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ONTOLOGY REPORT - ANNOTATIONS


Term:fat-soluble vitamin biosynthetic process
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Accession:GO:0042362 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of any of a diverse group of vitamins that are soluble in organic solvents and relatively insoluble in water.
Synonyms:exact_synonym: fat-soluble vitamin anabolism;   fat-soluble vitamin biosynthesis;   fat-soluble vitamin formation;   fat-soluble vitamin synthesis


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calcitriol biosynthetic process from calciol term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp27a1 cytochrome P450, family 27, subfamily a, polypeptide 1 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 1:74,713,148...74,737,897
Ensembl chr 1:74,713,574...74,737,892
JBrowse link
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 ISO
IBA
IDA
(MGI:MGI:6201960|PMID:21873635)
(MGI:MGI:3590419|PMID:15972816)
MGI
GO_Central
UniProt
PMID:15972816, PMID:21873635 GO_REF:0000096, MGI:MGI:3590419, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr10:127,048,246...127,054,884
Ensembl chr10:127,048,250...127,053,006
JBrowse link
G Cyp2r1 cytochrome P450, family 2, subfamily r, polypeptide 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:114,550,123...114,563,048
Ensembl chr 7:114,549,682...114,562,972
JBrowse link
negative regulation of calcidiol 1-monooxygenase activity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr10:127,048,246...127,054,884
Ensembl chr10:127,048,250...127,053,006
JBrowse link
G Gfi1 growth factor independent 1 transcription repressor ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 5:107,716,655...107,725,805
Ensembl chr 5:107,716,657...107,726,036
JBrowse link
G Nfkb1 nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 3:135,584,655...135,691,969
Ensembl chr 3:135,584,655...135,691,547
JBrowse link
negative regulation of vitamin D biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snai1 snail family zinc finger 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 2:167,538,195...167,542,814
Ensembl chr 2:167,538,195...167,542,814
JBrowse link
G Snai2 snail family zinc finger 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr16:14,705,852...14,709,395
Ensembl chr16:14,705,852...14,709,385
JBrowse link
positive regulation of calcidiol 1-monooxygenase activity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ifng interferon gamma ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr10:118,441,046...118,445,894
Ensembl chr10:118,441,046...118,445,892
JBrowse link
G Il1b interleukin 1 beta ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 2:129,364,569...129,371,164
Ensembl chr 2:129,364,570...129,371,139
JBrowse link
G Tnf tumor necrosis factor ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr17:35,199,367...35,202,007
Ensembl chr17:35,199,381...35,202,007
JBrowse link
positive regulation of vitamin D biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ifng interferon gamma ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr10:118,441,046...118,445,894
Ensembl chr10:118,441,046...118,445,892
JBrowse link
G Tnf tumor necrosis factor ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr17:35,199,367...35,202,007
Ensembl chr17:35,199,381...35,202,007
JBrowse link
regulation of calcidiol 1-monooxygenase activity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vdr vitamin D (1,25-dihydroxyvitamin D3) receptor IMP (MGI:MGI:1097206|PMID:9295274) BHF-UCL PMID:9295274 MGI:MGI:1097206 NCBI chr15:97,854,427...97,908,296
Ensembl chr15:97,854,425...97,910,630
JBrowse link
vitamin E biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pltp phospholipid transfer protein IMP (MGI:MGI:3622506|PMID:16467369) MGI PMID:16467369 MGI:MGI:3622506 NCBI chr 2:164,839,518...164,857,708
Ensembl chr 2:164,839,518...164,857,711
JBrowse link
vitamin K biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ubiad1 UbiA prenyltransferase domain containing 1 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 4:148,434,495...148,444,760
Ensembl chr 4:148,434,495...148,444,771
JBrowse link
G Vkorc1 vitamin K epoxide reductase complex, subunit 1 ISO (MGI:MGI:2678901|PMID:12072400) MGI PMID:12072400 MGI:MGI:2678901 NCBI chr 7:127,893,063...127,895,658
Ensembl chr 7:127,886,227...127,895,454
Ensembl chr 7:127,886,227...127,895,454
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23369
    metabolic process 11273
      small molecule metabolic process 1760
        vitamin metabolic process 75
          fat-soluble vitamin metabolic process 37
            fat-soluble vitamin biosynthetic process 14
              vitamin A biosynthetic process 0
              vitamin D biosynthetic process + 11
              vitamin E biosynthetic process + 1
              vitamin K biosynthetic process 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.