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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of gene expression, epigenetic
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Accession:GO:0040029 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of gene expression; the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA sequence.


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regulation of gene expression, epigenetic term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctcf CCCTC-binding factor ISO
IBA
(PMID:16815976)
PMID:21873635
RGD PMID:16815976, PMID:21873635 RGD:13792537 NCBI chr19:37,600,151...37,649,674
Ensembl chr19:37,600,148...37,649,673
JBrowse link
G Glmn glomulin, FKBP associated protein ISO (PMID:12604780) RGD PMID:12604780 NCBI chr14:3,204,390...3,247,703
Ensembl chr14:3,204,390...3,247,695
JBrowse link
G Gpx1 glutathione peroxidase 1 ISO
IEA
(PMID:16132718)
GO_REF:0000107
RGD
Ensembl
PMID:16132718 GO_REF:0000107 NCBI chr 8:117,117,430...117,118,528
Ensembl chr 8:117,117,430...117,118,522
JBrowse link
G Hdac4 histone deacetylase 4 ISO (PMID:24413532) RGD PMID:24413532 NCBI chr 9:99,052,945...99,299,715
Ensembl chr 9:99,057,089...99,299,715
JBrowse link
G Hdac5 histone deacetylase 5 ISO (PMID:24413532) RGD PMID:24413532 NCBI chr10:90,140,183...90,169,853
Ensembl chr10:90,140,183...90,151,042
JBrowse link
G Hdac6 histone deacetylase 6 ISO (PMID:24413532) RGD PMID:24413532 NCBI chr  X:15,295,372...15,316,673
Ensembl chr  X:15,295,473...15,316,671
JBrowse link
G Klf2 Kruppel-like factor 2 ISO MGI:MGI:3588194 (MGI:MGI:5429781|PMID:22482507) RGD PMID:22482507 MGI:MGI:5429781 NCBI chr16:19,223,087...19,225,037
Ensembl chr16:19,223,087...19,225,037
JBrowse link
G Macroh2a1 macroH2A.1 histone ISO (PMID:20008927) RGD PMID:20008927 NCBI chr17:9,282,109...9,344,698
Ensembl chr17:9,282,675...9,344,678
JBrowse link
G Mecp2 methyl CpG binding protein 2 ISO MGI:MGI:2137311|MGI:MGI:2158354 (MGI:MGI:3576944|PMID:15757975), (MGI:MGI:3789859|PMID:17532643) RGD PMID:15757975, PMID:17532643 MGI:MGI:3576944, MGI:MGI:3789859 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Mir127 microRNA 127 ISO (MGI:MGI:3831054|PMID:19126398) RGD PMID:19126398 MGI:MGI:3831054 NCBI chr 6:133,713,430...133,713,526
Ensembl chr 6:133,713,430...133,713,526
JBrowse link
G Mir136 microRNA 136 ISO (MGI:MGI:3831054|PMID:19126398) RGD PMID:19126398 MGI:MGI:3831054 NCBI chr 6:133,716,761...133,716,842
Ensembl chr 6:133,716,761...133,716,842
JBrowse link
G Morc1 MORC family CW-type zinc finger 1 ISO MGI:MGI:1857787 (MGI:MGI:5694015|PMID:25503965) RGD PMID:25503965 MGI:MGI:5694015 NCBI chr11:54,762,654...55,044,581
Ensembl chr11:54,762,654...55,044,581
JBrowse link
G Mta1 metastasis associated 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:24413532)
Ensembl
UniProt
RGD
PMID:24413532 GO_REF:0000024, GO_REF:0000107 NCBI chr 6:137,911,302...137,950,066
Ensembl chr 6:137,924,293...137,950,075
JBrowse link
G Prdm14 PR/SET domain 14 ISO MGI:MGI:1342772 (MGI:MGI:5429781|PMID:22482507) RGD PMID:22482507 MGI:MGI:5429781 NCBI chr 5:5,710,076...5,730,560
Ensembl chr 5:5,710,392...5,730,560
JBrowse link
G Tdg thymine-DNA glycosylase ISO (MGI:MGI:5141157|PMID:21722948), (MGI:MGI:5487523|PMID:21278727) RGD PMID:21278727, PMID:21722948 MGI:MGI:5141157, MGI:MGI:5487523 NCBI chr 7:27,194,000...27,213,676
Ensembl chr 7:27,193,998...27,214,236
JBrowse link
G Tfap2c transcription factor AP-2 gamma ISO (PMID:24413532) RGD PMID:24413532 NCBI chr 3:170,550,314...170,558,197
Ensembl chr 3:170,550,314...170,558,194
JBrowse link
G Zfp335 zinc finger protein 335 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:23178126)
Ensembl
UniProt
RGD
PMID:23178126 GO_REF:0000024, GO_REF:0000107 NCBI chr 3:161,357,201...161,378,073
Ensembl chr 3:161,357,278...161,376,119
JBrowse link
chromatin silencing term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07062859.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:11,859,630...11,860,001 JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:85,360,439...85,370,283
Ensembl chr17:85,364,483...85,368,208
JBrowse link
G Ctbp1 C-terminal binding protein 1 IEA
ISO
GO_REF:0000107
(PMID:21102443)
Ensembl
RGD
PMID:21102443 GO_REF:0000107 NCBI chr14:82,762,109...82,789,350
Ensembl chr14:82,762,190...82,789,319
JBrowse link
G Eed embryonic ectoderm development IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:154,189,252...154,216,340
Ensembl chr 1:154,189,260...154,216,340
JBrowse link
G H1f0 H1 histone family, member 0 ISO UniProtKB:P09429 (PMID:19158276) RGD PMID:19158276 NCBI chr 7:120,260,776...120,262,636 JBrowse link
