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ONTOLOGY REPORT - ANNOTATIONS


Term:ribonucleoprotein complex binding
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Accession:GO:0043021 term browser browse the term
Definition:Interacting selectively and non-covalently with any complex of RNA and protein.
Synonyms:exact_synonym: RNP binding;   protein-RNA complex binding;   ribonucleoprotein binding


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ribonucleoprotein complex binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07026997.1 RGD:13792537
G AABR07032328.1 RGD:13792537
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 JBrowse link 4 155,386,367 155,414,034 RGD:10041038
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link 7 117,514,529 117,538,342 RGD:1624291
RGD:13792537
G Cbx5 chromobox 5 JBrowse link 7 144,819,673 144,865,014 RGD:1624291
G Cd2bp2 Cd2 (cytoplasmic tail) binding protein 2 JBrowse link 1 198,635,445 198,641,195 RGD:1624291
G Ckap5 cytoskeleton associated protein 5 JBrowse link 3 80,424,320 80,526,583 RGD:1624291
RGD:1600115
G Csnk2a1 casein kinase 2 alpha 1 JBrowse link 3 147,713,808 147,760,375 RGD:11565844
G Csnk2b casein kinase 2 beta JBrowse link 20 5,108,692 5,113,675 RGD:11565844
G Ddx5 DEAD-box helicase 5 JBrowse link 10 94,979,759 94,988,461 RGD:1624291
G Eefsec eukaryotic elongation factor, selenocysteine-tRNA-specific JBrowse link 4 120,194,335 120,390,203 RGD:1624291
G Eif4a3 eukaryotic translation initiation factor 4A3 JBrowse link 10 108,415,201 108,425,195 RGD:10044262
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit JBrowse link 4 77,284,404 77,347,011 RGD:1624291
G Gemin4 gem (nuclear organelle) associated protein 4 JBrowse link 10 64,364,808 64,375,885 RGD:1624291
RGD:1600115
G Hnrnpc heterogeneous nuclear ribonucleoprotein C JBrowse link 15 28,486,605 28,517,353 RGD:10041038
G Hnrnpk heterogeneous nuclear ribonucleoprotein K JBrowse link 17 6,664,730 6,676,753 RGD:10054427
RGD:2303817
RGD:10058967
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 13 96,222,093 96,238,845 RGD:10058983
RGD:13792537
RGD:1624291
RGD:1600115
G Ifih1 interferon induced with helicase C domain 1 JBrowse link 3 48,557,696 48,604,097 RGD:1624291
G Itch itchy E3 ubiquitin protein ligase JBrowse link 3 150,660,665 150,752,016 RGD:1624291
G LOC100360522 ribosomal protein P1-like JBrowse link 17 9,233,473 9,234,857 RGD:13792537
G Mdm2 MDM2 proto-oncogene JBrowse link 7 60,719,060 60,743,618 RGD:1624291
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link 14 84,211,600 84,227,980 RGD:1600115
G Phf6 PHD finger protein 6 JBrowse link X 158,698,353 158,739,855 RGD:1624291
G Ppih peptidylprolyl isomerase H JBrowse link 5 138,343,934 138,361,743 RGD:1624291
RGD:13792537
G Ppp1ca protein phosphatase 1 catalytic subunit alpha JBrowse link 1 219,439,953 219,443,570 RGD:1580663
G Pqbp1 polyglutamine binding protein 1 JBrowse link X 15,448,570 15,453,130 RGD:1624291
RGD:1600115
G Prmt5 protein arginine methyltransferase 5 JBrowse link 15 33,156,508 33,165,893 RGD:1624291
G Prmt7 protein arginine methyltransferase 7 JBrowse link 19 38,189,605 38,237,155 RGD:1624291
G Prpf31 pre-mRNA processing factor 31 JBrowse link 1 64,150,786 64,162,461 RGD:1624291
G Prpf6 pre-mRNA processing factor 6 JBrowse link 3 177,098,137 177,162,937 RGD:1624291
G Rnasel ribonuclease L JBrowse link 13 71,188,712 71,202,636 RGD:1624291
G Rnf135 ring finger protein 135 JBrowse link 10 67,531,989 67,551,237 RGD:13792537
RGD:1600115
RGD:1624291
G Rpl35 ribosomal protein L35 JBrowse link 3 23,294,813 23,297,774 RGD:11039428
G Rpl35a ribosomal protein L35a JBrowse link 11 70,963,223 70,967,146 RGD:11039427
