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ONTOLOGY REPORT - ANNOTATIONS


Term:extracellular structure organization
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Accession:GO:0043062 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures in the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane, and also covers the host cell environment outside an intracellular parasite.
Synonyms:exact_synonym: extracellular structure organisation;   extracellular structure organization and biogenesis


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basement membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb1 laminin subunit beta 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:50,528,796...50,596,593
Ensembl chr 6:50,528,823...50,596,079
JBrowse link
G Lamb2 laminin subunit beta 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:117,268,335...117,280,517
Ensembl chr 8:117,268,337...117,280,517
JBrowse link
G Lamb3 laminin subunit beta 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:112,031,614...112,073,187
Ensembl chr13:112,031,594...112,073,186
JBrowse link
G Ntn4 netrin 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:34,533,543...34,649,330
Ensembl chr 7:34,533,543...34,649,481
JBrowse link
G Ntng1 netrin G1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:212,695,464...213,073,046
Ensembl chr 2:212,696,624...212,852,870
JBrowse link
G Ntng2 netrin G2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:7,742,511...7,800,834
Ensembl chr 3:7,742,531...7,796,385
JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 ISO MGI:MGI:3620600|MGI:MGI:3620601|MGI:MGI:3620603 (MGI:MGI:3618677|PMID:16467571) RGD PMID:16467571 MGI:MGI:3618677 NCBI chr12:22,716,421...22,726,982
Ensembl chr12:22,716,423...22,726,982
JBrowse link
G Ramp2 receptor activity modifying protein 2 ISO
ISS
(MGI:MGI:3772552|PMID:18097473)
GO_REF:0000024
RGD
UniProt
PMID:18097473 GO_REF:0000024, MGI:MGI:3772552 NCBI chr10:89,166,170...89,168,962
Ensembl chr10:89,166,890...89,168,965
JBrowse link
basement membrane disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cma1 chymase 1 ISO (PMID:27068509) RGD PMID:27068509 NCBI chr15:34,601,037...34,603,819
Ensembl chr15:34,601,037...34,603,819
JBrowse link
G Ctss cathepsin S ISO
IEA
(PMID:22952693)
GO_REF:0000107
(MGI:MGI:5553237|PMID:22952693)
RGD
Ensembl
PMID:22952693 GO_REF:0000107, MGI:MGI:5553237 NCBI chr 2:197,655,780...197,679,768
Ensembl chr 2:197,655,786...197,679,458
JBrowse link
G Hpn hepsin IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:16908524)
Ensembl
UniProt
RGD
PMID:16908524 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:89,534,112...89,549,575
Ensembl chr 1:89,534,106...89,543,967
JBrowse link
basement membrane organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cav1 caveolin 1 IEA
ISO
GO_REF:0000107
MGI:MGI:2180364 (MGI:MGI:2176684|PMID:11884617)
Ensembl
RGD
PMID:11884617 GO_REF:0000107, MGI:MGI:2176684 NCBI chr 4:44,597,123...44,630,206
Ensembl chr 4:44,597,123...44,630,200
JBrowse link
G Cav2 caveolin 2 IEA
ISO
GO_REF:0000107
MGI:MGI:2180372 (MGI:MGI:2176684|PMID:11884617)
Ensembl
RGD
PMID:11884617 GO_REF:0000107, MGI:MGI:2176684 NCBI chr 4:44,573,264...44,580,640
Ensembl chr 4:44,573,264...44,580,638
JBrowse link
G Col4a1 collagen type IV alpha 1 chain ISO (PMID:18160688), (PMID:19949034), (PMID:23065703) RGD PMID:18160688, PMID:19949034, PMID:23065703 NCBI chr16:83,522,162...83,632,153
Ensembl chr16:83,522,162...83,632,153
JBrowse link
G Dag1 dystroglycan 1 ISO MGI:MGI:1934902 (MGI:MGI:5470500|PMID:23217742) RGD PMID:23217742 MGI:MGI:5470500 NCBI chr 8:116,980,501...116,993,182
Ensembl chr 8:116,980,497...116,993,193
JBrowse link
