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ONTOLOGY REPORT - ANNOTATIONS


Term:ATP-dependent chromatin remodeling
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Accession:GO:0043044 term browser browse the term
Definition:Dynamic structural changes to eukaryotic chromatin that require energy from the hydrolysis of ATP, ranging from local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation, mediated by ATP-dependent chromatin-remodelling factors.
Synonyms:exact_synonym: ATP-dependent chromatin remodelling


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ATP-dependent chromatin remodeling term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07028349.1 RGD:13792537
G Actl6a actin-like 6A JBrowse link 2 119,112,776 119,128,870 RGD:13792537
G Actl6b actin-like 6B JBrowse link 12 22,194,595 22,211,107 RGD:13792537
G Actr5 actin related protein 5 JBrowse link 3 155,118,567 155,132,073 RGD:13792537
G Actr8 actin related protein 8 JBrowse link 16 6,047,977 6,062,586 RGD:13792537
G Arid1a AT-rich interaction domain 1A JBrowse link 5 151,904,687 151,977,973 RGD:1624291
RGD:13792537
G Arid1b AT-rich interaction domain 1B JBrowse link 1 45,923,119 46,232,301 RGD:13792537
G Cecr2 CECR2, histone acetyl-lysine reader JBrowse link 4 153,217,521 153,327,153 RGD:1624291
G Chd3 chromodomain helicase DNA binding protein 3 JBrowse link 10 55,943,467 55,970,417 RGD:1624291
G Chd8 chromodomain helicase DNA binding protein 8 JBrowse link 15 28,612,932 28,672,574 RGD:1624291
RGD:1600115
G Ercc6 ERCC excision repair 6, chromatin remodeling factor JBrowse link 16 8,734,028 8,804,610 RGD:1624291
G Ino80 INO80 complex ATPase subunit JBrowse link 3 111,186,371 111,266,542 RGD:13792537
G LOC103694314 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like JBrowse link 19 29,798,912 29,803,955 RGD:1600115
G Pbrm1 polybromo 1 JBrowse link 16 7,103,714 7,202,899 RGD:13792537
G Smarca1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 JBrowse link X 134,634,651 134,719,503 RGD:1624291
RGD:13792537
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 JBrowse link 1 244,615,811 244,783,736 RGD:13792537
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:634124
RGD:13792537
RGD:1600115
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 JBrowse link 19 30,936,703 30,969,454 RGD:1624291
RGD:13792537
G Smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1` JBrowse link 4 95,884,020 95,945,248 RGD:1624291
RGD:13792537
RGD:1600115
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 JBrowse link 8 118,206,678 118,326,264 RGD:13792537
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 JBrowse link 7 2,875,898 2,905,463 RGD:13792537
G Smarcd2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 JBrowse link 10 94,451,866 94,460,732 RGD:1600115
G Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 JBrowse link 10 87,116,827 87,138,890 RGD:1600115
G Srcap Snf2-related CREBBP activator protein JBrowse link 1 198,957,764 199,007,576 RGD:13792537
CENP-A containing nucleosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cenpp centromere protein P JBrowse link 17 15,429,526 15,603,197 RGD:1600115
G Hjurp Holliday junction recognition protein JBrowse link 9 95,347,739 95,362,228 RGD:1624291
G Itgb3bp integrin subunit beta 3 binding protein JBrowse link 5 118,476,410 118,541,928 RGD:1600115
G Mis18a MIS18 kinetochore protein A JBrowse link 11 30,880,231 30,893,262 RGD:1624291
RGD:13792537
G Nasp nuclear autoantigenic sperm protein JBrowse link 5 135,446,485 135,472,113 RGD:13792537
G Oip5 Opa interacting protein 5 JBrowse link 3 111,413,662 111,422,320 RGD:13792537
histone exchange term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actr6 actin related protein 6 JBrowse link 7 30,377,369 30,397,922 RGD:13792537
G Anp32e acidic nuclear phosphoprotein 32 family member E JBrowse link 2 198,040,573 198,057,005 RGD:1624291
RGD:13792537
RGD:1600115
G Dmap1 DNA methyltransferase 1-associated protein 1 JBrowse link 5 136,533,791 136,541,795 RGD:13792537
G Nasp nuclear autoantigenic sperm protein JBrowse link 5 135,446,485 135,472,113 RGD:1624291
RGD:1600115
G Ptma prothymosin alpha JBrowse link 9 93,545,396 93,549,436 RGD:1624291
G Rnf8 ring finger protein 8 JBrowse link 20 8,285,380 8,309,858 RGD:1624291
RGD:1600115
G Spty2d1 SPT2 chromatin protein domain containing 1 JBrowse link 1 103,115,280 103,129,438 RGD:1624291
RGD:13792537
G Srcap Snf2-related CREBBP activator protein JBrowse link 1 198,957,764 199,007,576 RGD:13792537
G Vps72 vacuolar protein sorting 72 homolog JBrowse link 2 196,277,961 196,289,549 RGD:1624291
RGD:13792537
G Znhit1 zinc finger, HIT-type containing 1 JBrowse link 12 22,726,643 22,732,917 RGD:13792537
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chd5 chromodomain helicase DNA binding protein 5 JBrowse link 5 169,519,212 169,572,059 RGD:1624291
RGD:1600115
G Fshr follicle stimulating hormone receptor JBrowse link 6 12,796,383 12,997,817 RGD:1624291
G H2bc1 H2B clustered histone 1 JBrowse link 17 43,423,111 43,423,580 RGD:1624291
RGD:1600115
G Piwil1 piwi-like RNA-mediated gene silencing 1 JBrowse link 12 31,608,641 31,629,961 RGD:1624291
G Psme4 proteasome activator subunit 4 JBrowse link 14 115,166,165 115,269,041 RGD:1624291
RGD:13792537
G Rnf8 ring finger protein 8 JBrowse link 20 8,285,380 8,309,858 RGD:1624291
RGD:1600115
G Sycp3 synaptonemal complex protein 3 JBrowse link 7 29,029,887 29,044,344 RGD:1624291
G Tnp1 transition protein 1 JBrowse link 9 80,294,837 80,295,446 RGD:1600115
RGD:1624291
G Tnp2 transition protein 2 JBrowse link 10 4,953,898 4,954,626 RGD:1600115
RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19439
    cellular process 18179
      cellular component organization or biogenesis 6367
        cellular component organization 6145
          chromatin organization 801
            chromatin remodeling 170
              ATP-dependent chromatin remodeling 46
                histone exchange + 23
Path 2
Term Annotations click to browse term
  biological_process 19439
    cellular process 18179
      cellular component organization or biogenesis 6367
        cellular component organization 6145
          organelle organization 3856
            chromosome organization 1198
              chromatin organization 801
                chromatin remodeling 170
                  ATP-dependent chromatin remodeling 46
                    histone exchange + 23
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.