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ONTOLOGY REPORT - ANNOTATIONS


Term:indole-containing compound biosynthetic process
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Accession:GO:0042435 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of compounds that contain an indole (2,3-benzopyrrole) skeleton.
Synonyms:exact_synonym: indole derivative biosynthesis;   indole derivative biosynthetic process;   indole-containing compound anabolism;   indole-containing compound biosynthesis;   indole-containing compound formation;   indole-containing compound synthesis


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melatonin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aanat aralkylamine N-acetyltransferase JBrowse link 10 105,568,091 105,572,407 RGD:67926
RGD:13792537
RGD:1600115
RGD:1624291
G Asmt acetylserotonin O-methyltransferase JBrowse link 12 18,521,383 18,527,036 RGD:1299464
RGD:13792537
RGD:1624291
RGD:1600115
RGD:1359073
serotonin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddc dopa decarboxylase JBrowse link 14 91,905,919 91,996,816 RGD:5129182
G Tph2 tryptophan hydroxylase 2 JBrowse link 7 58,042,279 58,149,220 RGD:1600115
serotonin biosynthetic process from tryptophan term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 JBrowse link 7 123,599,264 123,608,436 RGD:11353778
G Tph1 tryptophan hydroxylase 1 JBrowse link 1 102,669,868 102,699,442 RGD:625621

Term paths to the root
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  biological_process 18008
    metabolic process 10729
      biosynthetic process 5405
        cellular biosynthetic process 5233
          heterocycle biosynthetic process 3590
            indole-containing compound biosynthetic process 6
              brevianamide F biosynthetic process + 0
              fumiquinazoline F biosynthetic process 0
              indolalkylamine biosynthetic process + 0
              indole biosynthetic process 0
              indole glucosinolate biosynthetic process 0
              indole phytoalexin biosynthetic process + 0
              indoleacetic acid biosynthetic process + 0
              indoleacetic acid conjugate biosynthetic process + 0
              melatonin biosynthetic process 2
              serotonin biosynthetic process + 4
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.