling + 33
                  synaptic vesicle endocytosis + 77
                  synaptic vesicle recycling via endosome + 9
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.