G Ext1 exostosin glycosyltransferase 1 ISO
IEA
(MGI:MGI:5766597|PMID:26024086)
GO_REF:0000107
RGD
Ensembl
PMID:26024086 GO_REF:0000107, MGI:MGI:5766597 NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
JBrowse link
G Fermt1 fermitin family member 1 ISO (MGI:MGI:5571208|PMID:24681597) RGD PMID:24681597 MGI:MGI:5571208 NCBI chr 3:125,566,744...125,607,864
Ensembl chr 3:125,566,643...125,607,735
JBrowse link
G Flrt2 fibronectin leucine rich transmembrane protein 2 ISO
ISS
(MGI:MGI:4950310|PMID:21350012)
GO_REF:0000024
RGD
UniProt
PMID:21350012 GO_REF:0000024, MGI:MGI:4950310 NCBI chr 6:119,518,459...119,613,534
Ensembl chr 6:119,519,714...119,609,296
JBrowse link
G Fshr follicle stimulating hormone receptor ISO MGI:MGI:2384087 (MGI:MGI:1313058|PMID:9811848) RGD PMID:9811848 MGI:MGI:1313058 NCBI chr 6:12,796,383...12,997,817
Ensembl chr 6:12,796,383...12,997,817
JBrowse link
G Gas2 growth arrest-specific 2 ISO MGI:MGI:6187669 (MGI:MGI:6102554|PMID:27734842) RGD PMID:27734842 MGI:MGI:6102554 NCBI chr 1:107,234,389...107,363,624
Ensembl chr 1:107,262,659...107,363,788
JBrowse link
G Itgb1 integrin subunit beta 1 IEA
ISO
GO_REF:0000107
(MGI:MGI:5571208|PMID:24681597)
Ensembl
RGD
PMID:24681597 GO_REF:0000107, MGI:MGI:5571208 NCBI chr19:61,677,512...61,725,537
Ensembl chr19:61,677,542...61,725,535
JBrowse link
G Mmp11 matrix metallopeptidase 11 ISO MGI:MGI:2387934 (MGI:MGI:3822602|PMID:18622425) RGD PMID:18622425 MGI:MGI:3822602 NCBI chr20:13,670,051...13,678,834
Ensembl chr20:13,670,066...13,678,089
JBrowse link
G Pmp22 peripheral myelin protein 22 ISO MGI:MGI:3614822 (MGI:MGI:3613258|PMID:16436605) RGD PMID:16436605 MGI:MGI:3613258 NCBI chr10:49,538,588...49,568,583
Ensembl chr10:49,538,588...49,568,583
JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A ISO
IEA
MGI:MGI:3608888 (MGI:MGI:4849883|PMID:21069829)
GO_REF:0000107
RGD
Ensembl
PMID:21069829 GO_REF:0000107, MGI:MGI:4849883 NCBI chr 1:213,606,599...213,612,905
Ensembl chr 1:213,606,599...213,612,904
JBrowse link
G Spint2 serine peptidase inhibitor, Kunitz type, 2 ISO MGI:MGI:2156187 (MGI:MGI:4360135|PMID:19592578) RGD PMID:19592578 MGI:MGI:4360135 NCBI chr 1:87,199,373...87,221,826
Ensembl chr 1:87,199,313...87,221,892
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:MGI:2183192 (MGI:MGI:3610667|PMID:16186342) RGD PMID:16186342 MGI:MGI:3610667 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan ISO
IEA
MGI:MGI:1856465 (MGI:MGI:2664273|PMID:3070812)
GO_REF:0000107
RGD
Ensembl
PMID:3070812 GO_REF:0000107, MGI:MGI:2664273 NCBI chr 1:140,762,758...140,824,441
Ensembl chr 1:140,762,758...140,824,441
JBrowse link
G Adamts14 ADAM metallopeptidase with thrombospondin type 1 motif, 14 ISO (MGI:MGI:2158963|PMID:11741898) RGD PMID:11741898 MGI:MGI:2158963 NCBI chr20:30,812,319...30,888,936
Ensembl chr20:30,812,353...30,888,751
JBrowse link
G Adamts2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 ISO MGI:MGI:2388161 (MGI:MGI:3621082|PMID:16556917) RGD PMID:16556917 MGI:MGI:3621082 NCBI chr10:36,098,051...36,304,416
Ensembl chr10:36,098,051...36,304,409
JBrowse link
G Anxa2 annexin A2 ISO MGI:MGI:3028929 (MGI:MGI:3027337|PMID:14702107) RGD PMID:14702107 MGI:MGI:3027337 NCBI chr 8:75,687,134...75,723,589
Ensembl chr 8:75,687,100...75,723,594
JBrowse link
G Atp7a ATPase copper transporting alpha ISO MGI:MGI:1856097|MGI:MGI:1856101|MGI:MGI:1856102|MGI:MGI:3588774 (MGI:MGI:3616522|PMID:16338116), (MGI:MGI:53875|PMID:4808708), (MGI:MGI:54357|PMID:20889), (MGI:MGI:83737|PMID:8096378), (MGI:MGI:83811|PMID:8895222) RGD PMID:20889, PMID:4808708, PMID:8096378, PMID:8895222, PMID:16338116 MGI:MGI:3616522, MGI:MGI:53875, MGI:MGI:54357, MGI:MGI:83737, MGI:MGI:83811 NCBI chr  X:77,076,085...77,193,644
