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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of circadian rhythm
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Accession:GO:0042752 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.


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regulation of circadian rhythm term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adcy1 adenylate cyclase 1 JBrowse link 14 87,311,970 87,429,880 RGD:1624291
RGD:1600115
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:1600115
RGD:1624291
G Bhlhe40 basic helix-loop-helix family, member e40 JBrowse link 4 140,703,619 140,709,319 RGD:1600115
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase JBrowse link 1 265,100,094 265,270,263 RGD:1624291
G Ccar2 cell cycle and apoptosis regulator 2 JBrowse link 15 51,818,887 51,834,443 RGD:1624291
RGD:1600115
G Cdk1 cyclin-dependent kinase 1 JBrowse link 20 20,576,341 20,591,510 RGD:1600115
G Clock clock circadian regulator JBrowse link 14 34,418,226 34,502,218 RGD:1600115
G Creb1 cAMP responsive element binding protein 1 JBrowse link 9 71,229,753 71,298,994 RGD:633667
G Crem cAMP responsive element modulator JBrowse link 17 57,021,704 57,090,888 RGD:1582464
G Cry1 cryptochrome circadian regulator 1 JBrowse link 7 24,534,593 24,634,098 RGD:1600115
RGD:1624291
G Cry2 cryptochrome circadian regulator 2 JBrowse link 3 81,314,151 81,344,143 RGD:1600115
RGD:1624291
G Csnk1d casein kinase 1, delta JBrowse link 10 110,147,786 110,182,413 RGD:1600115
RGD:13792537
RGD:1624291
G Csnk1e casein kinase 1, epsilon JBrowse link 7 120,651,976 120,675,559 RGD:1624291
RGD:1600115
G Ddb1 damage-specific DNA binding protein 1 JBrowse link 1 226,657,561 226,683,356 RGD:1600115
G Drd4 dopamine receptor D4 JBrowse link 1 214,278,296 214,282,818 RGD:1600115
RGD:1624291
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit JBrowse link 4 77,284,404 77,347,011 RGD:1624291
RGD:1600115
G Fbxl3 F-box and leucine-rich repeat protein 3 JBrowse link 15 93,647,307 93,667,395 RGD:1624291
G Fbxw7 F-box and WD repeat domain containing 7 JBrowse link 2 184,230,191 184,309,805 RGD:1600115
G Hdac3 histone deacetylase 3 JBrowse link 18 31,073,057 31,094,347 RGD:1600115
G Hnf4a hepatocyte nuclear factor 4, alpha JBrowse link 3 159,902,441 159,965,003 RGD:1600115
G Hnrnpd heterogeneous nuclear ribonucleoprotein D JBrowse link 14 11,256,163 11,274,684 RGD:1624291
RGD:1600115
G Id2 inhibitor of DNA binding 2 JBrowse link 6 44,360,077 44,361,908 RGD:1624291
RGD:1600115
G Klf10 Kruppel-like factor 10 JBrowse link 7 77,156,010 77,162,096 RGD:10047352
G Maged1 MAGE family member D1 JBrowse link X 63,803,194 63,809,715 RGD:1624291
RGD:1600115
G Magel2 MAGE family member L2 JBrowse link 1 123,015,404 123,019,945 RGD:1624291
RGD:1600115
G Mapk10 mitogen activated protein kinase 10 JBrowse link 14 8,079,955 8,371,508 RGD:1624291
RGD:1600115
G Mapk8 mitogen-activated protein kinase 8 JBrowse link 16 9,620,854 9,709,342 RGD:1624291
RGD:1600115
G Mapk9 mitogen-activated protein kinase 9 JBrowse link 10 35,333,859 35,374,364 RGD:1600115
RGD:1624291
G Noct nocturnin JBrowse link 2 140,286,661 140,306,869 RGD:1624291
RGD:1600115
G Nono non-POU domain containing, octamer-binding JBrowse link X 71,324,365 71,342,225 RGD:1624291
RGD:1600115
G Npas2 neuronal PAS domain protein 2 JBrowse link 9 45,901,262 46,081,880 RGD:1624291
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 JBrowse link 10 86,683,875 86,690,815 RGD:8553819
RGD:13792537
RGD:1624291
RGD:1600115
G Nr1d2 nuclear receptor subfamily 1, group D, member 2 JBrowse link 15 8,730,871 8,757,165 RGD:1624291
RGD:13792537
RGD:1600115
