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ONTOLOGY REPORT - ANNOTATIONS


Term:embryonic digit morphogenesis
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Accession:GO:0042733 term browser browse the term
Definition:The process, occurring in the embryo, by which the anatomical structures of the digit are generated and organized. A digit is one of the terminal divisions of an appendage, such as a finger or toe.


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embryonic digit morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALX4 ALX homeobox 4 JBrowse link 11 44,260,440 44,310,139 RGD:2290271
G B9D1 B9 domain containing 1 JBrowse link 17 19,334,695 19,377,913 RGD:2290271
G BMP4 bone morphogenetic protein 4 JBrowse link 14 53,949,736 53,956,891 RGD:2290271
G BMPR1A bone morphogenetic protein receptor type 1A JBrowse link 10 86,755,786 86,927,969 RGD:2290271
G BPNT2 3'(2'), 5'-bisphosphate nucleotidase 2 JBrowse link 8 56,957,931 56,993,874 RGD:2290271
G C2CD3 C2 domain containing 3 centriole elongation regulator JBrowse link 11 74,012,578 74,171,210 RGD:2290271
G CHST11 carbohydrate sulfotransferase 11 JBrowse link 12 104,456,948 104,762,014 RGD:2290271
G CPLANE1 ciliogenesis and planar polarity effector 1 JBrowse link 5 37,063,928 37,249,499 RGD:2290271
G CREBBP CREB binding protein JBrowse link 16 3,725,054 3,880,727 RGD:2290271
G CTNNB1 catenin beta 1 JBrowse link 3 41,199,422 41,240,445 RGD:2290271
G ECE1 endothelin converting enzyme 1 JBrowse link 1 21,217,250 21,345,504 RGD:2290271
G FLVCR1 FLVCR heme transporter 1 JBrowse link 1 212,858,275 212,899,363 RGD:2290271
G FREM2 FRAS1 related extracellular matrix 2 JBrowse link 13 38,687,041 38,887,131 RGD:2290271
G GLI2 GLI family zinc finger 2 JBrowse link 2 120,735,868 120,992,653 RGD:2290271
G GLI3 GLI family zinc finger 3 JBrowse link 7 41,960,949 42,237,209 RGD:2290271
G GNA12 G protein subunit alpha 12 JBrowse link 7 2,728,105 2,844,308 RGD:2290271
G GRHL2 grainyhead like transcription factor 2 JBrowse link 8 101,492,439 101,678,104 RGD:2290271
G HAND2 heart and neural crest derivatives expressed 2 JBrowse link 4 173,526,091 173,530,229 RGD:2290271
G HDAC1 histone deacetylase 1 JBrowse link 1 32,292,083 32,333,628 RGD:2290271
G HDAC2 histone deacetylase 2 JBrowse link 6 113,933,028 113,971,148 RGD:2290271
G HOXA11 homeobox A11 JBrowse link 7 27,181,157 27,185,232 RGD:2290271
G HOXC11 homeobox C11 JBrowse link 12 53,973,126 53,977,643 RGD:2290271
G HOXD12 homeobox D12 JBrowse link 2 176,099,795 176,102,489 RGD:2290271
G HOXD13 homeobox D13 JBrowse link 2 176,087,487 176,095,944 RGD:2290271
G IFT122 intraflagellar transport 122 JBrowse link 3 129,440,036 129,520,507 RGD:2290271
G IFT140 intraflagellar transport 140 JBrowse link 16 1,510,427 1,612,072 RGD:2290271
G IFT52 intraflagellar transport 52 JBrowse link 20 43,590,937 43,647,299 RGD:2290271
G IHH Indian hedgehog signaling molecule JBrowse link 2 219,054,424 219,060,921 RGD:2290271
G INTU inturned planar cell polarity protein JBrowse link 4 127,623,271 127,726,737 RGD:2290271
G LMBR1 limb development membrane protein 1 JBrowse link 7 156,669,012 156,893,208 RGD:2290271
G LNPK lunapark, ER junction formation factor JBrowse link 2 175,923,862 176,002,901 RGD:2290271
G LRP4 LDL receptor related protein 4 JBrowse link 11 46,854,715 46,918,550 RGD:2290271
G LRP5 LDL receptor related protein 5 JBrowse link 11 68,298,866 68,449,275 RGD:2290271
G MAP3K20 mitogen-activated protein kinase kinase kinase 20 JBrowse link 2 173,075,435 173,268,015 RGD:2290271