G Rplp1 ribosomal protein lateral stalk subunit P1 JBrowse link 8 66,862,143 66,863,476 RGD:10054427
RGD:13792537
G Rplp2 ribosomal protein lateral stalk subunit P2 JBrowse link 1 214,428,280 214,430,551 RGD:10054427
G Secisbp2 SECIS binding protein 2 JBrowse link 17 13,555,348 13,586,595 RGD:1624291
RGD:13792537
RGD:1600115
G Secisbp2l SECIS binding protein 2-like JBrowse link 3 118,007,950 118,051,403 RGD:13792537
G Smg6 SMG6 nonsense mediated mRNA decay factor JBrowse link 10
10
61,526,024
61,771,912
61,542,583
62,007,030
RGD:1624291
G Srp54a signal recognition particle 54A JBrowse link 6 75,996,629 76,035,768 RGD:1624291
G Timm50 translocase of inner mitochondrial membrane 50 JBrowse link 1 85,470,810 85,480,813 RGD:1624291
G Top2b DNA topoisomerase II beta JBrowse link 15 10,262,972 10,319,741 RGD:10058983
G Uhmk1 U2AF homology motif kinase 1 JBrowse link 13 88,521,625 88,536,728 RGD:1624291
RGD:13792537
G Wdr12 WD repeat domain 12 JBrowse link 9 66,851,499 66,878,534 RGD:1600115
G Ybx2 Y box binding protein 2 JBrowse link 10 56,546,689 56,552,339 RGD:1624291
G Ybx3 Y box binding protein 3 JBrowse link 4 165,606,819 165,630,041 RGD:1624291
box C/D snoRNP complex binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nolc1 nucleolar and coiled-body phosphoprotein 1 JBrowse link 1 265,829,055 265,839,819 RGD:633515
box H/ACA snoRNP complex binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nolc1 nucleolar and coiled-body phosphoprotein 1 JBrowse link 1 265,829,055 265,839,819 RGD:633515
mitochondrial ribosome binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C1qbp complement C1q binding protein JBrowse link 10 57,613,876 57,618,527 RGD:1624291
RGD:13792537
RGD:1600115
G Gadd45gip1 GADD45G interacting protein 1 JBrowse link 19 25,946,979 25,949,528 RGD:1624291
G Lexm lymphocyte expansion molecule JBrowse link 5 126,196,071 126,221,916 RGD:1624291
G Mrps27 mitochondrial ribosomal protein S27 JBrowse link 2 29,598,344 29,666,711 RGD:1624291
G Oxa1l OXA1L, mitochondrial inner membrane protein JBrowse link 15 33,004,957 33,012,584 RGD:1624291
polysome binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhx9 DExH-box helicase 9 JBrowse link 13 70,885,503 70,922,278 RGD:1624291
G Lin28a lin-28 homolog A JBrowse link 5 152,230,343 152,247,873 RGD:1624291
G Piwil1 piwi-like RNA-mediated gene silencing 1 JBrowse link 12 31,608,641 31,629,961 RGD:1624291
G Piwil2 piwi-like RNA-mediated gene silencing 2 JBrowse link 15 52,037,693 52,116,277 RGD:1624291
G Unk unk zinc finger JBrowse link 10 104,582,531 104,613,102 RGD:1624291
G Ybx3 Y box binding protein 3 JBrowse link 4 165,606,819 165,630,041 RGD:1624291
RGD:1600115
preribosome binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nvl nuclear VCP-like JBrowse link 13 99,410,026 99,468,783 RGD:1624291
RGD:13792537
ribosomal large subunit binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07064719.2 RGD:13792537
G Cpeb2 cytoplasmic polyadenylation element binding protein 2 JBrowse link 14 72,327,929 72,382,519 RGD:8553654
G Cpsf6 cleavage and polyadenylation specific factor 6 JBrowse link 7 60,385,688 60,417,661 RGD:1624291
G Dhx33 DEAH-box helicase 33 JBrowse link 10 57,622,022 57,638,485 RGD:1624291
G Eif1a eukaryotic translation initiation factor 1A JBrowse link 18 40,586,315 40,598,661 RGD:10755421
G Eif6 eukaryotic translation initiation factor 6 JBrowse link 3 151,356,867 151,363,201 RGD:1600115
RGD:13792537
G Ltn1 listerin E3 ubiquitin protein ligase 1 JBrowse link 11 27,023,328 27,080,575 RGD:13792537
G Malsu1 mitochondrial assembly of ribosomal large subunit 1 JBrowse link 4 78,735,279 78,744,102 RGD:13792537
