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ONTOLOGY REPORT - ANNOTATIONS


Term:lipoprotein biosynthetic process
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Accession:GO:0042158 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the covalently attached nonprotein group consists of a lipid or lipids.
Synonyms:exact_synonym: lipoprotein anabolism;   lipoprotein biosynthesis;   lipoprotein formation;   lipoprotein synthesis


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lipoprotein biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca1 ATP binding cassette subfamily A member 1 JBrowse link 5 69,857,717 69,983,042 RGD:1358264
RGD:1624291
G Apoa1 apolipoprotein A1 JBrowse link 8 50,525,091 50,526,875 RGD:1624291
G Apob apolipoprotein B JBrowse link 6 33,176,826 33,216,381 RGD:1624291
RGD:1600115
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 JBrowse link 4 155,386,367 155,414,034 RGD:1624291
RGD:1600115
G Apoe apolipoprotein E JBrowse link 1 80,612,894 80,616,820 RGD:1624291
RGD:1600115
G Ins2 insulin 2 JBrowse link 1 215,856,967 215,858,034 RGD:1624291
G Lcat lecithin cholesterol acyltransferase JBrowse link 19 37,913,333 37,916,799 RGD:1624291
RGD:1600115
attachment of GPI anchor to protein term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gpaa1 glycosylphosphatidylinositol anchor attachment 1 JBrowse link 7 117,394,367 117,397,950 RGD:13792537
G Pigk phosphatidylinositol glycan anchor biosynthesis, class K JBrowse link 2 257,911,099 257,997,735 RGD:13792537
G Pigs phosphatidylinositol glycan anchor biosynthesis, class S JBrowse link 10 65,591,638 65,606,175 RGD:1600115
RGD:1624291
G Pigt phosphatidylinositol glycan anchor biosynthesis, class T JBrowse link 3 160,945,556 160,954,738 RGD:13792537
RGD:1624291
G Pigu phosphatidylinositol glycan anchor biosynthesis, class U JBrowse link 3 150,803,096 150,885,597 RGD:1600115
RGD:13792537
RGD:1624291
C-terminal protein lipidation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg12 autophagy related 12 JBrowse link 18 40,721,799 40,732,143 RGD:13792537
G Atg5 autophagy related 5 JBrowse link 20 49,301,783 49,393,147 RGD:13792537
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:13792537
GPI anchor biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cwh43 cell wall biogenesis 43 C-terminal homolog JBrowse link 14 37,315,479 37,361,728 RGD:13792537
G Dpm1 dolichyl-phosphate mannosyltransferase subunit 1, catalytic JBrowse link 3 164,966,637 164,986,180 RGD:1624291
RGD:13792537
G Dpm2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory JBrowse link 3 11,587,941 11,590,528 RGD:69827
RGD:13792537
RGD:1624291
RGD:1600115
G Dpm3 dolichyl-phosphate mannosyltransferase subunit 3, regulatory JBrowse link 2 188,583,664 188,584,179 RGD:1624291
RGD:13792537
G Gpaa1 glycosylphosphatidylinositol anchor attachment 1 JBrowse link 7 117,394,367 117,397,950 RGD:1331364
G LOC100910143 GPI ethanolamine phosphate transferase 2-like JBrowse link 14 1,567,713 1,596,004 RGD:13792537
G LOC103694910 GPI mannosyltransferase 1 RGD:1600115
G Mppe1 metallophosphoesterase 1 JBrowse link 18 62,946,952 62,966,174 RGD:1600115
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 JBrowse link 9 61,066,170 61,134,963 RGD:1303970
G Pgap2 post-GPI attachment to proteins 2 JBrowse link 1 167,309,021 167,335,550 RGD:8553507
RGD:13792537
G Pgap3 post-GPI attachment to proteins phospholipase 3 JBrowse link 10 86,343,058 86,356,146 RGD:13792537
G Piga phosphatidylinositol glycan anchor biosynthesis, class A JBrowse link X 31,786,823 31,799,751 RGD:1624291
RGD:13792537
G Pigb phosphatidylinositol glycan anchor biosynthesis, class B JBrowse link 8 79,691,407 79,715,284 RGD:1624291
RGD:13792537
G Pigc phosphatidylinositol glycan anchor biosynthesis, class C JBrowse link 13 79,886,832 79,889,305 RGD:1600115
RGD:1624291
G Pigf phosphatidylinositol glycan anchor biosynthesis, class F JBrowse link 6 10,565,841 10,593,972 RGD:1624291