G MKS1 MKS transition zone complex subunit 1 JBrowse link 17 58,205,436 58,219,605 RGD:2290271
G NOG noggin JBrowse link 17 56,593,699 56,595,611 RGD:2290271
G OSR1 odd-skipped related transcription factor 1 JBrowse link 2 19,351,485 19,358,623 RGD:2290271
G OSR2 odd-skipped related transciption factor 2 JBrowse link 8 98,944,403 98,952,104 RGD:2290271
G ROR2 receptor tyrosine kinase like orphan receptor 2 JBrowse link 9 91,722,598 91,950,228 RGD:2290271
G SALL1 spalt like transcription factor 1 JBrowse link 16 51,135,975 51,151,270 RGD:2290271
G SFRP2 secreted frizzled related protein 2 JBrowse link 4 153,780,591 153,789,083 RGD:2290271
G SHH sonic hedgehog signaling molecule JBrowse link 7 155,799,980 155,812,463 RGD:2290271
G SMAD4 SMAD family member 4 JBrowse link 18 51,030,213 51,085,042 RGD:2290271
G TBC1D32 TBC1 domain family member 32 JBrowse link 6 121,079,494 121,335,384 RGD:2290271
G TBX2 T-box transcription factor 2 JBrowse link 17 61,399,843 61,409,466 RGD:2290271
G TBX3 T-box transcription factor 3 JBrowse link 12 114,670,255 114,684,175 RGD:2290271
G TMEM107 transmembrane protein 107 JBrowse link 17 8,172,457 8,176,380 RGD:2290271
G TMEM231 transmembrane protein 231 JBrowse link 16 75,536,741 75,556,286 RGD:2290271
G TRAF3IP1 TRAF3 interacting protein 1 JBrowse link 2 238,320,489 238,400,900 RGD:2290271
G TULP3 TUB like protein 3 JBrowse link 12 2,890,891 2,941,138 RGD:2290271
G TWIST1 twist family bHLH transcription factor 1 JBrowse link 7 19,113,047 19,117,636 RGD:2290271
G WDPCP WD repeat containing planar cell polarity effector JBrowse link 2 63,119,559 63,588,733 RGD:2290271
G WNT5A Wnt family member 5A JBrowse link 3 55,465,715 55,505,261 RGD:2290271
G WNT7A Wnt family member 7A JBrowse link 3 13,816,258 13,880,071 RGD:2290271
G ZBTB16 zinc finger and BTB domain containing 16 JBrowse link 11 114,059,576 114,256,770 RGD:2290271
apoptotic process involved in embryonic digit morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BAX BCL2 associated X, apoptosis regulator JBrowse link 19 48,954,825 48,961,798 RGD:2290271
G BCL2L11 BCL2 like 11 JBrowse link 2 111,120,914 111,168,445 RGD:2290271
G NOTCH1 notch receptor 1 JBrowse link 9 136,494,433 136,546,048 RGD:2290271
embryonic nail plate morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FZD6 frizzled class receptor 6 JBrowse link 8 103,298,494 103,332,866 RGD:2290271
G MSX1 msh homeobox 1 JBrowse link 4 4,859,665 4,863,936 RGD:2290271
G MSX2 msh homeobox 2 JBrowse link 5 174,724,582 174,730,896 RGD:2290271

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17988
    developmental process 6548
      anatomical structure morphogenesis 2729
        embryonic morphogenesis 605
          embryonic digit morphogenesis 61
            apoptotic process involved in embryonic digit morphogenesis 3
            embryonic nail plate morphogenesis 3
Path 2
Term Annotations click to browse term
  biological_process 17988
    developmental process 6548
      anatomical structure development 6025
        multicellular organism development 5518
          appendage development 181
            appendage morphogenesis 151
              limb morphogenesis 151
                embryonic limb morphogenesis 128
                  embryonic digit morphogenesis 61
                    apoptotic process involved in embryonic digit morphogenesis 3
                    embryonic nail plate morphogenesis 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.