ONTOLOGY REPORT - ANNOTATIONS


Term:intraciliary transport
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Accession:GO:0042073 term browser browse the term
Definition:The bidirectional movement of large protein complexes along microtubules within a cilium, mediated by motor proteins.
Comment:Note that we deem cilium and microtubule-based flagellum to be equivalent.
Synonyms:exact_synonym: intraflagellar transport;   intraflagellar transport involved in cilium organization;   intraflagellar transport involved in microtubule-based flagellum organisation
 related_synonym: IFT
 alt_id: GO:0035734
 xref: Wikipedia:Intraflagellar_transport


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intraciliary transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arl3 ADP ribosylation factor like GTPase 3 JBrowse link 1 266,287,015 266,333,099 RGD:1624291
RGD:1600115
G Bbs12 Bardet-Biedl syndrome 12 JBrowse link 2 124,048,513 124,057,026 RGD:1624291
RGD:1600115
G Cep131 centrosomal protein 131 JBrowse link 10 109,243,240 109,267,636 RGD:1624291
G Hspb11 heat shock protein family B (small), member 11 JBrowse link 5 126,856,128 126,882,913 RGD:1600115
G Ick intestinal cell kinase JBrowse link 8 85,413,998 85,473,374 RGD:1624291
RGD:13792537
RGD:1600115
G Ift122 intraflagellar transport 122 JBrowse link 4 147,756,574 147,826,983 RGD:1624291
G Ift140 intraflagellar transport 140 JBrowse link 10 14,373,668 14,461,509 RGD:1624291
RGD:13792537
G Ift172 intraflagellar transport 172 JBrowse link 6 26,390,686 26,485,459 RGD:13792537
G Ift20 intraflagellar transport 20 JBrowse link 10 65,805,808 65,811,353 RGD:1624291
RGD:13792537
G Ift27 intraflagellar transport 27 JBrowse link 7 119,393,384 119,409,710 RGD:1624291
RGD:1600115
G Ift46 intraflagellar transport 46 JBrowse link 8 49,075,978 49,097,689 RGD:13792537
G Ift52 intraflagellar transport 52 JBrowse link 3 159,388,868 159,413,358 RGD:13792537
G Ift57 intraflagellar transport 57 JBrowse link 11 53,664,638 53,731,779 RGD:13792537
G Ift81 intraflagellar transport 81 JBrowse link 12 39,420,161 39,507,412 RGD:13792537
G Ift88 intraflagellar transport 88 JBrowse link 15 37,690,417 37,786,855 RGD:13792537
G Lca5 lebercilin LCA5 JBrowse link 8 90,926,309 90,984,271 RGD:1624291
RGD:1600115
RGD:13792537
G Lca5l lebercilin LCA5 like JBrowse link 11 36,512,823 36,546,806 RGD:13792537
G Mak male germ cell-associated kinase JBrowse link 17 21,531,651 21,567,742 RGD:13792537
G Nme7 NME/NM23 family member 7 JBrowse link 13 82,607,844 82,737,383 RGD:1624291
G Rabl2 RAB, member of RAS oncogene family like 2 JBrowse link 7 130,556,056 130,564,764 RGD:1624291
G Rpgr retinitis pigmentosa GTPase regulator JBrowse link X 14,271,012 14,331,745 RGD:1624291
G Ssna1 SS nuclear autoantigen 1 JBrowse link 3 2,489,017 2,490,481 RGD:1624291
RGD:1600115
G Traf3ip1 TRAF3 interacting protein 1 JBrowse link 9 98,621,499 98,658,223 RGD:13792537
G Ttc26 tetratricopeptide repeat domain 26 JBrowse link 4 66,090,178 66,147,998 RGD:1624291
RGD:1600115
G Ttc30a1 tetratricopeptide repeat domain 30A1 JBrowse link 3 62,800,932 62,803,373 RGD:13792537
G Ttc30b tetratricopeptide repeat domain 30B JBrowse link 3 62,758,754 62,761,325 RGD:13792537
G Tub tubby bipartite transcription factor JBrowse link 1 173,550,929 173,629,550 RGD:1600115
RGD:1624291
G Wdr34 WD repeat domain 34 JBrowse link 3 8,599,251 8,615,329 RGD:13792537
G Wdr35 WD repeat domain 35 JBrowse link 6 34,094,291 34,152,048 RGD:1624291
intraciliary anterograde transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ick intestinal cell kinase JBrowse link 8 85,413,998 85,473,374 RGD:1600115
RGD:1624291