Ensembl chr  X:77,076,106...77,193,644
JBrowse link
G Col11a1 collagen type XI alpha 1 chain TAS
ISO
MGI:MGI:1856399|MGI:MGI:88457 (MGI:MGI:2664273|PMID:3070812), (MGI:MGI:3694610|PMID:17029294), (MGI:MGI:3766851|PMID:17683922), (MGI:MGI:5014156|PMID:21467034), (MGI:MGI:53676|PMID:4100752), (MGI:MGI:53732|PMID:4110409), (MGI:MGI:70833|PMID:7859283) RGD PMID:3070812, PMID:4100752, PMID:4110409, PMID:7859283, PMID:17029294, PMID:17683922, PMID:21467034, PMID:12962540 MGI:MGI:2664273, MGI:MGI:3694610, MGI:MGI:3766851, MGI:MGI:5014156, MGI:MGI:53676, MGI:MGI:53732, MGI:MGI:70833, RGD:1300046 NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523
JBrowse link
G Col11a2 collagen type XI alpha 2 chain ISO
IBA
(PMID:9188673)
PMID:21873635
MGI:MGI:2154689 (MGI:MGI:1350441|PMID:10581026), (MGI:MGI:2151300|PMID:11668593)
RGD PMID:9188673, PMID:10581026, PMID:11668593, PMID:21873635 MGI:MGI:1350441, MGI:MGI:2151300, RGD:13792537 NCBI chr20:3,829,324...3,859,022
Ensembl chr20:3,830,164...3,859,018
JBrowse link
G Col13a1 collagen type XIII alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:31,456,502...31,598,360
Ensembl chr20:31,456,852...31,598,118
JBrowse link
G Col14a1 collagen type XIV alpha 1 chain ISO MGI:MGI:3846440 (MGI:MGI:5444801|PMID:22906538) RGD PMID:22906538 MGI:MGI:5444801 NCBI chr 7:95,054,877...95,274,073
Ensembl chr 7:95,074,236...95,273,298
JBrowse link
G Col1a1 collagen type I alpha 1 chain ISO (PMID:14976317), (PMID:15095409), (PMID:17211858), (PMID:18375391) RGD PMID:14976317, PMID:15095409, PMID:17211858, PMID:18375391 NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
JBrowse link
G Col1a2 collagen type I alpha 2 chain ISO (PMID:17211858), (PMID:18375391) RGD PMID:17211858, PMID:18375391 NCBI chr 4:31,534,225...31,569,152
Ensembl chr 4:31,534,225...31,569,151
JBrowse link
G Col2a1 collagen type II alpha 1 chain ISO
IBA
IEA
(PMID:1429602)
PMID:21873635
MGI:MGI:1857275|MGI:MGI:2152978 (MGI:MGI:1315157|PMID:9832566), (MGI:MGI:1327515|PMID:9915573), (MGI:MGI:2664273|PMID:3070812), (MGI:MGI:3618042|PMID:11171689), (MGI:MGI:55057|PMID:7276808), (MGI:MGI:77563|PMID:7590256), (MGI:MGI:84914|PMID:8989518), (MGI:MGI:85592|PMID:9022054)
GO_REF:0000107
RGD
Ensembl
PMID:1429602, PMID:3070812, PMID:7276808, PMID:7590256, PMID:8989518, PMID:9022054, PMID:9832566, PMID:9915573, PMID:11171689, PMID:21873635 GO_REF:0000107, MGI:MGI:1315157, MGI:MGI:1327515, MGI:MGI:2664273, MGI:MGI:3618042, MGI:MGI:55057, MGI:MGI:77563, MGI:MGI:84914, MGI:MGI:85592, RGD:13792537 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
JBrowse link
G Col3a1 collagen type III alpha 1 chain ISO MGI:MGI:1857431 (MGI:MGI:86656|PMID:9050868)
(PMID:7546986), (PMID:9036918)
RGD PMID:7546986, PMID:9036918, PMID:9050868 MGI:MGI:86656 NCBI chr 9:52,023,295...52,059,221
Ensembl chr 9:52,023,295...52,059,217
JBrowse link
G Col5a1 collagen type V alpha 1 chain IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
MGI:MGI:3664598|MGI:MGI:88446 (MGI:MGI:3663234|PMID:16492673), (MGI:MGI:3664596|PMID:15383546), (MGI:MGI:3694610|PMID:17029294), (MGI:MGI:5014156|PMID:21467034)
(PMID:11278977), (PMID:15095409), (PMID:9683580)
Ensembl
RGD
PMID:9683580, PMID:11278977, PMID:15095409, PMID:15383546, PMID:16492673, PMID:17029294, PMID:21467034, PMID:21873635 GO_REF:0000107, MGI:MGI:3663234, MGI:MGI:3664596, MGI:MGI:3694610, MGI:MGI:5014156, RGD:13792537 NCBI chr 3:6,430,180...6,581,010
Ensembl chr 3:6,430,201...6,578,882
JBrowse link
G Col5a2 collagen type V alpha 2 chain ISO (PMID:9425231)
(MGI:MGI:3047505|PMID:15199158)
RGD PMID:9425231, PMID:15199158 MGI:MGI:3047505 NCBI chr 9:52,091,088...52,238,735
Ensembl chr 9:52,092,511...52,238,564
JBrowse link
G Comp cartilage oligomeric matrix protein ISO