G Mrrf mitochondrial ribosome recycling factor JBrowse link 3 15,463,884 15,520,621 RGD:13792537
G Nmd3 NMD3 ribosome export adaptor JBrowse link 2 166,402,838 166,428,331 RGD:1624291
RGD:13792537
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:1624291
G Ola1 Obg-like ATPase 1 JBrowse link 3 59,802,007 59,920,935 RGD:1600115
G Rbm3 RNA binding motif protein 3 JBrowse link X 15,098,880 15,102,344 RGD:1624291
RGD:13792537
G Zfp593 zinc finger protein 593 JBrowse link 5 152,462,522 152,464,850 RGD:13792537
ribosomal small subunit binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07054186.1 RGD:13792537
G Abce1 ATP binding cassette subfamily E member 1 JBrowse link 19 31,867,960 31,892,863 RGD:13792537
G Cpeb2 cytoplasmic polyadenylation element binding protein 2 JBrowse link 14 72,327,929 72,382,519 RGD:8553654
G Ddx3x DEAD-box helicase 3, X-linked JBrowse link X 10,400,363 10,414,010 RGD:1624291
G Dhx29 DExH-box helicase 29 JBrowse link 2 44,787,066 44,837,834 RGD:1624291
G Eif1 eukaryotic translation initiation factor 1 JBrowse link 10 88,227,455 88,229,546 RGD:13792537
G Eif1b eukaryotic translation initiation factor 1B JBrowse link 8 129,158,112 129,160,726 RGD:13792537
G Eral1 Era-like 12S mitochondrial rRNA chaperone 1 JBrowse link 10 65,272,849 65,291,070 RGD:1624291
RGD:13792537
RGD:1600115
G Larp1 La ribonucleoprotein 1, translational regulator JBrowse link 10 43,435,738 43,501,186 RGD:1624291
G Mtif3 mitochondrial translational initiation factor 3 JBrowse link 12 9,846,355 9,857,548 RGD:1624291
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 JBrowse link 10 81,657,152 81,666,542 RGD:1624291
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:1624291
G Pim1 Pim-1 proto-oncogene, serine/threonine kinase JBrowse link 20 8,165,423 8,169,557 RGD:1624291
G Ptcd3 Pentatricopeptide repeat domain 3 JBrowse link 4 99,795,646 99,822,960 RGD:1624291
RGD:13792537
G Ung uracil-DNA glycosylase JBrowse link 12 48,246,593 48,255,547 RGD:1624291
ribosome binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07047089.1 RGD:13792537
G Abcf1 ATP binding cassette subfamily F member 1 JBrowse link 20 3,309,914 3,322,828 RGD:1600115
RGD:1624291
G AC118772.1 RGD:13792537
G Bag6 BAG cochaperone 6 JBrowse link 20 5,124,512 5,138,084 RGD:1624291
RGD:1600115
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 JBrowse link 1 143,171,457 143,278,485 RGD:13792537
G Cpeb2 cytoplasmic polyadenylation element binding protein 2 JBrowse link 14 72,327,929 72,382,519 RGD:1624291
RGD:1600115
RGD:13792537
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 JBrowse link 1 255,660,165 255,842,671 RGD:13792537
G Cpeb4 cytoplasmic polyadenylation element binding protein 4 JBrowse link 10 15,984,520 16,047,209 RGD:13792537
G Eef2 eukaryotic translation elongation factor 2 JBrowse link 7 11,401,501 11,406,771 RGD:10401630
RGD:13792537
G Efl1 elongation factor like GTPase 1 JBrowse link 1 144,601,425 144,740,634 RGD:1624291
RGD:13792537
G Eif2a eukaryotic translation initiation factor 2A JBrowse link 2 148,722,343 148,755,781 RGD:1624291
RGD:13792537
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha JBrowse link 6 102,048,372 102,073,041 RGD:1624291
RGD:13792537
G Eif3c eukaryotic translation initiation factor 3, subunit C JBrowse link 1 197,964,406 197,982,917 RGD:1624291
G Eif3k eukaryotic translation initiation factor 3, subunit K JBrowse link 1 87,927,142 87,937,033 RGD:1600115
G Eif5a eukaryotic translation initiation factor 5A JBrowse link 10 56,527,075 56,531,615 RGD:1600115
G Eif5a2 eukaryotic translation initiation factor 5A2 JBrowse link 2 115,336,646 115,354,203 RGD:1600115