G Opn4 opsin 4 JBrowse link 16 10,943,353 10,966,602 RGD:1624291
RGD:1600115
G Per1 period circadian regulator 1 JBrowse link 10 55,681,761 55,696,557 RGD:1624291
RGD:1600115
G Per2 period circadian regulator 2 JBrowse link 9 98,555,154 98,597,362 RGD:1600115
RGD:1624291
G Pml promyelocytic leukemia JBrowse link 8 63,002,515 63,034,310 RGD:1624291
G Ppara peroxisome proliferator activated receptor alpha JBrowse link 7 126,618,872 126,687,282 RGD:1624291
RGD:1600115
G Pparg peroxisome proliferator-activated receptor gamma JBrowse link 4 147,274,055 147,399,383 RGD:1624291
RGD:1600115
G Ppargc1a PPARG coactivator 1 alpha JBrowse link 14 63,095,291 63,190,688 RGD:1624291
RGD:1600115
G Ppp1ca protein phosphatase 1 catalytic subunit alpha JBrowse link 1 219,439,953 219,443,570 RGD:1624291
RGD:13792537
RGD:1600115
G Ppp1cb protein phosphatase 1 catalytic subunit beta JBrowse link 6 23,548,507 23,581,136 RGD:1624291
RGD:13792537
RGD:1600115
G Ppp1cc protein phosphatase 1 catalytic subunit gamma JBrowse link 12 39,864,302 39,882,030 RGD:1624291
RGD:13792537
RGD:1600115
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 2 54,857,688 54,893,404 RGD:1624291
RGD:1600115
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 5 124,568,845 124,642,569 RGD:1600115
RGD:1624291
G Prkcg protein kinase C, gamma JBrowse link 1 64,407,098 64,433,698 RGD:1624291
RGD:1600115
G Prkdc protein kinase, DNA-activated, catalytic subunit JBrowse link 11 89,293,547 89,510,948 RGD:1624291
RGD:1600115
G Prox1 prospero homeobox 1 JBrowse link 13 108,382,536 108,444,107 RGD:1624291
RGD:1600115
G Pspc1 paraspeckle component 1 JBrowse link 15 36,946,914 37,030,273 RGD:1624291
RGD:1600115
G Rock2 Rho-associated coiled-coil containing protein kinase 2 JBrowse link 6 42,180,864 42,289,910 RGD:1624291
RGD:1600115
G Rora RAR-related orphan receptor A JBrowse link 8 75,515,886 75,616,477 RGD:1624291
G Rorb RAR-related orphan receptor B JBrowse link 1 234,252,757 234,442,597 RGD:1600115
RGD:1624291
G Sfpq splicing factor proline and glutamine rich JBrowse link 5 145,079,803 145,088,517 RGD:1624291
G Siah2 siah E3 ubiquitin protein ligase 2 JBrowse link 2 148,874,151 148,891,900 RGD:1600115
RGD:1624291
G Spsb4 splA/ryanodine receptor domain and SOCS box containing 4 JBrowse link 8 104,840,939 104,912,959 RGD:1600115
RGD:1624291
G Timeless timeless circadian regulator JBrowse link 7 2,643,288 2,667,329 RGD:1600115
RGD:1624291
G Top2a DNA topoisomerase II alpha JBrowse link 10 86,901,467 86,930,947 RGD:1600115
RGD:1624291
G Ube3a ubiquitin protein ligase E3A JBrowse link 1 116,586,901 116,678,161 RGD:1624291
RGD:1600115
G Usp7 ubiquitin specific peptidase 7 JBrowse link 10 6,930,462 7,019,910 RGD:1600115
G Usp9x ubiquitin specific peptidase 9, X-linked JBrowse link X 10,510,033 10,660,555 RGD:1600115
RGD:1624291
entrainment of circadian clock term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atoh7 atonal bHLH transcription factor 7 JBrowse link 20 27,082,961 27,083,410 RGD:1624291
RGD:1600115
G Chrm1 cholinergic receptor, muscarinic 1 JBrowse link 1 224,869,087 224,885,101 RGD:1624291
G Clock clock circadian regulator JBrowse link 14 34,418,226 34,502,218 RGD:632379
G Id2 inhibitor of DNA binding 2 JBrowse link 6 44,360,077 44,361,908 RGD:1624291
G Phlpp1 PH domain and leucine rich repeat protein phosphatase 1 JBrowse link 13 26,145,989 26,394,505 RGD:1624291
RGD:1600115
G Sox14 SRY box 14 JBrowse link 8 108,107,865 108,109,801 RGD:1624291
RGD:1600115
entrainment of circadian clock by photoperiod term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aanat aralkylamine N-acetyltransferase JBrowse link 10 105,568,091 105,572,407 RGD:1298540