RGD:1600115
G Pigg phosphatidylinositol glycan anchor biosynthesis, class G JBrowse link 14 2,410,339 2,438,630 RGD:1624291
RGD:13792537
G Pigh phosphatidylinositol glycan anchor biosynthesis, class H JBrowse link 6 102,258,621 102,272,826 RGD:13792537
G Pigl phosphatidylinositol glycan anchor biosynthesis, class L JBrowse link 10 48,774,018 48,831,848 RGD:729509
RGD:1600115
G Pigm phosphatidylinositol glycan anchor biosynthesis, class M JBrowse link 13 90,759,260 90,762,957 RGD:70624
RGD:1600115
G Pign phosphatidylinositol glycan anchor biosynthesis, class N JBrowse link 13 25,510,593 25,662,943 RGD:13792537
G Pigo phosphatidylinositol glycan anchor biosynthesis, class O JBrowse link 5 58,461,055 58,470,699 RGD:1624291
RGD:13792537
G Pigp phosphatidylinositol glycan anchor biosynthesis, class P JBrowse link 11 34,592,128 34,598,253 RGD:1624291
RGD:1600115
G Pigq phosphatidylinositol glycan anchor biosynthesis, class Q JBrowse link 10 15,289,530 15,305,593 RGD:1624291
RGD:1600115
G Pigu phosphatidylinositol glycan anchor biosynthesis, class U JBrowse link 3 150,803,096 150,885,597 RGD:1624291
G Pigv phosphatidylinositol glycan anchor biosynthesis, class V JBrowse link 5 151,886,132 151,899,024 RGD:1600115
RGD:13792537
RGD:1624291
G Pigw phosphatidylinositol glycan anchor biosynthesis, class W JBrowse link 10 72,194,774 72,198,415 RGD:1600115
RGD:13792537
G Pigx phosphatidylinositol glycan anchor biosynthesis, class X JBrowse link 11 71,938,388 71,954,225 RGD:1600115
G Pigy phosphatidylinositol glycan anchor biosynthesis, class Y JBrowse link 8 23,167,974 23,170,215 RGD:1624291
RGD:13792537
G Pigz phosphatidylinositol glycan anchor biosynthesis, class Z JBrowse link 11 72,930,040 72,936,002 RGD:1624291
RGD:13792537
G Pyurf PIGY upstream reading frame JBrowse link 4 88,584,242 88,587,877 RGD:1624291
RGD:13792537
RGD:1600115
N-terminal peptidyl-glycine N-myristoylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nmt1 N-myristoyltransferase 1 JBrowse link 10 91,126,689 91,160,721 RGD:1624291
RGD:13792537
RGD:1600115
G Nmt2 N-myristoyltransferase 2 JBrowse link 17 78,919,235 78,966,013 RGD:1323839
RGD:13792537
RGD:1624291
N-terminal peptidyl-L-cysteine N-palmitoylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Map6d1 MAP6 domain containing 1 JBrowse link 11 84,321,078 84,327,307 RGD:1624291
RGD:1600115
N-terminal protein myristoylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nmt1 N-myristoyltransferase 1 JBrowse link 10 91,126,689 91,160,721 RGD:1624291
G Nmt2 N-myristoyltransferase 2 JBrowse link 17 78,919,235 78,966,013 RGD:1323839
G Ppm1a protein phosphatase, Mg2+/Mn2+ dependent, 1A JBrowse link 6 94,433,658 94,484,979 RGD:1600115
RGD:1624291
G Ppm1b protein phosphatase, Mg2+/Mn2+ dependent, 1B JBrowse link 6 8,219,385 8,280,127 RGD:1624291
RGD:1600115
negative regulation of N-terminal protein palmitoylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hhatl hedgehog acyltransferase-like JBrowse link 8 130,422,071 130,429,205 RGD:1624291
RGD:13792537
peptidyl-L-cysteine S-palmitoylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clip3 CAP-GLY domain containing linker protein 3 JBrowse link 1 88,750,453 88,766,453 RGD:1624291
RGD:1600115
G Golga7 golgin A7 JBrowse link 16 73,564,172 73,579,389 RGD:1624291
RGD:13792537
RGD:1600115
G Golga7b golgin A7 family, member B JBrowse link 1 261,494,511 261,514,413 RGD:13792537
G LOC108348122 CAP-Gly domain-containing linker protein 3 JBrowse link 1 90,962,921 90,978,946 RGD:1600115
G Zdhhc1 zinc finger, DHHC-type containing 1 JBrowse link 19 37,428,959 37,454,150 RGD:13792537
G Zdhhc11 zinc finger, DHHC-type containing 11 JBrowse link 1 31,906,049 31,936,603 RGD:13792537
G Zdhhc12 zinc finger, DHHC-type containing 12 JBrowse link 3 8,656,397 8,659,102 RGD:13792537
G Zdhhc14 zinc finger, DHHC-type containing 14 JBrowse link 1 46,378,807 46,658,527 RGD:13792537