IEA
MGI:MGI:2180787|MGI:MGI:5550566 (MGI:MGI:4412116|PMID:19808781), (MGI:MGI:5568656|PMID:24312420), (MGI:MGI:5922181|PMID:26746240)
GO_REF:0000107
RGD
Ensembl
PMID:19808781, PMID:24312420, PMID:26746240 GO_REF:0000107, MGI:MGI:4412116, MGI:MGI:5568656, MGI:MGI:5922181 NCBI chr16:20,798,437...20,807,070
Ensembl chr16:20,798,437...20,807,070
JBrowse link
G Crtapl1 cartilage associated protein-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:122,394,451...122,402,198
Ensembl chr 8:122,417,532...122,421,384
JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5544856|PMID:23979599)
Ensembl
UniProt
RGD
PMID:23979599 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5544856 NCBI chr 6:2,308,179...2,316,739
Ensembl chr 6:2,307,808...2,316,722
JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 ISO (MGI:MGI:5318020|PMID:19900459) RGD PMID:19900459 MGI:MGI:5318020 NCBI chr13:88,311,639...88,436,561
Ensembl chr13:88,317,145...88,436,789
JBrowse link
G Dpt dermatopontin ISO
IBA
MGI:MGI:2387341 (MGI:MGI:2386368|PMID:12230512), (MGI:MGI:3655897|PMID:16877395)
PMID:21873635
RGD PMID:12230512, PMID:16877395, PMID:21873635 MGI:MGI:2386368, MGI:MGI:3655897, RGD:13792537 NCBI chr13:83,073,307...83,102,404
Ensembl chr13:83,073,544...83,102,401
JBrowse link
G Ext1 exostosin glycosyltransferase 1 ISO
IEA
(MGI:MGI:6406768|PMID:19850926)
GO_REF:0000107
RGD
Ensembl
PMID:19850926 GO_REF:0000107, MGI:MGI:6406768 NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
JBrowse link
G Fkbp10 FKBP prolyl isomerase 10 ISO
IEA
MGI:MGI:5432211 (MGI:MGI:5585367|PMID:24777781), (MGI:MGI:6114458|PMID:28206698)
GO_REF:0000107
RGD
Ensembl
PMID:24777781, PMID:28206698 GO_REF:0000107, MGI:MGI:5585367, MGI:MGI:6114458 NCBI chr10:88,326,337...88,338,199
Ensembl chr10:88,326,080...88,338,207
JBrowse link
G Fmod fibromodulin IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr13:50,874,886...50,885,503
Ensembl chr13:50,873,605...50,885,563
JBrowse link
G Foxc1 forkhead box C1 ISO MGI:MGI:1856705 (MGI:MGI:1355577|PMID:10767326) RGD PMID:10767326 MGI:MGI:1355577 NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
JBrowse link
G Foxc2 forkhead box C2 ISO MGI:MGI:1857865 (MGI:MGI:1355577|PMID:10767326) RGD PMID:10767326 MGI:MGI:1355577 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist ISO (PMID:15539560) RGD PMID:15539560 NCBI chr 3:105,203,309...105,214,989
Ensembl chr 3:105,203,309...105,214,989
JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta ISO MGI:MGI:2158463 (MGI:MGI:1353150|PMID:10660670) RGD PMID:10660670 MGI:MGI:1353150 NCBI chr 3:12,608,748...12,686,937
Ensembl chr 3:12,609,574...12,686,869
JBrowse link
G Lox lysyl oxidase IDA
IBA
ISO
IMP
PMID:21873635
MGI:MGI:3610732 (MGI:MGI:3604822|PMID:16192629), (MGI:MGI:5766417|PMID:26700732)
RGD PMID:16192629, PMID:26700732, PMID:16804742, PMID:21873635, PMID:16432278 MGI:MGI:3604822, MGI:MGI:5766417, RGD:1600668, RGD:13792537, RGD:1600669 NCBI chr18:47,500,320...47,577,819
Ensembl chr18:47,500,330...47,577,819
JBrowse link
G Loxl1 lysyl oxidase-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:63,067,757...63,092,124
Ensembl chr 8:63,067,300...63,092,009
JBrowse link
G Loxl2 lysyl oxidase-like 2 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:21835952)
Ensembl
UniProt
RGD
PMID:21835952, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr15:51,276,022...51,365,238
Ensembl chr15:51,303,909...51,365,234
JBrowse link
G Loxl3 lysyl oxidase-like 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:113,866,782...113,883,713
Ensembl chr 4:113,866,804...113,883,477
JBrowse link
G Loxl4 lysyl oxidase-like 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:261,833,365...261,853,599