G Bhlhe40 basic helix-loop-helix family, member e40 JBrowse link 4 140,703,619 140,709,319 RGD:1624291
RGD:1600115
G Crtc1 CREB regulated transcription coactivator 1 JBrowse link 16 20,740,746 20,798,145 RGD:1624291
RGD:1600115
G Cry1 cryptochrome circadian regulator 1 JBrowse link 7 24,534,593 24,634,098 RGD:1624291
RGD:1600115
G Cry2 cryptochrome circadian regulator 2 JBrowse link 3 81,314,151 81,344,143 RGD:1600115
RGD:1624291
G Fbxl21 F-box and leucine-rich repeat protein 21 JBrowse link 17 8,505,771 8,520,208 RGD:1624291
RGD:13792537
G Fbxl3 F-box and leucine-rich repeat protein 3 JBrowse link 15 93,647,307 93,667,395 RGD:1624291
RGD:13792537
G Id2 inhibitor of DNA binding 2 JBrowse link 6 44,360,077 44,361,908 RGD:1624291
RGD:1600115
G Mta1 metastasis associated 1 JBrowse link 6 137,911,302 137,950,066 RGD:1624291
RGD:1600115
G Nr2f6 nuclear receptor subfamily 2, group F, member 6 JBrowse link 16 19,769,968 19,777,414 RGD:1624291
RGD:1600115
G Opn4 opsin 4 JBrowse link 16 10,943,353 10,966,602 RGD:1624291
G Per1 period circadian regulator 1 JBrowse link 10 55,681,761 55,696,557 RGD:1600115
RGD:13792537
RGD:1624291
G Per2 period circadian regulator 2 JBrowse link 9 98,555,154 98,597,362 RGD:13792537
G Per3 period circadian regulator 3 JBrowse link 5 168,088,126 168,123,482 RGD:13792537
G Pml promyelocytic leukemia JBrowse link 8 63,002,515 63,034,310 RGD:1624291
RGD:1600115
G Ppp1ca protein phosphatase 1 catalytic subunit alpha JBrowse link 1 219,439,953 219,443,570 RGD:1624291
RGD:13792537
RGD:1600115
G Ppp1cb protein phosphatase 1 catalytic subunit beta JBrowse link 6 23,548,507 23,581,136 RGD:1624291
RGD:1600115
G Ppp1cc protein phosphatase 1 catalytic subunit gamma JBrowse link 12 39,864,302 39,882,030 RGD:1624291
RGD:13792537
RGD:1600115
G Rbm4 RNA binding motif protein 4 JBrowse link 1 220,038,403 220,049,756 RGD:1624291
G Rbm4b RNA binding motif protein 4B JBrowse link 1 220,009,397 220,019,488 RGD:1624291
RGD:1600115
G Sik1 salt-inducible kinase 1 JBrowse link 20 10,670,747 10,680,279 RGD:1624291
RGD:1600115
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
RGD:1600115
G Usp2 ubiquitin specific peptidase 2 JBrowse link 8 48,403,985 48,432,525 RGD:1624291
RGD:1600115
negative regulation of circadian rhythm term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cipc CLOCK-interacting pacemaker JBrowse link 6 110,968,014 110,990,912 RGD:1624291
RGD:1600115
G Cry1 cryptochrome circadian regulator 1 JBrowse link 7 24,534,593 24,634,098 RGD:1600115
RGD:1624291
G Cry2 cryptochrome circadian regulator 2 JBrowse link 3 81,314,151 81,344,143 RGD:1600115
RGD:1624291
G Pasd1 PAS domain containing repressor 1 JBrowse link 16
16
70,001,708
70,011,911
70,006,009
70,027,313
RGD:1624291
G Per2 period circadian regulator 2 JBrowse link 9 98,555,154 98,597,362 RGD:1624291
RGD:1600115
G Piwil2 piwi-like RNA-mediated gene silencing 2 JBrowse link 15 52,037,693 52,116,277 RGD:1600115
G Sfpq splicing factor proline and glutamine rich JBrowse link 5 145,079,803 145,088,517 RGD:1624291
G Sin3a SIN3 transcription regulator family member A JBrowse link 8 61,748,590 61,803,314 RGD:1624291
RGD:1600115
G Suv39h1 suppressor of variegation 3-9 homolog 1 JBrowse link X 146,532,002 146,533,538 RGD:1624291
G Suv39h2 suppressor of variegation 3-9 homolog 2 JBrowse link 17 78,762,897 78,782,016 RGD:1624291
negative regulation of circadian sleep/wake cycle, non-REM sleep term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ada adenosine deaminase JBrowse link 3 160,115,840 160,139,947 RGD:5128864
G Adora1 adenosine A1 receptor JBrowse link 13 51,042,111 51,076,913 RGD:2317916