G Zdhhc15 zinc finger, DHHC-type containing 15 JBrowse link X 75,433,957 75,566,531 RGD:13792537
G Zdhhc18 zinc finger, DHHC-type containing 18 JBrowse link 5 151,829,795 151,856,256 RGD:13792537
G Zdhhc19 zinc finger, DHHC-type containing 19 JBrowse link 11 71,490,346 71,522,959 RGD:13792537
G Zdhhc2 zinc finger DHHC-type palmitoyltransferase 2 JBrowse link 16 54,932,546 55,002,322 RGD:13792537
G Zdhhc20 zinc finger, DHHC-type containing 20 JBrowse link 15 38,108,886 38,165,765 RGD:1624291
RGD:13792537
G Zdhhc21 zinc finger, DHHC-type containing 21 JBrowse link 5 100,924,621 100,983,412 RGD:1624291
RGD:13792537
G Zdhhc22 zinc finger, DHHC-type containing 22 JBrowse link 6 111,008,440 111,015,695 RGD:13792537
G Zdhhc23 zinc finger, DHHC-type containing 23 JBrowse link 11 61,661,119 61,677,547 RGD:13792537
G Zdhhc24 zinc finger, DHHC-type containing 24 JBrowse link 1 220,137,280 220,143,387 RGD:13792537
G Zdhhc25 zinc finger, DHHC-type containing 25 JBrowse link 7 129,595,192 129,596,424 RGD:13792537
G Zdhhc3 zinc finger, DHHC-type containing 3 JBrowse link 8 132,156,216 132,204,484 RGD:13792537
G Zdhhc4 zinc finger, DHHC-type containing 4 JBrowse link 12 13,284,508 13,298,519 RGD:13792537
G Zdhhc6 zinc finger, DHHC-type containing 6 JBrowse link 1 276,291,411 276,309,633 RGD:13792537
G Zdhhc7 zinc finger, DHHC-type containing 7 JBrowse link 19 52,733,161 52,750,307 RGD:1600115
RGD:1624291
RGD:13792537
G Zdhhc9 zinc finger, DHHC-type containing 9 JBrowse link X 135,005,171 135,041,207 RGD:1624291
RGD:13792537
peptidyl-serine octanoylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mboat4 membrane bound O-acyltransferase domain containing 4 JBrowse link 16 61,782,699 61,795,414 RGD:8554475
RGD:1624291
positive regulation of protein lipidation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gba glucosylceramidase beta JBrowse link 2 188,511,781 188,522,602 RGD:1624291
RGD:1600115
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 JBrowse link 13 44,578,208 44,649,876 RGD:1624291
RGD:1600115
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 JBrowse link 13 103,157,806 103,229,010 RGD:1624291
RGD:1600115
G Svip small VCP interacting protein JBrowse link 1 107,368,117 107,373,807 RGD:1624291
RGD:1600115
protein lipidation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca1 ATP binding cassette subfamily A member 1 JBrowse link 5 69,857,717 69,983,042 RGD:1624291
RGD:1600115
G Alox12b arachidonate 12-lipoxygenase, 12R type JBrowse link 10 55,744,646 55,756,524 RGD:1600115
RGD:1624291
G Atg10 autophagy related 10 JBrowse link 2 19,853,546 20,152,918 RGD:1624291
RGD:13792537
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:1624291
G Mttp microsomal triglyceride transfer protein JBrowse link 2 243,366,181 243,407,608 RGD:1624291
RGD:1600115
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 JBrowse link 18 22,964,121 23,047,896 RGD:1624291
RGD:1600115
G Porcn porcupine O-acyltransferase JBrowse link X 15,035,569 15,048,440 RGD:1624291
G Ugcg UDP-glucose ceramide glucosyltransferase JBrowse link 5 76,376,722 76,419,564 RGD:1600115
RGD:1624291
G Wdr45 WD repeat domain 45 JBrowse link X 15,621,249 15,627,159 RGD:13792537
G Wdr45b WD repeat domain 45B JBrowse link 10 110,523,843 110,555,769 RGD:13792537
G Wipi1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 10 97,859,730 97,896,949 RGD:13792537
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 12 13,969,704 13,998,134 RGD:13792537
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg16l1 autophagy related 16-like 1 JBrowse link 9 94,879,876 94,915,231 RGD:1624291
RGD:1600115
G Atg5 autophagy related 5 JBrowse link 20 49,301,783 49,393,147 RGD:1624291
G Irgm immunity-related GTPase M JBrowse link 10 34,213,885 34,221,968 RGD:1624291
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 12 13,969,704 13,998,134 RGD:1624291
RGD:1600115
