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ONTOLOGY REPORT - ANNOTATIONS


Term:bile acid signaling pathway
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Accession:GO:0038183 term browser browse the term
Definition:A series of molecular signals initiated by the binding of a bile acid to a receptor, and ending with regulation of a downstream cellular process, e.g. transcription.


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bile acid signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb11 ATP binding cassette subfamily B member 11 IEP RGD PMID:27090119 RGD:15090804 NCBI chr 3:55,480,024...55,587,946
Ensembl chr 3:55,480,024...55,587,946
JBrowse link
G Abcc2 ATP binding cassette subfamily C member 2 IEP RGD PMID:27090119 RGD:15090804 NCBI chr 1:263,554,426...263,612,556
Ensembl chr 1:263,554,453...263,613,252
JBrowse link
G Abcc4 ATP binding cassette subfamily C member 4 IEP RGD PMID:30223280 RGD:15045612 NCBI chr15:103,695,415...103,927,980
Ensembl chr15:103,696,557...103,927,592
JBrowse link
G Abcg5 ATP binding cassette subfamily G member 5 IEP RGD PMID:25263431 RGD:15045610 NCBI chr 6:7,935,771...7,961,207
Ensembl chr 6:7,935,771...7,961,207
JBrowse link
G Abcg8 ATP binding cassette subfamily G member 8 IEP RGD PMID:25263431 RGD:15045610 NCBI chr 6:7,961,413...7,980,708
Ensembl chr 6:7,961,413...7,980,708
JBrowse link
G Acat2 acetyl-CoA acetyltransferase 2 IEP RGD PMID:25263431 RGD:15045610 NCBI chr 1:47,972,399...47,992,654
Ensembl chr 1:47,972,399...47,992,653
JBrowse link
G Aldh1l1 aldehyde dehydrogenase 1 family, member L1 IEP RGD PMID:30223280 RGD:15045612 NCBI chr 4:123,516,553...123,564,067
Ensembl chr 4:123,516,788...123,557,501
JBrowse link
G Cideb cell death-inducing DFFA-like effector b IEP RGD PMID:25263431 RGD:15045610 NCBI chr15:34,439,844...34,444,244
Ensembl chr15:34,439,876...34,444,244
JBrowse link
G Cyp7a1 cytochrome P450 family 7 subfamily A member 1 IEP RGD PMID:30223280 RGD:15045612 NCBI chr 5:19,358,734...19,368,431
Ensembl chr 5:19,358,734...19,368,431
JBrowse link
G Cyp8b1 cytochrome P450 family 8 subfamily B member 1 IEP RGD PMID:25263431 RGD:15045610 NCBI chr 8:130,548,418...130,550,388
Ensembl chr 8:130,548,418...130,550,388
JBrowse link
G Dgat2 diacylglycerol O-acyltransferase 2 IEP RGD PMID:25263431 RGD:15045610 NCBI chr 1:164,113,459...164,143,818
Ensembl chr 1:164,113,459...164,143,818
JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase IEP RGD PMID:25263431 RGD:15045610 NCBI chr 2:27,480,224...27,500,654
Ensembl chr 2:27,480,226...27,500,654
JBrowse link
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 IEP RGD PMID:25263431 RGD:15045610 NCBI chr 3:80,004,130...80,014,197
Ensembl chr 3:80,004,130...80,012,750
JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 ISO
IBA
IEP
IMP
IDA
(MGI:MGI:5306122|PMID:21757002)
PMID:21873635
RGD PMID:21757002, PMID:21873635, PMID:27090119, PMID:30061734, PMID:25263431, PMID:30223280, PMID:19136377, PMID:29235094, PMID:29138817, PMID:30068870 MGI:MGI:5306122, RGD:13792537, RGD:15090804, RGD:15092071, RGD:15045610, RGD:15045612, RGD:15042882, RGD:15042872, RGD:15042871, RGD:15042870 NCBI chr 7:30,003,429...30,162,095
Ensembl chr 7:30,003,429...30,162,056
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 IEP RGD PMID:27090119 RGD:15090804 NCBI chr 2:54,857,688...54,893,404
Ensembl chr 2:54,857,688...54,893,404
JBrowse link
G Slc10a1 solute carrier family 10 member 1 IEP RGD PMID:27090119 RGD:15090804 NCBI chr 6:104,617,730...104,631,355
Ensembl chr 6:104,617,730...104,631,355
JBrowse link
G Slco1a4 solute carrier organic anion transporter family, member 1a4 IEP RGD PMID:27090119 RGD:15090804 NCBI chr 4:175,969,549...176,026,227
Ensembl chr 4:175,969,549...176,026,163
JBrowse link
G Vdr vitamin D receptor IEA
ISO
GO_REF:0000107
(PMID:12016314)
Ensembl
RGD
PMID:12016314 GO_REF:0000107 NCBI chr 7:139,344,452...139,394,138
Ensembl chr 7:139,342,063...139,394,166
JBrowse link
cell surface bile acid receptor signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpbar1 G protein-coupled bile acid receptor 1 ISO (PMID:12419312), (PMID:12524422) RGD PMID:12419312, PMID:12524422 NCBI chr 9:81,555,914...81,560,931
Ensembl chr 9:81,559,605...81,560,594
JBrowse link
intracellular bile acid receptor signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 IEA
ISO
IDA
GO_REF:0000107
(PMID:10334992)
Ensembl
RGD
PMID:10334992, PMID:10334992 GO_REF:0000107, RGD:15090836 NCBI chr 7:30,003,429...30,162,095
Ensembl chr 7:30,003,429...30,162,056
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    signaling 7588
      signal transduction 7015
        bile acid signaling pathway 19
          cell surface bile acid receptor signaling pathway 1
          intracellular bile acid receptor signaling pathway 1
Path 2
Term Annotations click to browse term
  biological_process 20014
    biological regulation 13759
      regulation of biological process 13071
        regulation of cellular process 12560
          signal transduction 7015
            bile acid signaling pathway 19
              cell surface bile acid receptor signaling pathway 1
              intracellular bile acid receptor signaling pathway 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.