G H2ac1 H2A clustered histone 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,422,454...43,422,846
Ensembl chr17:43,422,454...43,422,846
JBrowse link
G H2ac12 H2A clustered histone 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,527,990...44,528,557
Ensembl chr17:44,528,125...44,528,511
JBrowse link
G H2ac20 H2A clustered histone 20 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:198,360,271...198,360,735
Ensembl chr 2:198,360,301...198,360,678
JBrowse link
G H2ac21 H2A clustered histone 21 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:198,359,754...198,360,146
Ensembl chr 2:198,359,754...198,360,146
JBrowse link
G H2afb3 H2A histone family, member B3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:88,602,135...88,602,485
Ensembl chr  X:88,602,135...88,602,485
JBrowse link
G H2aj H2A.J histone IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:170,766,900...170,767,384
Ensembl chr 4:170,766,900...170,767,382
JBrowse link
G H2ax H2A.X variant histone IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:48,665,652...48,666,981
Ensembl chr 8:48,665,652...48,666,981
JBrowse link
G H2az1 H2A.Z variant histone 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:243,105,224...243,107,333
Ensembl chr 2:243,105,674...243,106,956
JBrowse link
G H2az2 H2A.Z variant histone 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:86,687,782...86,706,639
Ensembl chr14:86,687,782...86,706,626
JBrowse link
G Hells helicase, lymphoid specific ISO MGI:MGI:2178586 (MGI:MGI:3510059|PMID:15448183) RGD PMID:15448183 MGI:MGI:3510059 NCBI chr 1:257,901,856...257,953,889
Ensembl chr 1:257,766,691...257,949,183
Ensembl chr 1:257,766,691...257,949,183
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 ISO (PMID:12920187) RGD PMID:12920187 NCBI chr10:82,775,691...82,776,487
Ensembl chr10:82,775,691...82,776,487
JBrowse link
G Hist1h2ac histone cluster 1 H2A family member C IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,520,484...44,521,142
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
JBrowse link
G Hist1h2af histone cluster 1 H2A family member F IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,627,237...43,627,629
Ensembl chr17:43,627,237...43,627,629
JBrowse link
G Hist1h2ah histone cluster 1 H2A family member H IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,632,354...43,632,851
Ensembl chr17:44,747,796...44,748,188
Ensembl chr17:44,747,796...44,748,188
JBrowse link
G Hist1h2ai histone cluster 1, H2ai IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,758,412...44,759,675
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
JBrowse link
G hist1h2ail2 histone cluster 1, H2ai-like2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,794,087...44,794,563
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
JBrowse link
G Hist1h2ak histone cluster 1, H2ak IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,840,990...44,841,382
Ensembl chr17:44,840,990...44,841,382
JBrowse link
G Hist1h2an histone cluster 1, H2an IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,779,174...43,779,775
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
JBrowse link
G Hist1h2ao histone cluster 1, H2ao IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,744,534...44,744,931
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G Hist2h2aa2 histone cluster 2 H2A family member A2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:198,381,678...198,382,247
Ensembl chr 2:198,388,809...198,389,201
Ensembl chr 2:198,388,809...198,389,201
JBrowse link
G Hist2h2aa3 histone cluster 2 H2A family member A3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:198,388,766...198,389,293
Ensembl chr 2:198,388,809...198,389,201
Ensembl chr 2:198,388,809...198,389,201
JBrowse link
G Hist3h2a histone cluster 3, H2a IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:45,297,603...45,299,155 JBrowse link
G Hmgb1 high mobility group box 1 ISO UniProtKB:P07305 (PMID:19158276) RGD PMID:19158276 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
G Hypm huntingtin interacting protein M IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:13,989,401...13,989,955
Ensembl chr  X:13,989,401...13,989,955
JBrowse link
G Kdm1a lysine demethylase 1A ISO (MGI:MGI:4461095|PMID:20123967) RGD PMID:20123967 MGI:MGI:4461095 NCBI chr 5:154,909,003...154,965,171
Ensembl chr 5:154,909,003...154,965,171
JBrowse link
G Kmt2d lysine methyltransferase 2D ISO (MGI:MGI:4849597|PMID:20808952) RGD PMID:20808952 MGI:MGI:4849597 NCBI chr 7:140,507,137...140,542,479
Ensembl chr 7:140,489,492...140,546,908
JBrowse link
G LOC100363125 rCG42854-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:13,991,860...13,992,606