G Eif6 eukaryotic translation initiation factor 6 JBrowse link 3 151,356,867 151,363,201 RGD:1624291
RGD:1600115
G Eri1 exoribonuclease 1 JBrowse link 16 60,307,148 60,327,237 RGD:1624291
RGD:1600115
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:1600115
RGD:1624291
G Gcn1 GCN1 activator of EIF2AK4 JBrowse link 12 46,728,684 46,789,696 RGD:1600115
G Gemin5 gem (nuclear organelle) associated protein 5 JBrowse link 10 43,552,260 43,599,241 RGD:1624291
G Gtpbp6 GTP binding protein 6 (putative) JBrowse link 12 52,637,000 52,640,869 RGD:13792537
G Guf1 GUF1 homolog, GTPase JBrowse link 14 62,609,484 62,628,862 RGD:1600115
G Hspa5 heat shock protein family A (Hsp70) member 5 JBrowse link 3 13,838,304 13,842,763 RGD:1624291
G Ighmbp2 immunoglobulin mu DNA binding protein 2 JBrowse link 1 218,509,274 218,531,922 RGD:1600115
RGD:1624291
G Impact impact RWD domain protein JBrowse link 18 4,325,872 4,346,734 RGD:1624291
G Letm1 leucine zipper and EF-hand containing transmembrane protein 1 JBrowse link 14 82,227,790 82,267,298 RGD:1600115
G Letm2 leucine zipper and EF-hand containing transmembrane protein 2 JBrowse link 16 71,241,335 71,261,841 RGD:1600115
G Letmd1 LETM1 domain containing 1 JBrowse link 7 142,106,364 142,119,900 RGD:1600115
G LOC108348180 signal recognition particle subunit SRP72-like JBrowse link 14 33,958,495 33,960,973 RGD:13792537
G Maip1 matrix AAA peptidase interacting protein 1 JBrowse link 9 64,095,978 64,103,908 RGD:13792537
G Mtif3 mitochondrial translational initiation factor 3 JBrowse link 12 9,846,355 9,857,548 RGD:13792537
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:1624291
G Mtrf1 mitochondrial translation release factor 1 JBrowse link 15 61,662,000 61,689,867 RGD:13792537
G Mtrf1l mitochondrial translational release factor 1-like JBrowse link 1 42,475,791 42,485,999 RGD:13792537
G Naa10 N(alpha)-acetyltransferase 10, NatA catalytic subunit JBrowse link X 156,863,655 156,868,950 RGD:1624291
G Naa15 N(alpha)-acetyltransferase 15, NatA auxiliary subunit JBrowse link 2 140,471,437 140,534,259 RGD:1624291
G Naa16 N(alpha)-acetyltransferase 16, NatA auxiliary subunit JBrowse link 15 61,597,054 61,655,665 RGD:1624291
G Ola1 Obg-like ATPase 1 JBrowse link 3 59,802,007 59,920,935 RGD:1600115
G Prmt3 protein arginine methyltransferase 3 JBrowse link 1 105,113,595 105,200,253 RGD:1600115
RGD:1624291
G Pttg1 PTTG1 regulator of sister chromatid separation, securin JBrowse link 10 29,014,332 29,026,088 RGD:2303787
G Pym1 PYM homolog 1, exon junction complex associated factor JBrowse link 7 3,172,798 3,193,994 RGD:1624291
G Rack1 receptor for activated C kinase 1 JBrowse link 10 34,149,717 34,155,198 RGD:1624291
RGD:13792537
RGD:1600115
G Rictor RPTOR independent companion of MTOR, complex 2 JBrowse link 2 56,013,898 56,105,818 RGD:1624291
G Rpn2 ribophorin II JBrowse link 3 153,398,373 153,445,633 RGD:2325971
G Rps21 ribosomal protein S21 JBrowse link 3 175,629,176 175,630,198 RGD:1600115
G Rpsa ribosomal protein SA JBrowse link 8 128,806,053 128,809,987 RGD:1624291
G Sbds SBDS, ribosome maturation factor JBrowse link 12 29,921,443 29,930,602 RGD:1624291
RGD:1600115
G Sec61a1 SEC61 translocon subunit alpha 1 JBrowse link 4 120,453,577 120,467,932 RGD:1624291
RGD:13792537
G Sec61a2 SEC61 translocon subunit alpha 2 JBrowse link 17 76,358,947 76,385,860 RGD:1624291
RGD:13792537
G Sec61b SEC61 translocon subunit beta JBrowse link 5 63,192,322 63,200,532 RGD:1624291
G Shfl shiftless antiviral inhibitor of ribosomal frameshifting JBrowse link 8 21,890,214 21,896,045 RGD:1600115
RGD:1624291
G Slfn14 schlafen family member 14 JBrowse link 10 70,493,340 70,504,810 RGD:1624291
G Spcs1 signal peptidase complex subunit 1 JBrowse link 16 7,080,389 7,081,957 RGD:1624291
