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ONTOLOGY REPORT - ANNOTATIONS


Term:pyridoxal phosphate biosynthetic process
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Accession:GO:0042823 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6.
Synonyms:exact_synonym: active vitamin B6 biosynthesis;   active vitamin B6 biosynthetic process;   pyridoxal phosphate anabolism;   pyridoxal phosphate biosynthesis;   pyridoxal phosphate formation;   pyridoxal phosphate synthesis
 xref: MetaCyc:PWY0-845


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pyridoxal phosphate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDXK pyridoxal kinase ISO RGD PMID:2988502 RGD:2303018 NCBI chr21:43,737,000...43,738,097
Ensembl chr21:43,719,094...43,762,307
JBrowse link
G PNPO pyridoxamine 5'-phosphate oxidase IEA
IDA
IBA
(PMID:12824491)
(PMID:21873635)
GOC
CAFA
GO_Central
PMID:12824491, PMID:21873635 GO_REF:0000108 NCBI chr17:47,941,524...47,949,308
Ensembl chr17:47,941,506...47,949,308
JBrowse link
pyridoxal 5'-phosphate salvage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDXK pyridoxal kinase IEA InterPro GO_REF:0000002 NCBI chr21:43,737,000...43,738,097
Ensembl chr21:43,719,094...43,762,307
JBrowse link
G PDXK pyridoxal kinase IMP
IBA
IEA
IC
IDA
(PMID:31187503)
(PMID:21873635)
(PMID:17766369)
(PMID:10987144), (PMID:17766369), (PMID:9099727)
UniProt
GO_Central
InterPro
PMID:9099727, PMID:10987144, PMID:17766369, PMID:21873635, PMID:31187503 GO_REF:0000002 NCBI chr21:43,719,129...43,762,299
Ensembl chr21:43,719,094...43,762,307
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18626
    metabolic process 12276
      cellular metabolic process 11259
        cellular aromatic compound metabolic process 6222
          aromatic compound biosynthetic process 4463
            pyridoxal phosphate biosynthetic process 3
              'de novo' pyridoxal 5'-phosphate biosynthetic process 0
              pyridoxal 5'-phosphate salvage + 2
Path 2
Term Annotations click to browse term
  biological_process 18626
    metabolic process 12276
      small molecule metabolic process 2139
        vitamin metabolic process 140
          water-soluble vitamin metabolic process 89
            water-soluble vitamin biosynthetic process 9
              vitamin B6 biosynthetic process 4
                pyridoxal phosphate biosynthetic process 3
                  'de novo' pyridoxal 5'-phosphate biosynthetic process 0
                  pyridoxal 5'-phosphate salvage + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.