Ensembl chr  X:13,992,064...13,992,429
JBrowse link
G LOC100910554 histone H2A type 1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,738,552...44,739,195
Ensembl chr17:44,738,643...44,739,035
JBrowse link
G LOC103690002 histone H2A.J IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:170,148,955...170,149,479
Ensembl chr 4:170,149,029...170,149,418
JBrowse link
G LOC103690190 histone H2A type 1-E IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,747,686...44,748,229
Ensembl chr17:44,747,796...44,748,188
Ensembl chr17:44,747,796...44,748,188
JBrowse link
G LOC103692167 polycomb group RING finger protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:114,776,680...114,779,447
Ensembl chr 4:114,776,797...114,779,446
JBrowse link
G LOC680063 similar to histone 2a IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G LOC684773 similar to histone 2a IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,777,353...43,777,827
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
JBrowse link
G Macroh2a1 macroH2A.1 histone IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:9,282,109...9,344,698
Ensembl chr17:9,282,675...9,344,678
JBrowse link
G Macroh2a2 macroH2A.2 histone IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:31,352,924...31,402,483
Ensembl chr20:31,352,960...31,402,483
JBrowse link
G Mecp2 methyl CpG binding protein 2 ISO
IEA
MGI:MGI:2137311 (MGI:MGI:3530434|PMID:15608638)
GO_REF:0000107
RGD
Ensembl
PMID:15608638 GO_REF:0000107, MGI:MGI:3530434 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Morf4l1 mortality factor 4 like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:97,473,454...97,494,974
Ensembl chr 8:97,474,092...97,494,834
JBrowse link
G Morf4l2 mortality factor 4 like 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:107,394,468...107,405,564
Ensembl chr  X:107,394,486...107,405,564
JBrowse link
G Msl3 MSL complex subunit 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:27,015,826...27,033,562
Ensembl chr  X:27,015,884...27,033,555
JBrowse link
G Msl3l2 male-specific lethal 3-like 2 (Drosophila) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:37,580,002...37,590,015
Ensembl chr20:37,587,687...37,589,198
JBrowse link
G Pcgf1 polycomb group ring finger 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:113,911,129...113,913,718
Ensembl chr 4:113,910,685...113,913,687
JBrowse link
G Pcgf2 polycomb group ring finger 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:85,631,829...85,642,591
Ensembl chr10:85,632,819...85,636,902
JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent, 1D ISO (MGI:MGI:5551345|PMID:24135283) RGD PMID:24135283 MGI:MGI:5551345 NCBI chr10:72,909,550...72,945,884
Ensembl chr10:72,909,550...72,945,884
JBrowse link
G RGD1562306 similar to H2A histone family, member Z IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:11,859,622...11,860,016 JBrowse link
G RGD1562871 similar to BMI1-like protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:79,546,624...79,547,767
Ensembl chr  X:79,546,624...79,547,767
JBrowse link
G Tnp1 transition protein 1 ISO
ISS
(PMID:11315969)
GO_REF:0000024
RGD
UniProt
PMID:11315969 GO_REF:0000024 NCBI chr 9:80,294,837...80,295,446
Ensembl chr 9:80,294,840...80,295,446
JBrowse link
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 ISO
IBA
(MGI:MGI:4431162|PMID:20080676)
PMID:21873635
RGD PMID:20080676, PMID:21873635 MGI:MGI:4431162, RGD:13792537 NCBI chr 9:16,003,058...16,080,152
Ensembl chr 9:16,003,058...16,080,152
JBrowse link
chromatin silencing at telomere term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dot1l DOT1 like histone lysine methyltransferase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:11,786,105...11,824,742
Ensembl chr 7:11,786,105...11,824,742
JBrowse link
G Dpy30 dpy-30 histone methyltransferase complex regulatory subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:22,296,128...22,316,894
Ensembl chr 6:22,296,128...22,316,894
JBrowse link
G Dydc1 DPY30 domain containing 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:18,648,030...18,667,962
Ensembl chr16:18,648,866...18,667,968
JBrowse link
G Dydc2 DPY30 domain containing 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:18,635,235...18,649,074
Ensembl chr16:18,635,388...18,645,941
JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit ISO UniProtKB:P38827 (MGI:MGI:892875|PMID:9214638) RGD PMID:9214638 MGI:MGI:892875 NCBI chr10:89,104,026...89,139,978
Ensembl chr10:89,104,027...89,130,339
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO UniProtKB:P38827 (PMID:9214638) RGD PMID:9214638 NCBI chr 4:77,284,404...77,347,011
