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ONTOLOGY REPORT - ANNOTATIONS


Term:pyridoxal phosphate biosynthetic process
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Accession:GO:0042823 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6.
Synonyms:exact_synonym: active vitamin B6 biosynthesis;   active vitamin B6 biosynthetic process;   pyridoxal phosphate anabolism;   pyridoxal phosphate biosynthesis;   pyridoxal phosphate formation;   pyridoxal phosphate synthesis
 xref: MetaCyc:PWY0-845


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pyridoxal phosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pdxk pyridoxal kinase JBrowse link 20 10,930,651 10,952,194 RGD:2303018
G Pnpo pyridoxamine 5'-phosphate oxidase JBrowse link 10 84,874,926 84,881,190 RGD:1624291
RGD:13792537
pyridoxal 5'-phosphate salvage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pdxk pyridoxal kinase JBrowse link 20 10,930,651 10,952,194 RGD:1600115
RGD:1624291
RGD:13792537
G RGD1566085 similar to pyridoxal (pyridoxine, vitamin B6) kinase JBrowse link 20 10,883,952 10,912,870 RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19578
    metabolic process 11901
      cellular metabolic process 10737
        cellular aromatic compound metabolic process 5503
          aromatic compound biosynthetic process 3823
            pyridoxal phosphate biosynthetic process 3
              'de novo' pyridoxal 5'-phosphate biosynthetic process 0
              pyridoxal 5'-phosphate salvage + 2
Path 2
Term Annotations click to browse term
  biological_process 19578
    metabolic process 11901
      small molecule metabolic process 1824
        vitamin metabolic process 84
          water-soluble vitamin metabolic process 40
            water-soluble vitamin biosynthetic process 8
              vitamin B6 biosynthetic process 3
                pyridoxal phosphate biosynthetic process 3
                  'de novo' pyridoxal 5'-phosphate biosynthetic process 0
                  pyridoxal 5'-phosphate salvage + 2
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.