Ensembl chr 1:261,835,992...261,853,495
JBrowse link
G Lum lumican IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:38,820,058...38,826,862
Ensembl chr 7:38,819,771...38,826,862
JBrowse link
G Mia3 MIA SH3 domain ER export factor 3 ISO MGI:MGI:5007248 (MGI:MGI:5008683|PMID:21606205) RGD PMID:21606205 MGI:MGI:5008683 NCBI chr13:101,727,434...101,770,127
Ensembl chr13:101,727,935...101,761,541
JBrowse link
G Mkx mohawk homeobox ISO MGI:MGI:5287572 (MGI:MGI:5287220|PMID:20696843) RGD PMID:20696843 MGI:MGI:5287220 NCBI chr17:60,537,615...60,553,284
Ensembl chr17:60,537,935...60,549,750
JBrowse link
G Mmp11 matrix metallopeptidase 11 ISO MGI:MGI:2387934 (MGI:MGI:3822602|PMID:18622425) RGD PMID:18622425 MGI:MGI:3822602 NCBI chr20:13,670,051...13,678,834
Ensembl chr20:13,670,066...13,678,089
JBrowse link
G Nf1 neurofibromin 1 ISO
ISS
IEA
MGI:MGI:1857444 (MGI:MGI:1339276|PMID:10383727)
GO_REF:0000024
GO_REF:0000107
RGD
HGNC
Ensembl
PMID:10383727 GO_REF:0000024, GO_REF:0000107, MGI:MGI:1339276 NCBI chr10:66,732,460...66,928,706
Ensembl chr10:66,690,133...66,928,903
JBrowse link
G Optc opticin ISO (MGI:MGI:6148629|PMID:29323130) RGD PMID:29323130 MGI:MGI:6148629 NCBI chr13:50,735,509...50,748,908
Ensembl chr13:50,735,599...50,746,354
JBrowse link
G P3h1 prolyl 3-hydroxylase 1 ISO MGI:MGI:4830452 (MGI:MGI:4830073|PMID:20363744) RGD PMID:20363744 MGI:MGI:4830073 NCBI chr 5:138,279,597...138,294,280
Ensembl chr 5:138,279,506...138,294,262
JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 ISO
IBA
ISS
(MGI:MGI:5779580|PMID:27119146)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:27119146, PMID:21873635 GO_REF:0000024, MGI:MGI:5779580, RGD:13792537 NCBI chr10:88,318,231...88,325,326
Ensembl chr10:88,318,817...88,325,326
JBrowse link
G P4ha1 prolyl 4-hydroxylase subunit alpha 1 ISO MGI:MGI:3706369 (MGI:MGI:3706231|PMID:17135260) RGD PMID:17135260 MGI:MGI:3706231 NCBI chr20:28,920,616...28,972,576
Ensembl chr20:28,920,616...28,971,966
JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 ISO MGI:MGI:3620600|MGI:MGI:3620603 (MGI:MGI:3618677|PMID:16467571) RGD PMID:16467571 MGI:MGI:3618677 NCBI chr12:22,716,421...22,726,982
Ensembl chr12:22,716,423...22,726,982
JBrowse link
G Pxdn peroxidasin ISO (PMID:22842973) RGD PMID:22842973 NCBI chr 6:48,866,496...48,982,368
Ensembl chr 6:48,866,601...48,980,340
JBrowse link
G Scx scleraxis bHLH transcription factor ISO (MGI:MGI:4413438|PMID:18802027) RGD PMID:18802027 MGI:MGI:4413438 NCBI chr 7:117,519,075...117,521,093
Ensembl chr 7:117,519,075...117,521,093
JBrowse link
G Serpinf2 serpin family F member 2 ISO (MGI:MGI:5306295|PMID:17958745) RGD PMID:17958745 MGI:MGI:5306295 NCBI chr10:62,264,247...62,272,353
Ensembl chr10:62,264,788...62,273,119
JBrowse link
G Serpinh1 serpin family H member 1 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
MGI:MGI:2176070|MGI:MGI:2385994|MGI:MGI:5505265 (MGI:MGI:1890100|PMID:10995453), (MGI:MGI:5494537|PMID:22492985)
Ensembl
RGD
PMID:10995453, PMID:22492985, PMID:21873635 GO_REF:0000107, MGI:MGI:1890100, MGI:MGI:5494537, RGD:13792537 NCBI chr 1:164,301,010...164,308,306
Ensembl chr 1:164,301,010...164,308,317
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 ISO MGI:MGI:3664776 (MGI:MGI:3839034|PMID:19079247) RGD PMID:19079247 MGI:MGI:3839034 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO
ISS
(PMID:16891397)
GO_REF:0000024
RGD
UniProt
PMID:16891397 GO_REF:0000024 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 ISO MGI:MGI:2388050 (MGI:MGI:3588906|PMID:15993878) RGD PMID:15993878 MGI:MGI:3588906 NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
JBrowse link