Ensembl chr 4:77,284,404...77,347,011
JBrowse link
G Hat1 histone acetyltransferase 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:58,022,395...58,070,067
Ensembl chr 3:58,022,238...58,070,068
JBrowse link
G Rif1 replication timing regulatory factor 1 ISO (MGI:MGI:5584328|PMID:24735877) RGD PMID:24735877 MGI:MGI:5584328 NCBI chr 3:37,599,540...37,648,818
Ensembl chr 3:37,599,728...37,647,631
JBrowse link
chromatin-mediated maintenance of transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdca4 cell division cycle associated 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:137,396,133...137,421,283
Ensembl chr 6:137,396,140...137,421,283
JBrowse link
G Chek1 checkpoint kinase 1 ISO
ISS
(MGI:MGI:5294291|PMID:18243098)
GO_REF:0000024
RGD
UniProt
PMID:18243098 GO_REF:0000024, MGI:MGI:5294291 NCBI chr 8:39,181,162...39,201,588
Ensembl chr 8:39,181,163...39,243,882
JBrowse link
G Ctnnb1 catenin beta 1 ISO
IEA
(MGI:MGI:5428344|PMID:22723415)
GO_REF:0000107
RGD
Ensembl
PMID:22723415 GO_REF:0000107, MGI:MGI:5428344 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Elof1 elongation factor 1 homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:23,125,987...23,130,980
Ensembl chr 8:23,125,988...23,130,877
JBrowse link
G LOC103693776 zinc finger MIZ domain-containing protein 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:86,514,157...86,530,701
Ensembl chr14:86,514,214...86,530,701
JBrowse link
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 IMP PMID:12917342 UniProt PMID:12917342 RGD:8553888 NCBI chr18:31,728,373...32,704,022
Ensembl chr18:31,728,373...31,749,647
JBrowse link
G Pabpc1l poly(A) binding protein, cytoplasmic 1-like ISO MGI:MGI:5437740 (MGI:MGI:5688228|PMID:26134869) RGD PMID:26134869 MGI:MGI:5688228 NCBI chr 3:160,410,733...160,447,073
Ensembl chr 3:160,410,757...160,444,940
JBrowse link
G Padi2 peptidyl arginine deiminase 2 IEA
ISO
GO_REF:0000107
(PMID:22853951)
Ensembl
RGD
PMID:22853951 GO_REF:0000107 NCBI chr 5:159,428,479...159,471,113
Ensembl chr 5:159,428,515...159,471,144
JBrowse link
G Sertad1 SERTA domain containing 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:84,293,102...84,296,370
Ensembl chr 1:84,293,102...84,296,367
JBrowse link
G Sertad2 SERTA domain containing 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:104,786,649...104,890,022
Ensembl chr14:104,821,215...104,886,197
JBrowse link
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 ISO (PMID:12917342) RGD PMID:12917342 NCBI chr 7:141,355,623...141,366,725
Ensembl chr 7:141,355,994...141,366,732
JBrowse link
G Zmiz1 zinc finger, MIZ-type containing 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:1,749,191...1,954,633
Ensembl chr16:1,749,191...1,954,614
JBrowse link
G Zmiz2 zinc finger, MIZ-type containing 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:86,645,875...86,662,419
Ensembl chr14:86,652,365...86,661,441
JBrowse link
dosage compensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Macroh2a1 macroH2A.1 histone ISO (PMID:15053874) RGD PMID:15053874 NCBI chr17:9,282,109...9,344,698
Ensembl chr17:9,282,675...9,344,678
JBrowse link
G Macroh2a2 macroH2A.2 histone ISO (PMID:11331621) RGD PMID:11331621 NCBI chr20:31,352,924...31,402,483
Ensembl chr20:31,352,960...31,402,483
JBrowse link
dosage compensation by inactivation of X chromosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca1 BRCA1, DNA repair associated ISO
IEA
IBA
(MGI:MGI:2389513|PMID:12419249)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:12419249, PMID:21873635 GO_REF:0000107, MGI:MGI:2389513, RGD:13792537 NCBI chr10:89,394,821...89,455,093
Ensembl chr10:89,394,803...89,454,681
JBrowse link
G Eif1 eukaryotic translation initiation factor 1 ISO (MGI:MGI:3694307|PMID:16789828) RGD PMID:16789828 MGI:MGI:3694307 NCBI chr10:88,227,455...88,229,546
Ensembl chr10:88,227,360...88,229,765
JBrowse link
G Exosc10 exosome component 10 ISO (MGI:MGI:3694307|PMID:16789828) RGD PMID:16789828 MGI:MGI:3694307 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U ISO (MGI:MGI:4831049|PMID:20833368) RGD PMID:20833368 MGI:MGI:4831049 NCBI chr13:96,222,093...96,238,845
Ensembl chr13:96,225,912...96,238,572
JBrowse link
G Lrif1 ligand dependent nuclear receptor interacting factor 1 ISS
ISO
IEA
GO_REF:0000024
(PMID:23542155)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23542155 GO_REF:0000024, GO_REF:0000107 NCBI chr 2:209,358,668...209,448,123
Ensembl chr 2:209,358,760...209,448,123
JBrowse link
G Mettl3 methyltransferase-like 3 ISO (PMID:27602518) RGD PMID:27602518 NCBI chr15:28,710,299...28,721,491
Ensembl chr15:28,710,300...28,721,127
JBrowse link