G Ift122 intraflagellar transport 122 JBrowse link 4 147,756,574 147,826,983 RGD:1624291
RGD:1600115
G Ift52 intraflagellar transport 52 JBrowse link 3 159,388,868 159,413,358 RGD:1624291
RGD:1600115
G Ttc26 tetratricopeptide repeat domain 26 JBrowse link 4 66,090,178 66,147,998 RGD:13792537
intraciliary retrograde transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 JBrowse link 8 5,217,054 5,436,969 RGD:1624291
RGD:13792537
RGD:1600115
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 JBrowse link 6 7,900,962 7,933,795 RGD:13792537
G Dynll1 dynein light chain LC8-type 1 JBrowse link 12 47,074,200 47,076,573 RGD:1624291
G Ick intestinal cell kinase JBrowse link 8 85,413,998 85,473,374 RGD:1600115
RGD:1624291
G Ift122 intraflagellar transport 122 JBrowse link 4 147,756,574 147,826,983 RGD:1624291
RGD:13792537
G Ift140 intraflagellar transport 140 JBrowse link 10 14,373,668 14,461,509 RGD:1624291
RGD:13792537
G Ift43 intraflagellar transport 43 JBrowse link 6 109,939,323 110,016,646 RGD:1624291
RGD:1600115
G Ttc21a tetratricopeptide repeat domain 21A JBrowse link 8 128,622,414 128,657,199 RGD:13792537
G Ttc21b tetratricopeptide repeat domain 21B JBrowse link 3 52,286,794 52,361,060 RGD:1624291
RGD:13792537
G Wdr19 WD repeat domain 19 JBrowse link 14 44,705,012 44,767,120 RGD:1624291
RGD:13792537
G Wdr35 WD repeat domain 35 JBrowse link 6 34,094,291 34,152,048 RGD:1624291
RGD:13792537
intraciliary transport involved in cilium assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cep131 centrosomal protein 131 JBrowse link 10 109,243,240 109,267,636 RGD:1624291
RGD:1600115
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 JBrowse link 6 7,900,962 7,933,795 RGD:1624291
RGD:13792537
RGD:1600115
G Ift74 intraflagellar transport 74 JBrowse link 5 113,579,065 113,682,485 RGD:1624291
RGD:13792537
G Ift81 intraflagellar transport 81 JBrowse link 12 39,420,161 39,507,412 RGD:1600115
RGD:1624291
G Pcm1 pericentriolar material 1 JBrowse link 16 54,040,721 54,137,675 RGD:1624291
RGD:13792537
G Ssx2ip SSX family member 2 interacting protein JBrowse link 2 252,263,323 252,296,049 RGD:1624291
RGD:1600115
G Ttc26 tetratricopeptide repeat domain 26 JBrowse link 4 66,090,178 66,147,998 RGD:13792537
regulation of intraciliary retrograde transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tctex1d2 Tctex1 domain containing 2 JBrowse link 11 71,593,302 71,601,662 RGD:1624291
G Ttc21b tetratricopeptide repeat domain 21B JBrowse link 3 52,286,794 52,361,060 RGD:1600115
RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17926
    localization 5991
      macromolecule localization 2929
        protein localization 2594
          protein-containing complex localization 246
            intraciliary transport 40
              intraciliary anterograde transport + 4
              intraciliary retrograde transport + 12
              intraciliary transport involved in cilium assembly 7
Path 2
Term Annotations click to browse term
  biological_process 17926
    localization 5991
      establishment of localization 4600
        transport 4460
          nitrogen compound transport 2158
            amide transport 1838
              peptide transport 1807
                protein transport 1753
                  intracellular protein transport 936
                    protein transport along microtubule 59
                      intraciliary transport 40
                        intraciliary anterograde transport + 4
                        intraciliary retrograde transport + 12
                        intraciliary transport involved in cilium assembly 7
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.