G Tnxb tenascin XB ISO MGI:MGI:2181283|MGI:MGI:3053791 (MGI:MGI:2177884|PMID:11925569), (MGI:MGI:3052887|PMID:15194424) RGD PMID:11925569, PMID:15194424 MGI:MGI:2177884, MGI:MGI:3052887
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog ISO
IEA
MGI:MGI:3699244|MGI:MGI:5816979 (MGI:MGI:5804716|PMID:27435297)
GO_REF:0000107
RGD
Ensembl
PMID:27435297 GO_REF:0000107, MGI:MGI:5804716 NCBI chr 6:111,271,283...111,296,013
Ensembl chr 6:111,271,240...111,295,994
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated ISO MGI:MGI:3699244|MGI:MGI:5770088 (MGI:MGI:5804716|PMID:27435297) RGD PMID:27435297 MGI:MGI:5804716 NCBI chr 1:142,060,955...142,083,955
Ensembl chr 1:142,060,955...142,083,953
JBrowse link
elastic fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha ISO MGI:MGI:1856097|MGI:MGI:3588774 (MGI:MGI:3616522|PMID:16338116), (MGI:MGI:54141|PMID:937819), (MGI:MGI:54357|PMID:20889), (MGI:MGI:63907|PMID:3385878) RGD PMID:20889, PMID:937819, PMID:3385878, PMID:16338116 MGI:MGI:3616522, MGI:MGI:54141, MGI:MGI:54357, MGI:MGI:63907 NCBI chr  X:77,076,085...77,193,644
Ensembl chr  X:77,076,106...77,193,644
JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 ISO MGI:MGI:4410301 (MGI:MGI:4397710|PMID:19855011) RGD PMID:19855011 MGI:MGI:4397710 NCBI chr 1:220,853,695...220,861,420
Ensembl chr 1:220,854,403...220,861,420
JBrowse link
G Eln elastin TAS RGD PMID:10090127 RGD:731206 NCBI chr12:24,978,478...25,021,864
Ensembl chr12:24,978,483...25,021,863
JBrowse link
G Emilin1 elastin microfibril interfacer 1 ISO (MGI:MGI:5605894|PMID:25056700) RGD PMID:25056700 MGI:MGI:5605894 NCBI chr 6:26,821,249...26,829,013
Ensembl chr 6:26,821,255...26,828,972
JBrowse link
G Fbln5 fibulin 5 ISO
IBA
ISS
(PMID:17035250)
PMID:21873635
(MGI:MGI:2681470|PMID:11805835), (MGI:MGI:2681471|PMID:11805834)
GO_REF:0000024
RGD
UniProt
PMID:11805834, PMID:11805835, PMID:17035250, PMID:21873635 GO_REF:0000024, MGI:MGI:2681470, MGI:MGI:2681471, RGD:13792537 NCBI chr 6:125,644,797...125,723,957
Ensembl chr 6:125,644,804...125,723,944
JBrowse link
G LOC102553715 microfibril-associated glycoprotein 4-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:49,000,914...49,003,935
Ensembl chr10:49,000,973...49,003,931
JBrowse link
G Lox lysyl oxidase IMP
ISO
MGI:MGI:3610732 (MGI:MGI:3604822|PMID:16192629), (MGI:MGI:3609311|PMID:12417550), (MGI:MGI:5616293|PMID:23413430) RGD PMID:12417550, PMID:16192629, PMID:23413430, PMID:16432278 MGI:MGI:3604822, MGI:MGI:3609311, MGI:MGI:5616293, RGD:1600669 NCBI chr18:47,500,320...47,577,819
Ensembl chr18:47,500,330...47,577,819
JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:221,099,155...221,116,096
Ensembl chr 1:221,099,998...221,116,096
JBrowse link
G Mfap4 microfibril associated protein 4 ISO
IBA
(PMID:22355679)
PMID:21873635
RGD PMID:22355679, PMID:21873635 RGD:13792537 NCBI chr10:47,765,463...47,768,484
Ensembl chr10:47,765,432...47,768,483
JBrowse link
G Myh11 myosin heavy chain 11 IEA
ISO
GO_REF:0000107
(PMID:16444274)
Ensembl
RGD
PMID:16444274 GO_REF:0000107 NCBI chr10:764,421...859,184
Ensembl chr10:764,421...859,184
JBrowse link
G Thsd4 thrombospondin type 1 domain containing 4 ISO (MGI:MGI:4453293|PMID:19940141) RGD PMID:19940141 MGI:MGI:4453293 NCBI chr 8:64,811,940...65,413,498
Ensembl chr 8:64,817,191...65,003,296
JBrowse link
G Tnxb tenascin XB ISO (PMID:15102077) RGD PMID:15102077
extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a2 collagen type I alpha 2 chain ISO MGI:MGI:1856327 (MGI:MGI:5468210|PMID:22910579) RGD PMID:22910579 MGI:MGI:5468210 NCBI chr 4:31,534,225...31,569,152
Ensembl chr 4:31,534,225...31,569,151
JBrowse link
G Fkbp10 FKBP prolyl isomerase 10 ISO
IEA
(MGI:MGI:6094666|PMID:28774593)
GO_REF:0000107
RGD
Ensembl
PMID:28774593 GO_REF:0000107, MGI:MGI:6094666 NCBI chr10:88,326,337...88,338,199
