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ONTOLOGY REPORT - ANNOTATIONS


Term:neuron maturation
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Accession:GO:0042551 term browser browse the term
Definition:A developmental process, independent of morphogenetic (shape) change, that is required for a neuron to attain its fully functional state.


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neuron maturation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6b actin-like 6B ISO
ISS
(PMID:31031012)
GO_REF:0000024
RGD
UniProt
PMID:31031012 GO_REF:0000024 NCBI chr12:22,194,595...22,211,107
Ensembl chr12:22,194,618...22,211,080
JBrowse link
G B4galt5 beta-1,4-galactosyltransferase 5 ISO (MGI:6196231|PMID:30114188) RGD PMID:30114188 MGI:6196231 NCBI chr 3:164,039,731...164,055,561
Ensembl chr 3:164,039,731...164,095,878
JBrowse link
G B4galt6 beta-1,4-galactosyltransferase 6 ISS
ISO
IEA
GO_REF:0000024
(MGI:6196231|PMID:30114188)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:30114188 GO_REF:0000024, GO_REF:0000107, MGI:6196231 NCBI chr18:15,462,913...15,525,584
Ensembl chr18:15,462,913...15,525,579
JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C ISO MGI:1933757 (MGI:3029599|PMID:14671317) RGD PMID:14671317 MGI:3029599 NCBI chr 1:216,661,067...216,663,791
Ensembl chr 1:216,661,080...216,663,721
JBrowse link
G Fev FEV transcription factor, ETS family member ISO MGI:2449922 (MGI:4836772|PMID:20818386) RGD PMID:20818386 MGI:4836772 NCBI chr 9:82,142,981...82,146,855
Ensembl chr 9:82,142,981...82,146,874
JBrowse link
G Irx5 iroquois homeobox 5 ISO MGI:1890816 (MGI:3776945|PMID:18322081) RGD PMID:18322081 MGI:3776945 NCBI chr19:16,415,813...16,421,088
Ensembl chr19:16,415,636...16,421,191
JBrowse link
G Kdm1a lysine demethylase 1A IEP RGD PMID:20164337 RGD:9588288 NCBI chr 5:154,909,003...154,965,171
Ensembl chr 5:154,909,003...154,965,171
JBrowse link
G Lgi4 leucine-rich repeat LGI family, member 4 ISO MGI:1856594 (MGI:3052391|PMID:15282162) RGD PMID:15282162 MGI:3052391 NCBI chr 1:89,491,588...89,502,939
Ensembl chr 1:89,491,654...89,502,974
JBrowse link
G Mecp2 methyl CpG binding protein 2 ISO MGI:2158354|MGI:2183727 (MGI:3512652|PMID:15519245), (MGI:3789859|PMID:17532643), (MGI:3794248|PMID:18295506) RGD PMID:15519245, PMID:17532643, PMID:18295506 MGI:3512652, MGI:3789859, MGI:3794248 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 IEA
ISO
GO_REF:0000107
MGI:2157566 (MGI:1350702|PMID:10585298)
Ensembl
RGD
PMID:10585298 GO_REF:0000107, MGI:1350702 NCBI chr 3:43,111,258...43,128,391
Ensembl chr 3:43,111,240...43,119,159
JBrowse link
G Nrxn1 neurexin 1 ISO (MGI:5284797|PMID:15620359) RGD PMID:15620359 MGI:5284797 NCBI chr 6:13,886,757...15,191,660
Ensembl chr 6:13,886,740...15,191,660
JBrowse link
G Rb1 RB transcriptional corepressor 1 IEA
ISO
GO_REF:0000107
MGI:1857339 (MGI:3664376|PMID:7958874)
Ensembl
RGD
PMID:7958874 GO_REF:0000107, MGI:3664376 NCBI chr15:55,081,582...55,209,060
Ensembl chr15:55,083,140...55,209,342
JBrowse link
G Ret ret proto-oncogene ISO MGI:2136894 (MGI:3052425|PMID:15233745) RGD PMID:15233745 MGI:3052425 NCBI chr 4:150,202,170...150,249,196
Ensembl chr 4:150,202,058...150,244,372
JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:45,726,192...45,884,644
Ensembl chr12:45,727,112...45,882,548
JBrowse link
G Vsx1 visual system homeobox 1 ISO MGI:1859086 (MGI:3776945|PMID:18322081) RGD PMID:18322081 MGI:3776945 NCBI chr 3:146,484,235...146,494,757
Ensembl chr 3:146,484,238...146,491,837
JBrowse link
clustering of voltage-gated calcium channels term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap5 A-kinase anchoring protein 5 ISO (MGI:6378147|PMID:27693258) RGD PMID:27693258 MGI:6378147 NCBI chr 6:99,356,509...99,361,909
Ensembl chr 6:99,356,509...99,361,909
JBrowse link