negative regulation of circadian sleep/wake cycle, REM sleep term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ghrl ghrelin and obestatin prepropeptide JBrowse link 4 145,674,157 145,678,066 RGD:1624291
RGD:1600115
G Htr7 5-hydroxytryptamine receptor 7 JBrowse link 1 254,547,964 254,671,811 RGD:6480669
G Ptger4 prostaglandin E receptor 4 JBrowse link 2 54,951,625 54,966,470 RGD:10043386
negative regulation of circadian sleep/wake cycle, sleep term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adora1 adenosine A1 receptor JBrowse link 13 51,042,111 51,076,913 RGD:1625234
G Drd1 dopamine receptor D1 JBrowse link 17 11,099,736 11,104,352 RGD:1581422
G Drd2 dopamine receptor D2 JBrowse link 8 53,678,777 53,743,643 RGD:1581422
negative regulation of circadian sleep/wake cycle, wakefulness term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ptger3 prostaglandin E receptor 3 JBrowse link 2 263,895,093 263,979,682 RGD:10043386
negative regulation of locomotor rhythm term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lepr leptin receptor JBrowse link 5 120,503,475 120,682,281 RGD:10412019
positive regulation of circadian rhythm term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arntl aryl hydrocarbon receptor nuclear translocator-like JBrowse link 1 178,039,002 178,137,469 RGD:1600115
RGD:1624291
G Arntl2 aryl hydrocarbon receptor nuclear translocator-like 2 JBrowse link 4 181,103,774 181,158,415 RGD:1624291
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase JBrowse link 1 265,100,094 265,270,263 RGD:1624291
RGD:1600115
G Fbxw11 F-box and WD repeat domain containing 11 JBrowse link 10 17,542,374 17,640,718 RGD:1624291
RGD:1600115
G Mtnr1b melatonin receptor 1B JBrowse link 8 14,359,270 14,373,894 RGD:9588678
G Nkx2-1 NK2 homeobox 1 JBrowse link 6 77,418,096 77,423,383 RGD:1600115
RGD:1624291
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 JBrowse link 10 86,683,875 86,690,815 RGD:10448985
G Prkg1 protein kinase, cGMP-dependent, type 1 JBrowse link 1 248,982,039 250,300,952 RGD:7777105
G Rora RAR-related orphan receptor A JBrowse link 8 75,515,886 75,616,477 RGD:1624291
RGD:1600115
G Rorc RAR-related orphan receptor C JBrowse link 2 195,612,471 195,636,797 RGD:1624291
G Thrap3 thyroid hormone receptor associated protein 3 JBrowse link 5 144,178,248 144,221,318 RGD:1624291
RGD:1600115
G Timeless timeless circadian regulator JBrowse link 7 2,643,288 2,667,329 RGD:734503
positive regulation of circadian sleep/wake cycle, non-REM sleep term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alb albumin JBrowse link 14 19,176,275 19,191,793 RGD:1625449
G Casp1 caspase 1 JBrowse link 8 2,605,743 2,614,637 RGD:2315921
G Ghrh growth hormone releasing hormone JBrowse link 3 153,449,124 153,468,794 RGD:2325188
RGD:10401262
G Ghrhr growth hormone releasing hormone receptor JBrowse link 4 85,587,321 85,602,389 RGD:10401262
G Ghrl ghrelin and obestatin prepropeptide JBrowse link 4 145,674,157 145,678,066 RGD:1624291
RGD:1600115
G Mtnr1b melatonin receptor 1B JBrowse link 8 14,359,270 14,373,894 RGD:9588660
RGD:9588665
G Npy2r neuropeptide Y receptor Y2 JBrowse link 2 181,528,949 181,538,145 RGD:1642507
G Ptger3 prostaglandin E receptor 3 JBrowse link 2 263,895,093 263,979,682 RGD:10043386
G Ptger4 prostaglandin E receptor 4 JBrowse link 2 54,951,625 54,966,470 RGD:10043386
positive regulation of circadian sleep/wake cycle, REM sleep term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ghrh growth hormone releasing hormone JBrowse link 3 153,449,124 153,468,794 RGD:1624291
G Pmch pro-melanin-concentrating hormone JBrowse link 7 28,655,206 28,656,522 RGD:1642489
G Uts2 urotensin 2 JBrowse link 5 168,078,748 168,084,133 RGD:2306844
G Uts2r urotensin 2 receptor JBrowse link 10 110,364,291 110,365,451 RGD:2306844
