Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway
go back to main search page
Accession:GO:0039531 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of the series of molecular signals generated as a consequence of a virus or viral RNA binding to a pattern recognition receptor (PRR) located in the cytoplasm.
Synonyms:exact_synonym: regulation of viral-induced cytoplasmic pattern recognition receptor signalling pathway
 related_synonym: regulation of MAV signaling


show annotations for term's descendants           Sort by:
 
negative regulation of MDA-5 signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1qbp complement C1q binding protein ISO
ISS
(PMID:19164550)
GO_REF:0000024
RGD
UniProt
PMID:19164550 GO_REF:0000024 NCBI chr10:57,613,876...57,618,527
Ensembl chr10:57,613,879...57,618,527
JBrowse link
G Dhx58 DEXH-box helicase 58 ISO (PMID:21187438) RGD PMID:21187438 NCBI chr10:88,599,722...88,611,562
Ensembl chr10:88,599,680...88,611,105
JBrowse link
G Riok3 RIO kinase 3 ISO (PMID:25865883) RGD PMID:25865883 NCBI chr18:3,565,166...3,590,739
Ensembl chr18:3,565,166...3,590,739
JBrowse link
G Tkfc triokinase and FMN cyclase ISO
ISS
(PMID:17600090)
GO_REF:0000024
RGD
UniProt
PMID:17600090 GO_REF:0000024 NCBI chr 1:226,642,901...226,657,698
Ensembl chr 1:226,644,200...226,657,408
JBrowse link
negative regulation of RIG-I signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1qbp complement C1q binding protein ISO
ISS
(PMID:19164550)
GO_REF:0000024
RGD
UniProt
PMID:19164550 GO_REF:0000024 NCBI chr10:57,613,876...57,618,527
Ensembl chr10:57,613,879...57,618,527
JBrowse link
G Dhx58 DEXH-box helicase 58 ISO (MGI:MGI:3836702|PMID:17475874)
(PMID:18411269), (PMID:21187438)
RGD PMID:17475874, PMID:18411269, PMID:21187438 MGI:MGI:3836702 NCBI chr10:88,599,722...88,611,562
Ensembl chr10:88,599,680...88,611,105
JBrowse link
G Gpatch3 G patch domain containing 3 ISO
IBA
(PMID:28414768)
PMID:21873635
RGD PMID:28414768, PMID:21873635 RGD:13792537 NCBI chr 5:151,796,456...151,806,007
Ensembl chr 5:151,796,814...151,805,976
JBrowse link
G Nlrx1 NLR family member X1 ISO
IEA
MGI:MGI:5141085 (MGI:MGI:5050761|PMID:21703540)
GO_REF:0000107
RGD
Ensembl
PMID:21703540 GO_REF:0000107, MGI:MGI:5050761 NCBI chr 8:48,583,559...48,600,203
Ensembl chr 8:48,584,071...48,597,867
JBrowse link
G Nploc4 NPL4 homolog, ubiquitin recognition factor IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:26471729)
Ensembl
UniProt
RGD
PMID:26471729 GO_REF:0000024, GO_REF:0000107 NCBI chr10:109,553,518...109,610,087
Ensembl chr10:109,552,649...109,610,030
JBrowse link
G Rnf125 ring finger protein 125 ISO (PMID:17460044), (PMID:26471729) RGD PMID:17460044, PMID:26471729 NCBI chr18:15,193,226...15,225,454
Ensembl chr18:15,192,962...15,225,427
JBrowse link
G Sec14l1 SEC14-like lipid binding 1 ISO (PMID:23843640) RGD PMID:23843640 NCBI chr10:106,065,712...106,112,859
Ensembl chr10:106,065,712...106,112,857
JBrowse link
G Ufd1 ubiquitin recognition factor in ER associated degradation 1 ISO
ISS
(PMID:26471729)
GO_REF:0000024
RGD
UniProt
PMID:26471729 GO_REF:0000024 NCBI chr11:86,304,836...86,328,478
Ensembl chr11:86,304,815...86,328,469
JBrowse link
negative regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tspan6 tetraspanin 6 ISO (PMID:22908223) RGD PMID:22908223 NCBI chr  X:104,719,930...104,729,606
Ensembl chr  X:104,719,940...104,726,816
JBrowse link
positive regulation of MDA-5 signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07025140.1 IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr16:29,834,086...29,936,307 JBrowse link
G Ankrd17 ankyrin repeat domain 17 ISO (PMID:22328336) RGD PMID:22328336 NCBI chr14:19,291,025...19,431,521