G Rbm15 RNA binding motif protein 15 ISO (PMID:27602518) RGD PMID:27602518 NCBI chr 2:210,079,678...210,090,200
Ensembl chr 2:210,081,770...210,088,949
JBrowse link
G Rbm15b RNA binding motif protein 15B ISO (PMID:27602518) RGD PMID:27602518 NCBI chr 8:115,618,242...115,623,068
Ensembl chr 8:115,618,555...115,621,394
JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO MGI:MGI:3586547 (MGI:MGI:3821390|PMID:18425126), (MGI:MGI:5532809|PMID:23754746)
(PMID:23542155)
RGD PMID:18425126, PMID:23542155, PMID:23754746 MGI:MGI:3821390, MGI:MGI:5532809 NCBI chr 9:119,675,750...119,818,620
Ensembl chr 9:119,676,628...119,818,310
JBrowse link
G Upf1 UPF1, RNA helicase and ATPase ISO (MGI:MGI:3694307|PMID:16789828) RGD PMID:16789828 MGI:MGI:3694307 NCBI chr16:20,824,888...20,845,632
Ensembl chr16:20,824,864...20,845,243
JBrowse link
G Ythdc1 YTH domain containing 1 ISS
ISO
GO_REF:0000024
(PMID:27602518)
UniProt
RGD
PMID:27602518 GO_REF:0000024 NCBI chr14:22,971,834...23,002,326
Ensembl chr14:22,971,836...23,002,011
JBrowse link
heterochromatin maintenance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A ISO (MGI:MGI:5578697|PMID:24335282) RGD PMID:24335282 MGI:MGI:5578697 NCBI chr 5:151,904,687...151,977,973
Ensembl chr 5:151,904,684...151,977,636
JBrowse link
G Hdac2 histone deacetylase 2 ISO (PMID:19372552) RGD PMID:19372552 NCBI chr20:43,084,870...43,108,198
Ensembl chr20:43,084,870...43,108,198
JBrowse link
G Mthfr methylenetetrahydrofolate reductase ISO (PMID:24769206) RGD PMID:24769206 NCBI chr 5:164,844,642...164,864,360
Ensembl chr 5:164,845,925...164,860,910
JBrowse link
G Sirt1 sirtuin 1 ISO
IEA
(PMID:15469825)
GO_REF:0000107
RGD
Ensembl
PMID:15469825 GO_REF:0000107 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Ube2b ubiquitin-conjugating enzyme E2B ISO MGI:MGI:2183933 (MGI:MGI:3720437|PMID:17488778) RGD PMID:17488778 MGI:MGI:3720437 NCBI chr10:37,439,947...37,454,867
Ensembl chr10:37,441,284...37,455,022
JBrowse link
G Wdhd1 WD repeat and HMG-box DNA binding protein 1 ISO (MGI:MGI:5317038|PMID:21266480) RGD PMID:21266480 MGI:MGI:5317038 NCBI chr15:24,021,674...24,056,073
Ensembl chr15:24,021,674...24,056,073
JBrowse link
heterochromatin organization involved in chromatin silencing term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (MGI:MGI:5532809|PMID:23754746), (MGI:MGI:5803776|PMID:26391951) RGD PMID:23754746, PMID:26391951 MGI:MGI:5532809, MGI:MGI:5803776 NCBI chr 9:119,675,750...119,818,620
Ensembl chr 9:119,676,628...119,818,310
JBrowse link
inactivation of paternal X chromosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prdm14 PR/SET domain 14 ISO MGI:MGI:3805889 (MGI:MGI:5548017|PMID:24268575) RGD PMID:24268575 MGI:MGI:5548017 NCBI chr 5:5,710,076...5,730,560
Ensembl chr 5:5,710,392...5,730,560
JBrowse link
inactivation of X chromosome by DNA methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3b DNA methyltransferase 3 beta ISO MGI:MGI:3047834 (MGI:MGI:5532809|PMID:23754746) RGD PMID:23754746 MGI:MGI:5532809 NCBI chr 3:149,131,541...149,170,061
Ensembl chr 3:149,131,785...149,208,786
JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO MGI:MGI:3586547 (MGI:MGI:3821390|PMID:18425126) RGD PMID:18425126 MGI:MGI:3821390 NCBI chr 9:119,675,750...119,818,620
Ensembl chr 9:119,676,628...119,818,310
JBrowse link
inactivation of X chromosome by genetic imprinting term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcgf3 polycomb group ring finger 3 ISO (MGI:MGI:5908473|PMID:28596365) RGD PMID:28596365 MGI:MGI:5908473 NCBI chr14:2,247,805...2,297,155
Ensembl chr14:2,247,808...2,297,155
JBrowse link
G Pcgf5 polycomb group ring finger 5 ISO
IBA
(MGI:MGI:5908473|PMID:28596365)
PMID:21873635
RGD PMID:28596365, PMID:21873635 MGI:MGI:5908473, RGD:13792537 NCBI chr 1:254,974,688...255,090,925
Ensembl chr 1:254,974,789...255,086,207
JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (MGI:MGI:5532809|PMID:23754746) RGD PMID:23754746 MGI:MGI:5532809 NCBI chr 9:119,675,750...119,818,620
Ensembl chr 9:119,676,628...119,818,310
JBrowse link
negative regulation of chromatin silencing term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atad2 ATPase family, AAA domain containing 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:97,984,754...98,027,379
Ensembl chr 7:97,984,862...98,026,052
JBrowse link
G Atad2b ATPase family, AAA domain containing 2B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:28,998,080...29,066,850
Ensembl chr 6:29,012,007...29,163,134
JBrowse link
G H1f0 H1 histone family, member 0 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:120,260,776...120,262,636 JBrowse link
G H1f1 H1.1 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,614,101...43,614,844