Ensembl chr10:88,326,080...88,338,207
JBrowse link
G Gas6 growth arrest specific 6 IEP PMID:18374201 UniProt PMID:18374201 RGD:8554638 NCBI chr16:81,213,364...81,243,824
Ensembl chr16:81,213,364...81,243,757
JBrowse link
G Gpm6b glycoprotein m6b IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:21638316)
Ensembl
UniProt
RGD
PMID:21638316 GO_REF:0000024, GO_REF:0000107 NCBI chr  X:29,604,607...29,751,174
Ensembl chr  X:29,607,075...29,648,403
JBrowse link
G Hapln2 hyaluronan and proteoglycan link protein 2 ISO
IEA
MGI:MGI:4437572 (MGI:MGI:4437139|PMID:20181608)
GO_REF:0000107
RGD
Ensembl
PMID:20181608 GO_REF:0000107, MGI:MGI:4437139 NCBI chr 2:187,395,104...187,402,076
Ensembl chr 2:187,396,349...187,401,786
JBrowse link
G Has1 hyaluronan synthase 1 ISO
IBA
(MGI:MGI:5508296|PMID:10455188)
PMID:21873635
RGD PMID:10455188, PMID:21873635 MGI:MGI:5508296, RGD:13792537 NCBI chr 1:59,720,612...59,732,409
Ensembl chr 1:59,720,612...59,732,409
JBrowse link
G Has2 hyaluronan synthase 2 ISO
IBA
ISS
(MGI:MGI:5508296|PMID:10455188)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:10455188, PMID:21873635 GO_REF:0000024, MGI:MGI:5508296, RGD:13792537 NCBI chr 7:96,438,046...96,464,049
Ensembl chr 7:96,438,046...96,464,049
JBrowse link
G Has3 hyaluronan synthase 3 ISO
IBA
(MGI:MGI:5508296|PMID:10455188)
PMID:21873635
RGD PMID:10455188, PMID:21873635 MGI:MGI:5508296, RGD:13792537 NCBI chr19:39,063,298...39,077,745
Ensembl chr19:39,063,998...39,077,722
JBrowse link
G Qsox1 quiescin sulfhydryl oxidase 1 ISO (PMID:23867277) RGD PMID:23867277 NCBI chr13:73,423,396...73,460,890
Ensembl chr13:73,423,397...73,460,935
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 ISO
IEA
MGI:MGI:1856877 (MGI:MGI:5468210|PMID:22910579)
GO_REF:0000107
RGD
Ensembl
PMID:22910579 GO_REF:0000107, MGI:MGI:5468210 NCBI chr19:38,237,963...38,321,572
Ensembl chr19:38,237,965...38,321,528
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO
ISS
(PMID:19734317)
GO_REF:0000024
(MGI:MGI:4820704|PMID:19734317)
RGD
UniProt
PMID:19734317 GO_REF:0000024, MGI:MGI:4820704 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccn2 cellular communication network factor 2 IMP positive regulation RGD PMID:18613219 RGD:2314619 NCBI chr 1:21,851,657...21,854,773
Ensembl chr 1:21,851,660...21,854,773
JBrowse link
G Creb3l1 cAMP responsive element binding protein 3-like 1 ISO
ISS
(MGI:MGI:4438316|PMID:19767743)
GO_REF:0000024
RGD
UniProt
PMID:19767743 GO_REF:0000024, MGI:MGI:4438316 NCBI chr 3:80,892,433...80,933,283
Ensembl chr 3:80,892,435...80,933,283
JBrowse link
G Eng endoglin IMP RGD PMID:15539634 RGD:1601032 NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
JBrowse link
G Tmem38b transmembrane protein 38B ISO MGI:MGI:1921416 (MGI:MGI:6141091|PMID:27188440) RGD PMID:27188440 MGI:MGI:6141091 NCBI chr 5:70,639,156...70,675,055
Ensembl chr 5:70,639,156...70,675,054
JBrowse link
extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Capg capping actin protein, gelsolin like NOT ISO (PMID:24236012) RGD PMID:24236012 NCBI chr 4:100,395,693...100,419,447
Ensembl chr 4:100,407,658...100,419,446
JBrowse link
G Cma1 chymase 1 ISO (PMID:27068509) RGD PMID:27068509 NCBI chr15:34,601,037...34,603,819
Ensembl chr15:34,601,037...34,603,819
JBrowse link
G Eng endoglin ISO (PMID:18223685) RGD PMID:18223685 NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
JBrowse link
G Exoc8 exocyst complex component 8 ISO (PMID:24344185) RGD PMID:24344185 NCBI chr19:57,647,305...57,649,794
Ensembl chr19:57,647,291...57,649,827
JBrowse link
G Flot1 flotillin 1 ISO (PMID:21119006) RGD PMID:21119006 NCBI chr20:3,427,890...3,438,418
Ensembl chr20:3,427,880...3,438,396
JBrowse link
