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ONTOLOGY REPORT - ANNOTATIONS


Term:cell migration involved in gastrulation
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Accession:GO:0042074 term browser browse the term
Definition:The migration of individual cells within the blastocyst to help establish the multi-layered body plan of the organism (gastrulation). For example, the migration of cells from the surface to the interior of the embryo (ingression).


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cell migration involved in gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amot angiomotin ISO MGI:MGI:2656627 (MGI:MGI:2655854|PMID:12676095) RGD PMID:12676095 MGI:MGI:2655854 NCBI chr  X:116,751,231...116,810,238
Ensembl chr  X:116,751,230...116,792,864
JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist ISO MGI:MGI:107405 (MGI:MGI:3042338|PMID:15004567) RGD PMID:15004567 MGI:MGI:3042338 NCBI chr 5:101,003,019...101,006,375
Ensembl chr 5:101,003,023...101,006,375
JBrowse link
G Gpc3 glypican 3 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr  X:139,579,268...139,947,093
Ensembl chr  X:139,579,268...139,916,883
JBrowse link
G Lefty1 left right determination factor 1 ISO MGI:MGI:1201414 (MGI:MGI:3042338|PMID:15004567) RGD PMID:15004567 MGI:MGI:3042338 NCBI chr13:99,212,778...99,217,786
Ensembl chr13:99,214,389...99,217,786
JBrowse link
G Lrp5 LDL receptor related protein 5 ISO MGI:MGI:1298218 (MGI:MGI:3045836|PMID:15142971) RGD PMID:15142971 MGI:MGI:3045836 NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO MGI:MGI:1278315 (MGI:MGI:3045836|PMID:15142971) RGD PMID:15142971 MGI:MGI:3045836 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Megf8 multiple EGF-like-domains 8 IEA
ISO
GO_REF:0000107
(PMID:23063620)
Ensembl
RGD
PMID:23063620 GO_REF:0000107 NCBI chr 1:82,184,671...82,234,045
Ensembl chr 1:82,185,034...82,234,045
JBrowse link
G Mixl1 Mix paired-like homeobox 1 ISO MGI:MGI:2387829 (MGI:MGI:3695524|PMID:17151016) RGD PMID:17151016 MGI:MGI:3695524 NCBI chr13:97,278,258...97,282,299
Ensembl chr13:98,973,041...98,975,426
Ensembl chr13:98,973,041...98,975,426
JBrowse link
G Nckap1 NCK-associated protein 1 ISO MGI:MGI:3578145 (MGI:MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:MGI:3701029 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990
JBrowse link
G Nodal nodal growth differentiation factor ISO (MGI:MGI:3042338|PMID:15004567) RGD PMID:15004567 MGI:MGI:3042338 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A ISO
IEA
MGI:MGI:3608888 (MGI:MGI:4849883|PMID:21069829)
GO_REF:0000107
RGD
Ensembl
PMID:21069829 GO_REF:0000107, MGI:MGI:4849883 NCBI chr 1:213,606,599...213,612,905
Ensembl chr 1:213,606,599...213,612,904
JBrowse link
G Sox17 SRY-box transcription factor 17 ISO MGI:MGI:3717121 (MGI:MGI:4946462|PMID:21146513) RGD PMID:21146513 MGI:MGI:4946462 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 ISO MGI:MGI:2150346 (MGI:MGI:1341493|PMID:10421635) RGD PMID:10421635 MGI:MGI:1341493 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
ingression involved in gastrulation with mouth forming second term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb2 crumbs cell polarity complex component 2 ISO (MGI:MGI:5823085|PMID:27870829) RGD PMID:27870829 MGI:MGI:5823085 NCBI chr 3:22,037,812...22,061,247
Ensembl chr 3:22,038,357...22,058,871
JBrowse link
mesoderm migration involved in gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO MGI:MGI:3822451 (MGI:MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:MGI:3821807 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
JBrowse link
G LOC100912649 uncharacterized LOC100912649 ISS GO_REF:0000024 UniProt GO_REF:0000024
G Tbxt T-box transcription factor T ISO MGI:MGI:1857760 (MGI:MGI:71468|PMID:7720590) RGD PMID:7720590 MGI:MGI:71468 NCBI chr 1:52,887,067...52,900,691
Ensembl chr 1:52,887,067...52,894,832
JBrowse link
planar cell polarity pathway involved in gastrula mediolateral intercalation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt11 Wnt family member 11 ISO MGI:MGI:98958 (MGI:MGI:5634837|PMID:25813538) RGD PMID:25813538 MGI:MGI:5634837 NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756
JBrowse link
G Wnt5a Wnt family member 5A ISO
IEA
MGI:MGI:101948 (MGI:MGI:5634837|PMID:25813538)
GO_REF:0000107
RGD
Ensembl
PMID:25813538 GO_REF:0000107, MGI:MGI:5634837 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20015
    developmental process 6813
      anatomical structure morphogenesis 2873
        embryonic morphogenesis 689
          gastrulation 208
            cell migration involved in gastrulation 19
              cell migration involved in mesendoderm migration + 1
              dorsal convergence 0
              establishment of cell polarity involved in gastrulation cell migration + 0
              ingression involved in gastrulation with mouth forming second 1
              mediolateral intercalation + 2
              mesoderm migration involved in gastrulation 3
Path 2
Term Annotations click to browse term
  biological_process 20015
    developmental process 6813
      anatomical structure development 6257
        multicellular organism development 5736
          embryo development 1303
            embryonic morphogenesis 689
              gastrulation 208
                cell migration involved in gastrulation 19
                  cell migration involved in mesendoderm migration + 1
                  dorsal convergence 0
                  establishment of cell polarity involved in gastrulation cell migration + 0
                  ingression involved in gastrulation with mouth forming second 1
                  mediolateral intercalation + 2
                  mesoderm migration involved in gastrulation 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.