Ensembl chr17:43,614,101...43,614,844
JBrowse link
G H1f10 H1.10 linker histone IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:119,889,016...119,892,661
Ensembl chr 4:119,889,371...119,889,949
JBrowse link
G H1f2 H1.2 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,638,938...43,640,445
Ensembl chr17:43,639,749...43,640,387
JBrowse link
G H1f4 H1.4 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,734,461...43,735,120
Ensembl chr17:43,734,461...43,735,120
JBrowse link
G H1f5 H1.5 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,766,313...44,766,981
Ensembl chr17:44,766,313...44,766,981
JBrowse link
G H1f6 H1.6 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,675,190...43,675,934
Ensembl chr17:43,675,190...43,675,934
JBrowse link
G H1f8 H1.8 linker histone IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:147,844,658...147,849,779
Ensembl chr 4:147,844,658...147,849,779
JBrowse link
G H4f3 H1.3 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,797,711...43,798,450
Ensembl chr17:43,797,721...43,798,383
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:82,775,691...82,776,487
Ensembl chr10:82,775,691...82,776,487
JBrowse link
negative regulation of gene expression, epigenetic term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmi1 BMI1 proto-oncogene, polycomb ring finger ISO (PMID:24623306) RGD PMID:24623306 NCBI chr17:85,360,439...85,370,283
Ensembl chr17:85,364,483...85,368,208
JBrowse link
G Crebzf CREB/ATF bZIP transcription factor ISO (PMID:15705566) RGD PMID:15705566 NCBI chr 1:156,290,215...156,296,891
Ensembl chr 1:156,294,519...156,296,161
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO (MGI:MGI:3765099|PMID:18056424) RGD PMID:18056424 MGI:MGI:3765099 NCBI chr 3:149,131,541...149,170,061
Ensembl chr 3:149,131,785...149,208,786
JBrowse link
G Epc1 enhancer of polycomb homolog 1 ISO (PMID:10976108) RGD PMID:10976108 NCBI chr17:57,303,968...57,394,975
Ensembl chr17:57,304,933...57,394,985
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO (PMID:20154697), (PMID:24623306) RGD PMID:20154697, PMID:24623306 NCBI chr 4:77,284,404...77,347,011
Ensembl chr 4:77,284,404...77,347,011
JBrowse link
G Lhx2 LIM homeobox 2 IEA
ISO
GO_REF:0000107
(MGI:MGI:5817507|PMID:28053041)
Ensembl
RGD
PMID:28053041 GO_REF:0000107, MGI:MGI:5817507 NCBI chr 3:22,628,674...22,658,447
Ensembl chr 3:22,640,545...22,658,446
JBrowse link
G Macroh2a1 macroH2A.1 histone ISO (PMID:19734898), (PMID:23595991), (PMID:24071584) RGD PMID:19734898, PMID:23595991, PMID:24071584 NCBI chr17:9,282,109...9,344,698
Ensembl chr17:9,282,675...9,344,678
JBrowse link
G Macroh2a2 macroH2A.2 histone ISO (PMID:19734898) RGD PMID:19734898 NCBI chr20:31,352,924...31,402,483
Ensembl chr20:31,352,960...31,402,483
JBrowse link
G Morc2 MORC family CW-type zinc finger 2 ISO (PMID:28581500), (PMID:29211708) RGD PMID:28581500, PMID:29211708 NCBI chr14:83,889,138...83,930,263
Ensembl chr14:83,889,089...83,930,522
JBrowse link
G Mphosph8 M-phase phosphoprotein 8 ISS
ISO
GO_REF:0000024
(PMID:26022416), (PMID:28581500), (PMID:29211708)
UniProt
RGD
PMID:26022416, PMID:28581500, PMID:29211708 GO_REF:0000024 NCBI chr15:36,918,843...36,946,712
Ensembl chr15:36,918,843...36,946,708
JBrowse link
G Pphln1 periphilin 1 ISO (PMID:26022416), (PMID:28581500) RGD PMID:26022416, PMID:28581500 NCBI chr 7:134,602,109...134,693,807
Ensembl chr 7:134,603,121...134,695,864
JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent, 1D ISO (PMID:23242139) RGD PMID:23242139 NCBI chr10:72,909,550...72,945,884
Ensembl chr10:72,909,550...72,945,884
JBrowse link
G Spi1 Spi-1 proto-oncogene ISO (PMID:20139074) RGD PMID:20139074 NCBI chr 3:79,918,127...79,937,708
Ensembl chr 3:79,918,969...79,938,301
JBrowse link
G Tasor transcription activation suppressor ISO (PMID:26022416), (PMID:28581500), (PMID:29211708) RGD PMID:26022416, PMID:28581500, PMID:29211708 NCBI chr16:3,050,506...3,108,168
Ensembl chr16:3,051,449...3,105,531
JBrowse link
G Trim27 tripartite motif-containing 27 ISO (PMID:10976108) RGD PMID:10976108 NCBI chr17:45,613,863...45,626,212
Ensembl chr17:45,613,864...45,626,212
JBrowse link
positive regulation of chromatin silencing term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mier1 MIER1 transcriptional regulator ISO (PMID:12482978) RGD PMID:12482978 NCBI chr 5:122,642,065...122,693,642
Ensembl chr 5:122,641,885...122,693,635
JBrowse link
G Sin3a SIN3 transcription regulator family member A ISO (PMID:22783022) RGD PMID:22783022 NCBI chr 8:61,748,590...61,803,314
Ensembl chr 8:61,762,768...61,803,099
JBrowse link
