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ONTOLOGY REPORT - ANNOTATIONS


Term:vitamin B6 metabolic process
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Accession:GO:0042816 term browser browse the term
Definition:The chemical reactions and pathways involving any of the vitamin B6 compounds: pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate.
Synonyms:exact_synonym: vitamin B6 metabolism


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vitamin B6 metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AOX1 aldehyde oxidase 1 TAS Reactome Reactome:R-HSA-964975 NCBI chr 2:200,585,952...200,677,064
Ensembl chr 2:200,586,014...200,677,064
JBrowse link
G PDXK pyridoxal kinase TAS Reactome Reactome:R-HSA-964975 NCBI chr21:43,719,129...43,762,299
Ensembl chr21:43,719,094...43,762,307
JBrowse link
G PNPO pyridoxamine 5'-phosphate oxidase TAS Reactome Reactome:R-HSA-964975 NCBI chr17:47,941,524...47,949,308
Ensembl chr17:47,941,506...47,949,308
JBrowse link
pyridoxal 5'-phosphate salvage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDXK pyridoxal kinase IEA InterPro GO_REF:0000002 NCBI chr21:43,737,000...43,738,097
Ensembl chr21:43,719,094...43,762,307
JBrowse link
G PDXK pyridoxal kinase IMP
IBA
IEA
IC
IDA
(PMID:31187503)
(PMID:21873635)
(PMID:17766369)
(PMID:10987144), (PMID:17766369), (PMID:9099727)
UniProt
GO_Central
InterPro
PMID:9099727, PMID:10987144, PMID:17766369, PMID:21873635, PMID:31187503 GO_REF:0000002 NCBI chr21:43,719,129...43,762,299
Ensembl chr21:43,719,094...43,762,307
JBrowse link
pyridoxal phosphate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDXK pyridoxal kinase ISO RGD PMID:2988502 RGD:2303018 NCBI chr21:43,737,000...43,738,097
Ensembl chr21:43,719,094...43,762,307
JBrowse link
G PNPO pyridoxamine 5'-phosphate oxidase IEA
IDA
IBA
(PMID:12824491)
(PMID:21873635)
GOC
CAFA
GO_Central
PMID:12824491, PMID:21873635 GO_REF:0000108 NCBI chr17:47,941,524...47,949,308
Ensembl chr17:47,941,506...47,949,308
JBrowse link
pyridoxal phosphate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDXP pyridoxal phosphatase ISS UniProtKB GO_REF:0000024 NCBI chr22:37,658,723...37,666,932
Ensembl chr22:37,658,723...37,666,932
JBrowse link
pyridoxine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PNPO pyridoxamine 5'-phosphate oxidase IEA InterPro
UniProt
GO_REF:0000002, GO_REF:0000043 NCBI chr17:47,941,524...47,949,308
Ensembl chr17:47,941,506...47,949,308
JBrowse link
G PSAT1 phosphoserine aminotransferase 1 NAS (PMID:10637769) UniProtKB PMID:10637769 NCBI chr 9:78,297,125...78,330,093
Ensembl chr 9:78,297,125...78,330,093
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18651
    metabolic process 12286
      small molecule metabolic process 2140
        vitamin metabolic process 140
          water-soluble vitamin metabolic process 89
            vitamin B6 metabolic process 6
              pyridoxal metabolic process + 0
              pyridoxal phosphate metabolic process + 4
              pyridoxamine metabolic process + 0
              pyridoxine metabolic process + 2
              vitamin B6 biosynthetic process + 4
              vitamin B6 catabolic process + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.