protein palmitoleylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Porcn porcupine O-acyltransferase JBrowse link X 15,035,569 15,048,440 RGD:1624291
RGD:1600115
protein palmitoylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abhd17a abhydrolase domain containing 17A JBrowse link 7 11,992,543 12,000,978 RGD:1624291
RGD:1600115
G Abhd17b abhydrolase domain containing 17B JBrowse link 1 239,266,140 239,301,133 RGD:1624291
RGD:1600115
G Abhd17c abhydrolase domain containing 17C JBrowse link 1 146,248,505 146,289,465 RGD:1624291
RGD:1600115
G Dbi diazepam binding inhibitor, acyl-CoA binding protein JBrowse link 13 36,147,667 36,156,076 RGD:1624291
G Glul glutamate-ammonia ligase JBrowse link 13 71,331,052 71,340,207 RGD:1600115
RGD:1624291
G Hhat hedgehog acyltransferase JBrowse link 13 111,235,325 111,489,075 RGD:1624291
RGD:13792537
G Selenok selenoprotein K JBrowse link 16 6,035,926 6,044,240 RGD:1600115
RGD:1624291
G Zdhhc1 zinc finger, DHHC-type containing 1 JBrowse link 19 37,428,959 37,454,150 RGD:1624291
G Zdhhc12 zinc finger, DHHC-type containing 12 JBrowse link 3 8,656,397 8,659,102 RGD:1624291
G Zdhhc14 zinc finger, DHHC-type containing 14 JBrowse link 1 46,378,807 46,658,527 RGD:1624291
G Zdhhc15 zinc finger, DHHC-type containing 15 JBrowse link X 75,433,957 75,566,531 RGD:1624291
G Zdhhc16 zinc finger, DHHC-type containing 16 JBrowse link 1 261,179,971 261,191,374 RGD:1624291
RGD:13792537
G Zdhhc17 zinc finger, DHHC-type containing 17 JBrowse link 7 53,651,529 53,715,007 RGD:1624291
RGD:1600115
G Zdhhc18 zinc finger, DHHC-type containing 18 JBrowse link 5 151,829,795 151,856,256 RGD:1600115
RGD:1624291
G Zdhhc2 zinc finger DHHC-type palmitoyltransferase 2 JBrowse link 16 54,932,546 55,002,322 RGD:1624291
G Zdhhc20 zinc finger, DHHC-type containing 20 JBrowse link 15 38,108,886 38,165,765 RGD:1624291
G Zdhhc21 zinc finger, DHHC-type containing 21 JBrowse link 5 100,924,621 100,983,412 RGD:1624291
G Zdhhc22 zinc finger, DHHC-type containing 22 JBrowse link 6 111,008,440 111,015,695 RGD:1624291
G Zdhhc23 zinc finger, DHHC-type containing 23 JBrowse link 11 61,661,119 61,677,547 RGD:1624291
G Zdhhc3 zinc finger, DHHC-type containing 3 JBrowse link 8 132,156,216 132,204,484 RGD:1624291
G Zdhhc5 zinc finger, DHHC-type containing 5 JBrowse link 3 72,090,526 72,118,406 RGD:1624291
RGD:13792537
G Zdhhc6 zinc finger, DHHC-type containing 6 JBrowse link 1 276,291,411 276,309,633 RGD:1624291
G Zdhhc7 zinc finger, DHHC-type containing 7 JBrowse link 19 52,733,161 52,750,307 RGD:1624291
RGD:1600115
G Zdhhc8 zinc finger, DHHC-type containing 8 JBrowse link 11 86,903,122 86,917,261 RGD:1624291
RGD:13792537
G Zdhhc9 zinc finger, DHHC-type containing 9 JBrowse link X 135,005,171 135,041,207 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18008
    cellular process 16139
      cellular metabolic process 9809
        cellular macromolecule metabolic process 7511
          cellular macromolecule biosynthetic process 4277
            lipoprotein biosynthetic process 100
              lipoprotein biosynthetic process via N-acyl transfer 0
              lipoprotein biosynthetic process via diacylglyceryl transfer 0
              lipoprotein biosynthetic process via signal peptide cleavage 0
              protein lipidation + 94
Path 2
Term Annotations click to browse term
  biological_process 18008
    metabolic process 10729
      biosynthetic process 5405
        organic substance biosynthetic process 5292
          macromolecule biosynthetic process 4406
            cellular macromolecule biosynthetic process 4277
              lipoprotein biosynthetic process 100
                lipoprotein biosynthetic process via N-acyl transfer 0
                lipoprotein biosynthetic process via diacylglyceryl transfer 0
                lipoprotein biosynthetic process via signal peptide cleavage 0
                protein lipidation + 94
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.