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ONTOLOGY REPORT - ANNOTATIONS


Term:intraciliary transport
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Accession:GO:0042073 term browser browse the term
Definition:The bidirectional movement of large protein complexes along microtubules within a cilium, mediated by motor proteins.
Comment:Note that we deem cilium and microtubule-based flagellum to be equivalent.
Synonyms:exact_synonym: intraflagellar transport;   intraflagellar transport involved in cilium organization;   intraflagellar transport involved in microtubule-based flagellum organisation
 related_synonym: IFT
 alt_id: GO:0035734
 xref: Wikipedia:Intraflagellar_transport


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intraciliary transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ARL3 ADP ribosylation factor like GTPase 3 JBrowse link 10 102,735,325 102,775,849 RGD:9068941
G BBS12 Bardet-Biedl syndrome 12 JBrowse link 4 126,058,682 126,070,948 RGD:9068941
G CILK1 ciliogenesis associated kinase 1 JBrowse link 6 54,198,594 54,255,449 RGD:9068941
G HSPB11 heat shock protein family B (small) member 11 JBrowse link 1 54,790,168 54,814,281 RGD:9068941
G IFT122 intraflagellar transport 122 JBrowse link 3 133,851,433 133,930,117 RGD:9068941
G IFT140 intraflagellar transport 140 JBrowse link 16 1,566,309 1,662,833 RGD:9068941
G IFT172 intraflagellar transport 172 JBrowse link 2A 27,536,534 27,580,406 RGD:9068941
G IFT20 intraflagellar transport 20 JBrowse link 17 28,941,303 28,948,129 RGD:9068941
G IFT27 intraflagellar transport 27 JBrowse link 22 35,509,349 35,527,132 RGD:9068941
G IFT46 intraflagellar transport 46 JBrowse link 11 117,312,894 117,335,319 RGD:9068941
G IFT52 intraflagellar transport 52 JBrowse link 20 41,023,517 41,080,500 RGD:9068941
G IFT57 intraflagellar transport 57 JBrowse link 3 112,220,461 112,282,317 RGD:9068941
G IFT74 intraflagellar transport 74 JBrowse link 9 27,409,962 27,514,756 RGD:9068941
G IFT81 intraflagellar transport 81 JBrowse link 12 111,093,661 111,186,786 RGD:9068941
G IFT88 intraflagellar transport 88 JBrowse link 13 20,205,881 20,331,204 RGD:9068941
G LCA5 lebercilin LCA5 JBrowse link 6 80,636,181 80,688,609 RGD:9068941
G LCA5L lebercilin LCA5 like JBrowse link 21 39,096,868 39,136,598 RGD:9068941
G MAK male germ cell associated kinase JBrowse link 6 10,882,745 10,956,579 RGD:9068941
G RPGR retinitis pigmentosa GTPase regulator JBrowse link X 38,426,895 38,485,140 RGD:9068941
G SSNA1 SS nuclear autoantigen 1 JBrowse link 9 137,217,653 137,219,406 RGD:9068941
G TRAF3IP1 TRAF3 interacting protein 1 JBrowse link 2B 244,404,777 244,481,785 RGD:9068941
G TTC26 tetratricopeptide repeat domain 26 JBrowse link 7 143,578,586 143,636,362 RGD:9068941
G TTC30A tetratricopeptide repeat domain 30A JBrowse link 2B 182,596,695 182,601,363 RGD:9068941
G TTC30B tetratricopeptide repeat domain 30B JBrowse link 2B 182,531,298 182,535,393 RGD:9068941
G TUB TUB bipartite transcription factor JBrowse link 11 7,882,680 7,969,434 RGD:9068941
G WDR34 WD repeat domain 34 JBrowse link 9 128,422,958 128,447,444 RGD:9068941
G WDR35 WD repeat domain 35 JBrowse link 2A 20,014,127 20,093,794 RGD:9068941
intraciliary anterograde transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CILK1 ciliogenesis associated kinase 1 JBrowse link 6 54,198,594 54,255,449 RGD:9068941
G IFT122 intraflagellar transport 122 JBrowse link 3 133,851,433 133,930,117 RGD:9068941
G IFT52 intraflagellar transport 52 JBrowse link 20 41,023,517 41,080,500 RGD:9068941
G TTC26 tetratricopeptide repeat domain 26 JBrowse link 7 143,578,586 143,636,362 RGD:9068941
intraciliary retrograde transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CILK1 ciliogenesis associated kinase 1 JBrowse link 6 54,198,594 54,255,449 RGD:9068941
G DYNC2H1 dynein cytoplasmic 2 heavy chain 1 JBrowse link 11 101,536,471 101,909,194 RGD:9068941
G DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 JBrowse link 2A 44,706,777 44,760,757 RGD:9068941
G IFT122 intraflagellar transport 122 JBrowse link 3 133,851,433 133,930,117 RGD:9068941
G IFT140 intraflagellar transport 140 JBrowse link 16 1,566,309 1,662,833 RGD:9068941
G IFT43 intraflagellar transport 43 JBrowse link 14 75,387,742 75,485,904 RGD:9068941
G TTC21A tetratricopeptide repeat domain 21A JBrowse link 3 39,284,159 39,315,583 RGD:9068941
G TTC21B tetratricopeptide repeat domain 21B JBrowse link 2B 170,618,800 170,698,903 RGD:9068941
G WDR19 WD repeat domain 19 JBrowse link 4 39,365,204 39,470,074 RGD:9068941
G WDR35 WD repeat domain 35 JBrowse link 2A 20,014,127 20,093,794 RGD:9068941
intraciliary transport involved in cilium assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CEP131 centrosomal protein 131 JBrowse link 17 81,343,396 81,376,891 RGD:9068941