positive regulation of chromatin silencing at telomere term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt6 sirtuin 6 ISO (PMID:21847107) RGD PMID:21847107 NCBI chr 7:10,937,622...10,943,048
Ensembl chr 7:10,937,599...10,943,063
JBrowse link
positive regulation of chromatin-mediated maintenance of transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 ISO
IEA
(MGI:MGI:5428344|PMID:22723415)
GO_REF:0000107
RGD
Ensembl
PMID:22723415 GO_REF:0000107, MGI:MGI:5428344 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
positive regulation of gene expression, epigenetic term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ep300 E1A binding protein p300 ISO (PMID:25818647) RGD PMID:25818647 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
JBrowse link
G Macroh2a1 macroH2A.1 histone ISO (PMID:25526730) RGD PMID:25526730 NCBI chr17:9,282,109...9,344,698
Ensembl chr17:9,282,675...9,344,678
JBrowse link
G Sphk2 sphingosine kinase 2 ISO (PMID:19729656) RGD PMID:19729656 NCBI chr 1:101,692,972...101,700,604
Ensembl chr 1:101,692,973...101,697,277
JBrowse link
G Wbp2 WW domain binding protein 2 IEA
ISO
GO_REF:0000107
(PMID:23233354)
Ensembl
RGD
PMID:23233354 GO_REF:0000107 NCBI chr10:104,629,563...104,637,906
Ensembl chr10:104,630,573...104,637,823
JBrowse link
random inactivation of X chromosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdyl chromodomain Y-like ISO
ISS
(MGI:MGI:5551942|PMID:24144980)
GO_REF:0000024
RGD
UniProt
PMID:24144980 GO_REF:0000024, MGI:MGI:5551942 NCBI chr17:29,672,925...29,895,416
Ensembl chr17:29,674,164...29,895,386
JBrowse link
G LOC100910646 E3 ubiquitin-protein ligase RLIM-like ISO (MGI:MGI:4418586|PMID:19945382) RGD PMID:19945382 MGI:MGI:4418586 NCBI chr  X:73,757,664...73,778,757 JBrowse link
G NEWGENE_1559832 ring finger protein, LIM domain interacting IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:74,838,159...74,859,561
Ensembl chr  X:73,762,691...73,778,674
Ensembl chr  X:73,762,691...73,778,674
JBrowse link
G Rlim ring finger protein, LIM domain interacting ISO
IBA
(PMID:19945382)
PMID:21873635
RGD PMID:19945382, PMID:21873635 RGD:13792537 NCBI chr  X:73,757,664...73,778,763
Ensembl chr  X:73,762,691...73,778,674
Ensembl chr  X:73,762,691...73,778,674
JBrowse link
regulation of chromatin silencing term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hira histone cell cycle regulator IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:86,168,196...86,276,430
Ensembl chr11:86,168,196...86,276,430
JBrowse link
G LOC100911837 protein HIRA-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:85,802,536...85,896,680
Ensembl chr11:85,802,605...85,895,613
JBrowse link
G Uty ubiquitously transcribed tetratricopeptide repeat containing, Y-linked ISO (MGI:MGI:5305502|PMID:22192413) RGD PMID:22192413 MGI:MGI:5305502 NCBI chr  Y:1,065,274...1,206,127
Ensembl chr  Y:989,240...1,206,096
JBrowse link
regulation of chromatin silencing at telomere term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc45 cell division cycle 45 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:86,328,785...86,354,099
Ensembl chr11:86,329,012...86,358,453
JBrowse link
regulation of dosage compensation by inactivation of X chromosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ftx FTX transcript, XIST regulator ISO (MGI:MGI:4936795|PMID:21118898), (MGI:MGI:5581575|PMID:24613346) RGD PMID:21118898, PMID:24613346 MGI:MGI:4936795, MGI:MGI:5581575 NCBI chr  X:74,440,265...74,484,164 JBrowse link
G Jpx JPX transcript, XIST activator ISO MGI:MGI:4887255 (MGI:MGI:4881359|PMID:21029862), (MGI:MGI:5581575|PMID:24613346) RGD PMID:21029862, PMID:24613346 MGI:MGI:4881359, MGI:MGI:5581575 NCBI chr  X:74,360,739...74,410,973 JBrowse link
G LOC100910646 E3 ubiquitin-protein ligase RLIM-like ISO (MGI:MGI:5581575|PMID:24613346) RGD PMID:24613346 MGI:MGI:5581575 NCBI chr  X:73,757,664...73,778,757 JBrowse link
G NEWGENE_1559832 ring finger protein, LIM domain interacting IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:74,838,159...74,859,561
Ensembl chr  X:73,762,691...73,778,674
Ensembl chr  X:73,762,691...73,778,674
JBrowse link
G Rlim ring finger protein, LIM domain interacting IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:73,757,664...73,778,763
Ensembl chr  X:73,762,691...73,778,674
Ensembl chr  X:73,762,691...73,778,674
JBrowse link
regulation of gene expression by genetic imprinting term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid4a AT-rich interaction domain 4A ISO MGI:MGI:2137512 (MGI:MGI:3686546|PMID:17043311) RGD PMID:17043311 MGI:MGI:3686546 NCBI chr 6:93,461,713...93,532,901
Ensembl chr 6:93,461,713...93,532,901
JBrowse link