positive regulation of circadian sleep/wake cycle, sleep term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adora2a adenosine A2a receptor JBrowse link 20 14,265,251 14,282,873 RGD:1625234
G Opn4 opsin 4 JBrowse link 16 10,943,353 10,966,602 RGD:1624291
positive regulation of circadian sleep/wake cycle, wakefulness term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nlgn1 neuroligin 1 JBrowse link 2 111,057,291 111,973,681 RGD:1624291
RGD:1600115
G Nps neuropeptide S JBrowse link 1 207,508,414 207,512,195 RGD:9831203
G Uts2 urotensin 2 JBrowse link 5 168,078,748 168,084,133 RGD:2306844
G Uts2r urotensin 2 receptor JBrowse link 10 110,364,291 110,365,451 RGD:2306844
regulation of circadian sleep/wake cycle, non-REM sleep term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit JBrowse link 2 189,088,570 189,096,785 RGD:1624291
RGD:1600115
G Il18 interleukin 18 JBrowse link 8 55,009,666 55,016,286 RGD:8554500
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:1358315
G Kcna2 potassium voltage-gated channel subfamily A member 2 JBrowse link 2 209,838,607 209,852,471 RGD:1624291
RGD:1600115
regulation of circadian sleep/wake cycle, REM sleep term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit JBrowse link 2 189,088,570 189,096,785 RGD:1624291
RGD:1600115
regulation of circadian sleep/wake cycle, sleep term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ada adenosine deaminase JBrowse link 3 160,115,840 160,139,947 RGD:631747
G Cort cortistatin JBrowse link 5 165,942,780 165,944,221 RGD:727760
G Csf2 colony stimulating factor 2 JBrowse link 10 39,602,089 39,604,070 RGD:10449529
G Drd3 dopamine receptor D3 JBrowse link 11 61,819,102 61,883,223 RGD:1625069
G Nmu neuromedin U JBrowse link 14 34,353,683 34,381,968 RGD:12911001
G Per3 period circadian regulator 3 JBrowse link 5 168,088,126 168,123,482 RGD:1600115
RGD:1624291
G Pglyrp1 peptidoglycan recognition protein 1 JBrowse link 1 79,790,879 79,796,064 RGD:724610
G Ptgds prostaglandin D2 synthase JBrowse link 3 2,686,125 2,689,059 RGD:1624291
RGD:8553735
regulation of circadian sleep/wake cycle, wakefulness term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hcrtr2 hypocretin receptor 2 JBrowse link 8 83,307,684 83,421,612 RGD:1600115
RGD:1624291
G Ptger3 prostaglandin E receptor 3 JBrowse link 2 263,895,093 263,979,682 RGD:10043386
G Ptger4 prostaglandin E receptor 4 JBrowse link 2 54,951,625 54,966,470 RGD:10043386
regulation of locomotor rhythm term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Oprl1 opioid related nociceptin receptor 1 JBrowse link 3 177,223,779 177,231,663 RGD:9835023
G Zfhx3 zinc finger homeobox 3 JBrowse link 19 42,753,983 42,925,794 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17883
    regulation of biological process 11939
      regulation of circadian rhythm 122
        entrainment of circadian clock + 28
        negative regulation of circadian rhythm + 19
        positive regulation of circadian rhythm + 27
        regulation of circadian sleep/wake cycle + 33
        regulation of locomotor rhythm + 3
        temperature compensation of the circadian clock 0
Path 2
Term Annotations click to browse term
  biological_process 17883
    rhythmic process 376
      circadian rhythm 252
        regulation of circadian rhythm 122
          entrainment of circadian clock + 28
          negative regulation of circadian rhythm + 19
          positive regulation of circadian rhythm + 27
          regulation of circadian sleep/wake cycle + 33
          regulation of locomotor rhythm + 3
          temperature compensation of the circadian clock 0
paths to the root