Ensembl chr14:19,318,565...19,431,515
JBrowse link
G Dhx58 DEXH-box helicase 58 ISO (MGI:MGI:4421606|PMID:20080593) RGD PMID:20080593 MGI:MGI:4421606 NCBI chr10:88,599,722...88,611,562
Ensembl chr10:88,599,680...88,611,105
JBrowse link
G LOC100910107 ubiquitin carboxyl-terminal hydrolase DUB-1-like ISO (PMID:20368735) RGD PMID:20368735 NCBI chr 1:169,720,247...169,721,788
Ensembl chr 1:169,720,253...169,721,758
JBrowse link
positive regulation of RIG-I signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07025140.1 IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr16:29,834,086...29,936,307 JBrowse link
G Ankrd17 ankyrin repeat domain 17 ISO (PMID:22328336) RGD PMID:22328336 NCBI chr14:19,291,025...19,431,521
Ensembl chr14:19,318,565...19,431,515
JBrowse link
G Dhx58 DEXH-box helicase 58 ISO (MGI:MGI:4421606|PMID:20080593) RGD PMID:20080593 MGI:MGI:4421606 NCBI chr10:88,599,722...88,611,562
Ensembl chr10:88,599,680...88,611,105
JBrowse link
G LOC100910107 ubiquitin carboxyl-terminal hydrolase DUB-1-like ISO (PMID:20368735) RGD PMID:20368735 NCBI chr 1:169,720,247...169,721,788
Ensembl chr 1:169,720,253...169,721,758
JBrowse link
G Pum1 pumilio RNA-binding family member 1 ISO (PMID:25340845) RGD PMID:25340845 NCBI chr 5:148,781,239...148,911,776
Ensembl chr 5:148,781,222...148,911,803
JBrowse link
G Pum2 pumilio RNA-binding family member 2 ISO (PMID:25340845) RGD PMID:25340845 NCBI chr 6:33,786,184...33,865,693
Ensembl chr 6:33,786,197...33,865,687
JBrowse link
G Trim15 tripartite motif containing 15 ISO (PMID:23077300) RGD PMID:23077300 NCBI chr20:2,194,293...2,203,636
Ensembl chr20:2,194,709...2,201,668
JBrowse link
G Usp15 ubiquitin specific peptidase 15 IEA
ISO
GO_REF:0000107
(PMID:24399297)
Ensembl
RGD
PMID:24399297 GO_REF:0000107 NCBI chr 7:66,595,707...66,687,707
Ensembl chr 7:66,595,742...66,687,278
JBrowse link
G Zc3hav1 zinc finger CCCH-type containing, antiviral 1 ISO (PMID:21102435) RGD PMID:21102435 NCBI chr 4:66,012,111...66,062,160
Ensembl chr 4:66,011,915...66,062,089
JBrowse link
G Zcchc3 zinc finger CCHC-type containing 3 ISO (PMID:30193849) RGD PMID:30193849 NCBI chr 3:147,877,321...147,881,434
Ensembl chr 3:147,878,936...147,880,138
JBrowse link
regulation of RIG-I signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nop53 NOP53 ribosome biogenesis factor ISO (PMID:27824081) RGD PMID:27824081 NCBI chr 1:77,836,522...77,843,991
Ensembl chr 1:77,836,196...77,844,189
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    regulation of biological process 13075
      regulation of response to stimulus 3981
        regulation of response to external stimulus 953
          regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway 21
            negative regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway + 11
            regulation of MDA-5 signaling pathway + 7
            regulation of RIG-I signaling pathway + 18
Path 2
Term Annotations click to browse term
  biological_process 20028
    biological regulation 13773
      regulation of biological process 13075
        regulation of cellular process 12561
          signal transduction 7011
            intracellular signal transduction 2594
              cytoplasmic pattern recognition receptor signaling pathway 51
                cytoplasmic pattern recognition receptor signaling pathway in response to virus 30
                  regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway 21
                    negative regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway + 11
                    regulation of MDA-5 signaling pathway + 7
                    regulation of RIG-I signaling pathway + 18
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.