G Arid4b AT-rich interaction domain 4B ISO MGI:MGI:2444354 (MGI:MGI:3686546|PMID:17043311) RGD PMID:17043311 MGI:MGI:3686546 NCBI chr17:53,831,353...53,955,897
Ensembl chr17:53,833,023...53,915,076
JBrowse link
G Brca1 BRCA1, DNA repair associated ISO
IEA
(MGI:MGI:5009779|PMID:20820192)
GO_REF:0000107
RGD
Ensembl
PMID:20820192 GO_REF:0000107, MGI:MGI:5009779 NCBI chr10:89,394,821...89,455,093
Ensembl chr10:89,394,803...89,454,681
JBrowse link
G Ctcf CCCTC-binding factor IEA
ISO
GO_REF:0000107
(MGI:MGI:2450195|PMID:12461525), (MGI:MGI:3044090|PMID:14716017), (MGI:MGI:3045676|PMID:15143173)
Ensembl
RGD
PMID:12461525, PMID:14716017, PMID:15143173 GO_REF:0000107, MGI:MGI:2450195, MGI:MGI:3044090, MGI:MGI:3045676 NCBI chr19:37,600,151...37,649,674
Ensembl chr19:37,600,148...37,649,673
JBrowse link
G Ctcfl CCCTC-binding factor like ISO (MGI:MGI:3692841|PMID:17048991) RGD PMID:17048991 MGI:MGI:3692841 NCBI chr 3:171,145,203...171,168,375
Ensembl chr 3:171,145,584...171,166,454
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha ISO MGI:MGI:2182412|MGI:MGI:3047552|MGI:MGI:3047824 (MGI:MGI:2178074|PMID:11934864), (MGI:MGI:3045942|PMID:15215868), (MGI:MGI:5009774|PMID:21047779) RGD PMID:11934864, PMID:15215868, PMID:21047779 MGI:MGI:2178074, MGI:MGI:3045942, MGI:MGI:5009774 NCBI chr 6:28,205,375...28,346,052
Ensembl chr 6:28,235,695...28,340,577
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO MGI:MGI:2182410|MGI:MGI:2182414 (MGI:MGI:2178074|PMID:11934864) RGD PMID:11934864 MGI:MGI:2178074 NCBI chr 3:149,131,541...149,170,061
Ensembl chr 3:149,131,785...149,208,786
JBrowse link
G Eed embryonic ectoderm development ISO MGI:MGI:1856856 (MGI:MGI:2655036|PMID:12627233) RGD PMID:12627233 MGI:MGI:2655036 NCBI chr 1:154,189,252...154,216,340
Ensembl chr 1:154,189,260...154,216,340
JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha ISO (MGI:MGI:5009774|PMID:21047779) RGD PMID:21047779 MGI:MGI:5009774 NCBI chr 1:82,097,244...82,108,238
Ensembl chr 1:82,097,247...82,108,203
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO (MGI:MGI:5009774|PMID:21047779) RGD PMID:21047779 MGI:MGI:5009774 NCBI chr11:65,060,884...65,208,842
Ensembl chr11:65,066,235...65,209,268
JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 IEA
ISO
GO_REF:0000107
MGI:MGI:2429679 (MGI:MGI:2389526|PMID:12410230), (MGI:MGI:3054495|PMID:15340049)
Ensembl
RGD
PMID:12410230, PMID:15340049 GO_REF:0000107, MGI:MGI:2389526, MGI:MGI:3054495 NCBI chr 1:216,293,087...216,630,339
Ensembl chr 1:216,293,087...216,630,339
JBrowse link
G Kdm1b lysine demethylase 1B ISO MGI:MGI:4359289 (MGI:MGI:4358629|PMID:19727073) RGD PMID:19727073 MGI:MGI:4358629 NCBI chr17:17,987,972...18,028,808
Ensembl chr17:17,987,972...18,028,808
JBrowse link
G Mecp2 methyl CpG binding protein 2 ISO
IEA
MGI:MGI:2137311 (MGI:MGI:3530434|PMID:15608638)
GO_REF:0000107
(PMID:15608638)
RGD
Ensembl
PMID:15608638 GO_REF:0000107, MGI:MGI:3530434 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Prmt7 protein arginine methyltransferase 7 ISO
ISS
(MGI:MGI:3692841|PMID:17048991)
GO_REF:0000024
RGD
UniProt
PMID:17048991 GO_REF:0000024, MGI:MGI:3692841 NCBI chr19:38,189,605...38,237,155
Ensembl chr19:38,189,605...38,237,308
JBrowse link
G Zfp57 zinc finger protein 57 ISO
ISS
(PMID:18622393)
GO_REF:0000024
(MGI:MGI:3826319|PMID:18854139)
RGD
UniProt
PMID:18622393, PMID:18854139 GO_REF:0000024, MGI:MGI:3826319 NCBI chr20:2,014,177...2,020,488
Ensembl chr20:2,014,170...2,020,537
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20017
    regulation of biological process 13081
      regulation of metabolic process 7007
        regulation of macromolecule metabolic process 6492
          regulation of gene expression 4799
            regulation of gene expression, epigenetic 153
              dosage compensation + 23
              negative regulation of gene expression, epigenetic + 94
              positive regulation of gene expression, epigenetic + 29
              regulation of gene expression by genetic imprinting + 17
Path 2
Term Annotations click to browse term
  biological_process 20017
    biological regulation 13767
      regulation of biological process 13081
        regulation of metabolic process 7007
          regulation of macromolecule metabolic process 6492
            regulation of gene expression 4799
              regulation of gene expression, epigenetic 153
                dosage compensation + 23
                negative regulation of gene expression, epigenetic + 94
                positive regulation of gene expression, epigenetic + 29
                regulation of gene expression by genetic imprinting + 17
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.