clustering of voltage-gated potassium channels term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap5 A-kinase anchoring protein 5 ISO (MGI:6378147|PMID:27693258) RGD PMID:27693258 MGI:6378147 NCBI chr 6:99,356,509...99,361,909
Ensembl chr 6:99,356,509...99,361,909
JBrowse link
G Cntn2 contactin 2 IEA
ISO
GO_REF:0000107
(MGI:2675531|PMID:12963709)
Ensembl
RGD
PMID:12963709 GO_REF:0000107, MGI:2675531 NCBI chr13:49,280,913...49,314,061
Ensembl chr13:49,285,310...49,313,940
JBrowse link
G Cntnap2 contactin associated protein 2 ISO (MGI:2675531|PMID:12963709) RGD PMID:12963709 MGI:2675531 NCBI chr 4:74,700,539...77,025,463 JBrowse link
G Kcnip2 potassium voltage-gated channel interacting protein 2 IDA
ISO
IMP
(PMID:11287421) RGD PMID:11287421, PMID:12967630, PMID:12006572 RGD:7207200, RGD:625553 NCBI chr 1:265,549,610...265,573,393
Ensembl chr 1:265,549,593...265,573,409
JBrowse link
G Kcnip2_v1 potassium voltage-gated channel interacting protein 2, variant 1 IMP RGD PMID:12006572 RGD:625553
G Kcnip2_v2 potassium voltage-gated channel interacting protein 2, variant 2 IMP RGD PMID:12006572 RGD:625553
G Kcnip2_v3 potassium voltage-gated channel interacting protein 2, variant 3 IMP RGD PMID:12006572 RGD:625553
clustering of voltage-gated sodium channels term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ank3 ankyrin 3 IMP RGD PMID:17709431 RGD:14392774 NCBI chr20:19,948,767...20,480,628
Ensembl chr20:20,105,047...20,480,623
JBrowse link
G Gldn gliomedin IEA
ISO
GO_REF:0000107
MGI:4840020 (MGI:4839704|PMID:20188654)
Ensembl
RGD
PMID:20188654 GO_REF:0000107, MGI:4839704 NCBI chr 8:58,870,516...58,914,605
Ensembl chr 8:58,870,516...58,914,603
JBrowse link
G Myoc myocilin IEA
ISO
ISS
GO_REF:0000107
(MGI:5527213|PMID:23897819)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:23897819 GO_REF:0000024, GO_REF:0000107, MGI:5527213 NCBI chr13:80,517,531...80,527,928
Ensembl chr13:80,517,536...80,527,928
JBrowse link
G Nfasc neurofascin ISO MGI:3808598 (MGI:4839704|PMID:20188654) RGD PMID:20188654 MGI:4839704 NCBI chr13:49,335,407...49,522,474
Ensembl chr13:49,335,408...49,522,415
JBrowse link
G Nrcam neuronal cell adhesion molecule ISO
IEA
ISS
(PMID:14602817)
MGI:2387976 (MGI:4839704|PMID:20188654)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:14602817, PMID:20188654 GO_REF:0000024, GO_REF:0000107, MGI:4839704 NCBI chr 6:64,297,843...64,867,408
Ensembl chr 6:64,297,888...64,864,996
JBrowse link
G Sclt1 sodium channel and clathrin linker 1 IMP RGD PMID:15797711 RGD:1359053 NCBI chr 2:128,523,376...128,675,668
Ensembl chr 2:128,523,636...128,675,408
JBrowse link
G Sptbn4 spectrin, beta, non-erythrocytic 4 ISO MGI:3710201 (MGI:2181223|PMID:11807096), (MGI:3708238|PMID:17197442) RGD PMID:11807096, PMID:17197442 MGI:2181223, MGI:3708238 NCBI chr 1:84,168,494...84,254,679
Ensembl chr 1:84,168,495...84,254,645
JBrowse link
negative regulation of neuron maturation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednrb endothelin receptor type B ISO (MGI:1330409|PMID:10021336) RGD PMID:10021336 MGI:1330409 NCBI chr15:88,004,775...88,036,354
Ensembl chr15:88,006,977...88,036,354
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO MGI:102539|MGI:1934030|MGI:97321 (MGI:5440114|PMID:23015435) RGD PMID:23015435 MGI:5440114 NCBI chr11:65,060,884...65,208,842
Ensembl chr11:65,066,235...65,209,268
JBrowse link
G Mir133b microRNA 133b ISO (MGI:3723568|PMID:17656374) RGD PMID:17656374 MGI:3723568 NCBI chr 9:26,795,649...26,795,732
Ensembl chr 9:26,795,649...26,795,732
JBrowse link
G Tbx6 T-box transcription factor 6 ISO MGI:1934030|MGI:2152453|MGI:97321 (MGI:5440114|PMID:23015435) RGD PMID:23015435 MGI:5440114 NCBI chr 1:198,214,797...198,218,706
Ensembl chr 1:198,214,797...198,218,706
JBrowse link