G CLUAP1 clusterin associated protein 1 JBrowse link 16 3,600,370 3,637,622 RGD:9068941
G DYNC2H1 dynein cytoplasmic 2 heavy chain 1 JBrowse link 11 101,536,471 101,909,194 RGD:9068941
G DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 JBrowse link 2A 44,706,777 44,760,757 RGD:9068941
G DYNLL1 dynein light chain LC8-type 1 JBrowse link 12 121,452,118 121,454,550 RGD:9068941
G DYNLL2 dynein light chain LC8-type 2 JBrowse link 17 57,021,357 57,025,750 RGD:9068941
G DYNLRB1 dynein light chain roadblock-type 1 JBrowse link 20 31,976,943 32,001,199 RGD:9068941
G DYNLRB2 dynein light chain roadblock-type 2 JBrowse link 16 80,567,709 80,577,616 RGD:9068941
G HSPB11 heat shock protein family B (small) member 11 JBrowse link 1 54,790,168 54,814,281 RGD:9068941
G IFT122 intraflagellar transport 122 JBrowse link 3 133,851,433 133,930,117 RGD:9068941
G IFT140 intraflagellar transport 140 JBrowse link 16 1,566,309 1,662,833 RGD:9068941
G IFT172 intraflagellar transport 172 JBrowse link 2A 27,536,534 27,580,406 RGD:9068941
G IFT20 intraflagellar transport 20 JBrowse link 17 28,941,303 28,948,129 RGD:9068941
G IFT22 intraflagellar transport 22 JBrowse link 7 106,693,852 106,701,668 RGD:9068941
G IFT27 intraflagellar transport 27 JBrowse link 22 35,509,349 35,527,132 RGD:9068941
G IFT43 intraflagellar transport 43 JBrowse link 14 75,387,742 75,485,904 RGD:9068941
G IFT46 intraflagellar transport 46 JBrowse link 11 117,312,894 117,335,319 RGD:9068941
G IFT52 intraflagellar transport 52 JBrowse link 20 41,023,517 41,080,500 RGD:9068941
G IFT57 intraflagellar transport 57 JBrowse link 3 112,220,461 112,282,317 RGD:9068941
G IFT74 intraflagellar transport 74 JBrowse link 9 27,409,962 27,514,756 RGD:9068941
G IFT80 intraflagellar transport 80 JBrowse link 3 165,327,511 165,469,795 RGD:9068941
G IFT81 intraflagellar transport 81 JBrowse link 12 111,093,661 111,186,786 RGD:9068941
G IFT88 intraflagellar transport 88 JBrowse link 13 20,205,881 20,331,204 RGD:9068941
G KIF17 kinesin family member 17 JBrowse link 1 20,656,440 20,711,288 RGD:9068941
G KIF3A kinesin family member 3A JBrowse link 5 134,268,505 134,315,431 RGD:9068941
G KIF3B kinesin family member 3B JBrowse link 20 29,727,021 29,750,223 RGD:9068941
G KIF3C kinesin family member 3C JBrowse link 2A 26,020,025 26,074,961 RGD:9068941
G KIFAP3 kinesin associated protein 3 JBrowse link 1 149,127,544 149,280,831 RGD:9068941
G PCM1 pericentriolar material 1 JBrowse link 8 14,093,976 14,199,691 RGD:9068941
G SSX2IP SSX family member 2 interacting protein JBrowse link 1 86,052,733 86,105,769 RGD:9068941
G TNPO1 transportin 1 JBrowse link 5 43,001,210 43,098,077 RGD:9068941
G TRAF3IP1 TRAF3 interacting protein 1 JBrowse link 2B 244,404,777 244,481,785 RGD:9068941
G TRIP11 thyroid hormone receptor interactor 11 JBrowse link 14 91,945,392 92,019,231 RGD:9068941
G TTC21B tetratricopeptide repeat domain 21B JBrowse link 2B 170,618,800 170,698,903 RGD:9068941
G TTC26 tetratricopeptide repeat domain 26 JBrowse link 7 143,578,586 143,636,362 RGD:9068941
G TTC30B tetratricopeptide repeat domain 30B JBrowse link 2B 182,531,298 182,535,393 RGD:9068941
G WDR19 WD repeat domain 19 JBrowse link 4 39,365,204 39,470,074 RGD:9068941
G WDR34 WD repeat domain 34 JBrowse link 9 128,422,958 128,447,444 RGD:9068941
G WDR35 WD repeat domain 35 JBrowse link 2A 20,014,127 20,093,794 RGD:9068941
G WDR60 WD repeat domain 60 JBrowse link 7 162,142,751 162,219,783 RGD:9068941
regulation of intraciliary retrograde transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TCTEX1D2 Tctex1 domain containing 2 JBrowse link 3 203,580,040 203,607,193 RGD:9068941
G TTC21B tetratricopeptide repeat domain 21B JBrowse link 2B 170,618,800 170,698,903 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15702
    localization 6337
      macromolecule localization 3121
        protein localization 2780
          protein-containing complex localization 285
            intraciliary transport 52
              intraciliary anterograde transport + 4
              intraciliary retrograde transport + 11
              intraciliary transport involved in cilium assembly 40
Path 2
Term Annotations click to browse term
  biological_process 15702
    localization 6337
      establishment of localization 5026
        transport 4906
          nitrogen compound transport 2386
            amide transport 2080
              peptide transport 2047
                protein transport 2009
                  microtubule-based protein transport 67
                    protein transport along microtubule 67
                      intraciliary transport 52
                        intraciliary anterograde transport + 4
                        intraciliary retrograde transport + 11
                        intraciliary transport involved in cilium assembly 40
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.