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ONTOLOGY REPORT - ANNOTATIONS


Term:water-soluble vitamin biosynthetic process
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Accession:GO:0042364 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of any of a diverse group of vitamins that are soluble in water.
Synonyms:exact_synonym: water-soluble vitamin anabolism;   water-soluble vitamin biosynthesis;   water-soluble vitamin formation;   water-soluble vitamin synthesis


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L-ascorbic acid biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1a1 aldo-keto reductase family 1 member A1 IMP
ISO
PMID:22820017
(MGI:MGI:3588122|PMID:15769935), (MGI:MGI:4834110|PMID:20410296)
RGD PMID:15769935, PMID:20410296, PMID:22820017 MGI:MGI:3588122, MGI:MGI:4834110, RGD:13825440 NCBI chr 5:135,482,068...135,498,693
Ensembl chr 5:135,482,068...135,498,822
JBrowse link
G Gsto1 glutathione S-transferase omega 1 IMP RGD PMID:9786866 RGD:70644 NCBI chr 1:267,607,437...267,617,387
Ensembl chr 1:267,607,418...267,617,387
JBrowse link
G Gulo gulonolactone (L-) oxidase IEA
ISS
GO_REF:0000107
GO_REF:0000024
Ensembl
UniProt
GO_REF:0000024, GO_REF:0000107 NCBI chr15:42,671,206...42,693,711
Ensembl chr15:42,671,203...42,693,694
JBrowse link
G Rgn regucalcin ISO
IBA
ISS
(MGI:MGI:5486063|PMID:23349732)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:23349732, PMID:21873635 GO_REF:0000024, MGI:MGI:5486063, RGD:13792537 NCBI chr  X:1,833,484...1,848,904
Ensembl chr  X:1,833,492...1,848,904
JBrowse link
pyridoxal 5'-phosphate salvage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr20:10,930,651...10,952,194
Ensembl chr20:10,930,518...10,952,391
JBrowse link
G RGD1566085 similar to pyridoxal (pyridoxine, vitamin B6) kinase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:10,883,952...10,912,870
Ensembl chr20:10,889,573...10,912,769
JBrowse link
pyridoxal phosphate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase IDA RGD PMID:2988502 RGD:2303018 NCBI chr20:10,930,651...10,952,194
Ensembl chr20:10,930,518...10,952,391
JBrowse link
G Pnpo pyridoxamine 5'-phosphate oxidase ISO
IBA
(PMID:12824491)
PMID:21873635
RGD PMID:12824491, PMID:21873635 RGD:13792537 NCBI chr10:84,874,926...84,881,190
Ensembl chr10:84,874,927...84,881,190
JBrowse link
pyridoxine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpo pyridoxamine 5'-phosphate oxidase IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:84,874,926...84,881,190
Ensembl chr10:84,874,927...84,881,190
JBrowse link
riboflavin biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rfk riboflavin kinase IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:236,494,221...236,501,733
Ensembl chr 1:236,494,221...236,501,733
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      small molecule metabolic process 1870
        vitamin metabolic process 81
          water-soluble vitamin metabolic process 37
            water-soluble vitamin biosynthetic process 8
              L-ascorbic acid biosynthetic process + 4
              biotin biosynthetic process 0
              cobalamin biosynthetic process + 0
              folic acid biosynthetic process 0
              pantothenate biosynthetic process 0
              riboflavin biosynthetic process 1
              thiamine-containing compound biosynthetic process + 0
              vitamin B6 biosynthetic process + 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.