negative regulation of neuron remodeling term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11a BAF chromatin remodeling complex subunit BCL11A IMP RGD PMID:19616629 RGD:11100018 NCBI chr14:108,826,717...108,921,197
Ensembl chr14:108,826,831...108,921,669
JBrowse link
neuron remodeling term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase ISO MGI:2153719 (MGI:4361750|PMID:19805386) RGD PMID:19805386 MGI:4361750 NCBI chr13:74,154,533...74,333,244
Ensembl chr13:74,154,835...74,333,244
JBrowse link
G Adgrb3 adhesion G protein-coupled receptor B3 IBA
ISO
PMID:21873635
MGI:1344400 (MGI:5629603|PMID:25611509)
RGD PMID:25611509, PMID:21873635 MGI:5629603, RGD:13792537 NCBI chr 9:31,280,623...32,022,535
Ensembl chr 9:31,281,316...32,019,205
JBrowse link
G Anks1a ankyrin repeat and sterile alpha motif domain containing 1A ISO (MGI:3768579|PMID:17875921) RGD PMID:17875921 MGI:3768579 NCBI chr20:7,484,550...7,636,498
Ensembl chr20:7,484,550...7,636,497
JBrowse link
G App amyloid beta precursor protein ISS
ISO
GO_REF:0000024
MGI:2136847 (MGI:1334893|PMID:10219973)
UniProt
RGD
PMID:10219973 GO_REF:0000024, MGI:1334893 NCBI chr11:24,425,013...24,641,872
Ensembl chr11:24,425,005...24,641,858
JBrowse link
G C1qa complement C1q A chain ISO (MGI:3801262|PMID:18083105) RGD PMID:18083105 MGI:3801262 NCBI chr 5:155,261,254...155,264,101
Ensembl chr 5:155,261,250...155,264,143
JBrowse link
G C1ql1 complement C1q like 1 ISO MGI:5708580 (MGI:5629603|PMID:25611509) RGD PMID:25611509 MGI:5629603 NCBI chr10:91,040,005...91,047,177
Ensembl chr10:91,040,005...91,047,177
JBrowse link
G C3 complement C3 IEA
ISO
GO_REF:0000107
(MGI:3801262|PMID:18083105)
Ensembl
RGD
PMID:18083105 GO_REF:0000107, MGI:3801262 NCBI chr 9:9,721,137...9,747,084
Ensembl chr 9:9,721,105...9,747,167
JBrowse link
G Cspg4 chondroitin sulfate proteoglycan 4 IDA RGD PMID:12526031 RGD:632591 NCBI chr 8:61,532,465...61,567,510
Ensembl chr 8:61,532,465...61,567,510
JBrowse link
G Epha8 Eph receptor A8 IEA
ISO
ISS
GO_REF:0000107
(MGI:3768579|PMID:17875921)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:17875921 GO_REF:0000024, GO_REF:0000107, MGI:3768579 NCBI chr 5:155,293,731...155,321,016
Ensembl chr 5:155,295,314...155,316,495
JBrowse link
G Farp2 FERM, ARH/RhoGEF and pleckstrin domain protein 2 ISO (PMID:12351724) RGD PMID:12351724 NCBI chr 9:100,660,366...100,767,940
Ensembl chr 9:100,660,394...100,767,940
JBrowse link
G Gnaq G protein subunit alpha q IEA
ISO
GO_REF:0000107
MGI:2151661 (MGI:1100605|PMID:9391157)
Ensembl
RGD
PMID:9391157 GO_REF:0000107, MGI:1100605 NCBI chr 1:233,382,778...233,622,584
Ensembl chr 1:233,382,708...233,622,786
JBrowse link
G Ntn4 netrin 4 ISO (MGI:1913156|PMID:11038171) RGD PMID:11038171 MGI:1913156 NCBI chr 7:34,533,543...34,649,330
Ensembl chr 7:34,533,543...34,649,481
JBrowse link
G Pdgfb platelet derived growth factor subunit B ISO MGI:2670574 (MGI:5607451|PMID:25224828) RGD PMID:25224828 MGI:5607451 NCBI chr 7:121,215,458...121,233,092
Ensembl chr 7:121,214,628...121,232,741
JBrowse link
G Rnd1 Rho family GTPase 1 ISO (PMID:11095956) RGD PMID:11095956 NCBI chr 7:140,349,138...140,356,209
Ensembl chr 7:140,349,138...140,356,209
JBrowse link
G Scarf1 scavenger receptor class F, member 1 ISO (MGI:3772611|PMID:18160648) RGD PMID:18160648 MGI:3772611 NCBI chr10:63,662,967...63,683,916
Ensembl chr10:63,662,986...63,670,639
JBrowse link
neuronal ion channel clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlg2 discs large MAGUK scaffold protein 2 IMP RGD PMID:8755482 RGD:728660 NCBI chr 1:154,916,274...157,274,077
Ensembl chr 1:156,552,328...157,269,747
JBrowse link
G Dlg4 discs large MAGUK scaffold protein 4 TAS PMID:11152698 UniProt PMID:11152698 RGD:8554109 NCBI chr10:56,625,845...56,655,543
Ensembl chr10:56,627,411...56,653,599
JBrowse link
