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ONTOLOGY REPORT - ANNOTATIONS


Term:indole-containing compound biosynthetic process
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Accession:GO:0042435 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of compounds that contain an indole (2,3-benzopyrrole) skeleton.
Synonyms:exact_synonym: indole derivative biosynthesis;   indole derivative biosynthetic process;   indole-containing compound anabolism;   indole-containing compound biosynthesis;   indole-containing compound formation;   indole-containing compound synthesis


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melatonin biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aanat aralkylamine N-acetyltransferase TAS
IBA
ISS
ISO
IEA
PMID:21873635
GO_REF:0000024
(PMID:11313340)
GO_REF:0000041
UniProt
RGD
PMID:11313340, PMID:9054387, PMID:21873635 GO_REF:0000024, GO_REF:0000041, RGD:67926, RGD:13792537 NCBI chr10:105,568,091...105,572,407
Ensembl chr10:105,568,091...105,572,403
JBrowse link
G Asmt acetylserotonin O-methyltransferase IDA
IBA
ISO
IEA
PMID:21873635
(MGI:MGI:4442290|PMID:20308563), (MGI:MGI:56619|PMID:3941912)
(PMID:22775292)
GO_REF:0000041
RGD
UniProt
PMID:3941912, PMID:20308563, PMID:22775292, PMID:8930356, PMID:21873635, PMID:12198599 GO_REF:0000041, MGI:MGI:4442290, MGI:MGI:56619, RGD:1299464, RGD:13792537, RGD:1359073 NCBI chr12:18,521,383...18,527,036
Ensembl chr12:18,521,401...18,526,250
JBrowse link
serotonin biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddc dopa decarboxylase IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:10027744, PMID:21873635 RGD:5129182, RGD:13792537 NCBI chr14:91,905,919...91,996,816
Ensembl chr14:91,905,919...91,996,774
JBrowse link
G Tph2 tryptophan hydroxylase 2 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:58,042,279...58,149,220
Ensembl chr 7:58,042,281...58,149,061
JBrowse link
serotonin biosynthetic process from tryptophan term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 IDA RGD PMID:23098818 RGD:11353778 NCBI chr 7:123,599,264...123,608,436
Ensembl chr 7:123,599,266...123,608,436
JBrowse link
G Tph1 tryptophan hydroxylase 1 TAS RGD PMID:12153488 RGD:625621 NCBI chr 1:102,669,868...102,699,442
Ensembl chr 1:102,669,868...102,699,442
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    metabolic process 12271
      biosynthetic process 6222
        cellular biosynthetic process 6060
          heterocycle biosynthetic process 3959
            indole-containing compound biosynthetic process 6
              brevianamide F biosynthetic process + 0
              fumiquinazoline F biosynthetic process 0
              indolalkylamine biosynthetic process + 0
              indole biosynthetic process 0
              indole glucosinolate biosynthetic process 0
              indole phytoalexin biosynthetic process + 0
              indoleacetic acid biosynthetic process + 0
              indoleacetic acid conjugate biosynthetic process + 0
              melatonin biosynthetic process 2
              psilocybin biosynthetic process 0
              serotonin biosynthetic process + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.