G Srp19 signal recognition particle 19 JBrowse link 18 27,114,822 27,121,062 RGD:1624291
G Srp68 signal recognition particle 68 JBrowse link 10 105,123,324 105,150,080 RGD:1624291
G Srp72 signal recognition particle 72 JBrowse link 14 33,447,583 33,453,788 RGD:1624291
G Stau2 staufen double-stranded RNA binding protein 2 JBrowse link 5 2,257,910 2,497,429 RGD:10043152
G Ythdf1 YTH N(6)-methyladenosine RNA binding protein 1 JBrowse link 3 176,415,911 176,431,423 RGD:1624291
G Ythdf3 YTH N(6)-methyladenosine RNA binding protein 3 JBrowse link 2 100,677,388 100,711,365 RGD:1624291
G Zc3h12a zinc finger CCCH type containing 12A JBrowse link 5 143,111,342 143,120,131 RGD:1624291
G Zfp598 zinc finger protein 598 JBrowse link 10 14,035,114 14,047,100 RGD:1624291
RISC complex binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhx9 DExH-box helicase 9 JBrowse link 13 70,885,503 70,922,278 RGD:1624291
G Ran RAN, member RAS oncogene family JBrowse link 12 31,319,556 31,324,105 RGD:1624291
G Snd1 staphylococcal nuclease and tudor domain containing 1 JBrowse link 4 55,772,377 56,171,669 RGD:1624291
G Xpo5 exportin 5 JBrowse link 9 17,125,201 17,163,170 RGD:1624291
signal recognition particle binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC108348180 signal recognition particle subunit SRP72-like JBrowse link 14 33,958,495 33,960,973 RGD:1600115
G Srp68 signal recognition particle 68 JBrowse link 10 105,123,324 105,150,080 RGD:1624291
RGD:13792537
G Srp72 signal recognition particle 72 JBrowse link 14 33,447,583 33,453,788 RGD:1624291
G Srpra SRP receptor subunit alpha JBrowse link 8 36,410,683 36,416,766 RGD:13792537
snoRNP binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Prmt1 protein arginine methyltransferase 1 JBrowse link 1 100,971,132 100,980,411 RGD:1359066
snRNP binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Prpf31 pre-mRNA processing factor 31 JBrowse link 1 64,150,786 64,162,461 RGD:1624291
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 JBrowse link 3 137,138,082 137,147,575 RGD:10045883
U1 snRNP binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link 1 101,367,470 101,388,153 RGD:10448962
G Snrpa small nuclear ribonucleoprotein polypeptide A JBrowse link 1 83,999,670 84,008,429 RGD:10448962
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link 3 122,696,125 122,703,734 RGD:1601359
G Snrpc small nuclear ribonucleoprotein polypeptide C JBrowse link 20 7,409,401 7,427,581 RGD:10448962
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link 18 1,866,066 1,876,613 RGD:10448962
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link 1 80,057,140 80,059,990 RGD:10448962
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide JBrowse link 20 14,080,562 14,095,644 RGD:10448962
G Snrpe small nuclear ribonucleoprotein polypeptide E JBrowse link 13 50,252,707 50,258,951 RGD:10448962
G Snrpg small nuclear ribonucleoprotein polypeptide G JBrowse link 4 118,167,267 118,174,846 RGD:10448962
U2 snRNP binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link 3 122,696,125 122,703,734 RGD:1601359

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19528
    binding 15911
      protein-containing complex binding 1502
        ribonucleoprotein complex binding 158
          RISC complex binding 4
          polysome binding 6
          preribosome binding 1
          ribosomal large subunit binding 14
          ribosomal small subunit binding 15
          ribosome binding + 67
          signal recognition particle binding 4
          snRNP binding + 11
          snoRNP binding + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.