G Nlgn1 neuroligin 1 TAS PMID:9278515 UniProt PMID:9278515 RGD:8554758 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Pmp22 peripheral myelin protein 22 ISO MGI:1856217 (MGI:3577677|PMID:15703401) RGD PMID:15703401 MGI:3577677 NCBI chr10:49,538,588...49,568,583
Ensembl chr10:49,538,588...49,568,583
JBrowse link
positive regulation of neuron maturation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak1 adenylate kinase 1 IEP RGD PMID:9920788 RGD:632499 NCBI chr 3:11,652,143...11,659,135 JBrowse link
G Bcl2 BCL2, apoptosis regulator IEA
ISO
GO_REF:0000107
MGI:2156165 (MGI:1203785|PMID:9547242)
Ensembl
RGD
PMID:9547242 GO_REF:0000107, MGI:1203785 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Grip2 glutamate receptor interacting protein 2 IMP PMID:20083202 UniProt PMID:20083202 RGD:4107359 NCBI chr 4:123,585,184...123,636,040
Ensembl chr 4:123,586,231...123,636,040
JBrowse link
G Map3k13 mitogen-activated protein kinase kinase kinase 13 ISO (MGI:5810221|PMID:27511108) RGD PMID:27511108 MGI:5810221 NCBI chr11:82,744,391...82,938,357
Ensembl chr11:82,745,735...82,938,357
JBrowse link
G Mtor mechanistic target of rapamycin kinase IMP RGD PMID:24118019 RGD:10041036 NCBI chr 5:165,263,813...165,373,967
Ensembl chr 5:165,263,800...165,373,967
JBrowse link
G Ngf nerve growth factor ISO MGI:102539|MGI:1861437|MGI:1934030 (MGI:5440114|PMID:23015435) RGD PMID:23015435 MGI:5440114 NCBI chr 2:204,886,158...204,939,523
Ensembl chr 2:204,886,202...204,940,453
JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase IMP RGD PMID:23543485 RGD:7800725 NCBI chr11:74,717,600...74,793,902
Ensembl chr11:74,720,254...74,793,803
JBrowse link
G Ret ret proto-oncogene IMP RGD PMID:18501516 RGD:2324932 NCBI chr 4:150,202,170...150,249,196
Ensembl chr 4:150,202,058...150,244,372
JBrowse link
regulation of neuron maturation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrk2 leucine-rich repeat kinase 2 ISO (PMID:21168496) RGD PMID:21168496 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584
JBrowse link
G Mir132 microRNA 132 ISO MGI:2676888 (MGI:4848233|PMID:21059906) RGD PMID:21059906 MGI:4848233 NCBI chr10:62,014,995...62,015,095
Ensembl chr10:62,014,995...62,015,095
JBrowse link
G Mir212 microRNA 212 ISO MGI:2676817 (MGI:4848233|PMID:21059906) RGD PMID:21059906 MGI:4848233 NCBI chr10:62,014,702...62,014,812
Ensembl chr10:62,014,702...62,014,812
JBrowse link
G Rac1 Rac family small GTPase 1 ISO MGI:2180784 (MGI:5569596|PMID:23258346) RGD PMID:23258346 MGI:5569596 NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873
JBrowse link
G Rac3 Rac family small GTPase 3 ISO MGI:97845 (MGI:5569596|PMID:23258346) RGD PMID:23258346 MGI:5569596 NCBI chr10:109,903,920...109,906,596
Ensembl chr10:109,904,259...109,906,232
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      cellular developmental process 4457
        cell maturation 226
          neuron maturation 65
            negative regulation of neuron maturation + 5
            neuron remodeling + 16
            neuronal ion channel clustering + 18
            positive regulation of neuron maturation + 8
            regulation of neuron maturation + 18
Path 2
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        multicellular organism development 5743
          system development 5279
            nervous system development 2719
              neurogenesis 1936
                generation of neurons 1780
                  neuron differentiation 1614
                    neuron development 1323
                      neuron maturation 65
                        negative regulation of neuron maturation + 5
                        neuron remodeling + 16
                        neuronal ion channel clustering + 18
                        positive regulation of neuron maturation + 8
                        regulation of neuron maturation + 18
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.