G Gsn gelsolin NOT ISO (PMID:24236012) RGD PMID:24236012 NCBI chr 3:14,456,106...14,508,922
Ensembl chr 3:14,467,330...14,508,911
JBrowse link
G Kif9 kinesin family member 9 ISO (PMID:21119006) RGD PMID:21119006 NCBI chr 8:118,737,739...118,795,190
Ensembl chr 8:118,744,229...118,794,992
JBrowse link
G Klk4 kallikrein-related peptidase 4 ISO
IBA
MGI:MGI:4355346 (MGI:MGI:5502300|PMID:22243248)
PMID:21873635
RGD PMID:22243248, PMID:21873635 MGI:MGI:5502300, RGD:13792537 NCBI chr 1:99,828,944...99,834,642
Ensembl chr 1:99,829,351...99,834,216
JBrowse link
G Klk5 kallikrein related-peptidase 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:99,781,291...99,793,745
Ensembl chr 1:99,781,237...99,786,330
JBrowse link
G Lamc1 laminin subunit gamma 1 ISO (PMID:15159456) RGD PMID:15159456 NCBI chr13:70,656,727...70,783,515
Ensembl chr13:70,658,707...70,783,515
JBrowse link
G Lcp1 lymphocyte cytosolic protein 1 ISO (PMID:24236012) RGD PMID:24236012 NCBI chr15:57,170,566...57,277,811
Ensembl chr15:57,221,292...57,277,811
JBrowse link
G Mmp13 matrix metallopeptidase 13 IEA
ISO
ISS
GO_REF:0000107
(PMID:8576151), (PMID:9065415)
GO_REF:0000024
(MGI:MGI:3771509|PMID:17987127)
Ensembl
RGD
UniProt
PMID:8576151, PMID:9065415, PMID:17987127 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3771509 NCBI chr 8:5,522,739...5,533,018
Ensembl chr 8:5,522,739...5,533,018
JBrowse link
G Mmp20 matrix metallopeptidase 20 ISO MGI:MGI:2447874 (MGI:MGI:5502300|PMID:22243248) RGD PMID:22243248 MGI:MGI:5502300 NCBI chr 8:5,823,147...5,875,555
Ensembl chr 8:5,833,359...5,875,232
JBrowse link
G Noxo1 NADPH oxidase organizer 1 ISO (PMID:19755710) RGD PMID:19755710 NCBI chr10:14,062,331...14,066,918
Ensembl chr10:14,062,331...14,066,918
JBrowse link
G Plg plasminogen ISO (PMID:14699093) RGD PMID:14699093 NCBI chr 1:48,521,828...48,563,895
Ensembl chr 1:48,521,772...48,563,776
JBrowse link
G Sh3pxd2b SH3 and PX domains 2B ISO (PMID:19755710) RGD PMID:19755710 NCBI chr10:17,209,152...17,296,449
Ensembl chr10:17,209,212...17,291,876
JBrowse link
G Tpsab1 tryptase alpha/beta 1 ISO (PMID:27068509) RGD PMID:27068509 NCBI chr10:14,701,253...14,703,668
Ensembl chr10:14,701,253...14,703,668
JBrowse link
G Washc1 WASH complex subunit 1 ISO (PMID:24344185) RGD PMID:24344185 NCBI chr 9:113,918,914...113,936,861
Ensembl chr 9:113,918,858...113,936,860
JBrowse link
G Wdr72 WD repeat domain 72 ISO MGI:MGI:5913851 (MGI:MGI:5906533|PMID:26247047) RGD PMID:26247047 MGI:MGI:5906533 NCBI chr 8:80,965,734...81,125,710
Ensembl chr 8:80,965,255...81,039,246
JBrowse link
extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07043892.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:46,164,123...46,167,950 JBrowse link
G AABR07049085.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:104,362,971...104,753,863 JBrowse link
G AABR07060833.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:96,562,725...96,564,611 JBrowse link
G AABR07069011.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:5,199,426...5,202,360 JBrowse link
G Abi3bp ABI family member 3 binding protein ISO (MGI:MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:MGI:3807344 NCBI chr11:46,206,932...46,422,791
Ensembl chr11:46,208,075...46,369,577
JBrowse link
G Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:25,342,119...25,350,938
Ensembl chr11:25,342,126...25,350,974
JBrowse link
G Adamts10 ADAM metallopeptidase with thrombospondin type 1 motif, 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:18,409,147...18,439,012
Ensembl chr 7:18,409,147...18,439,012
JBrowse link
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:61,039,072...61,340,687
Ensembl chr 2:61,039,053...61,340,697
JBrowse link
G Adamts13 ADAM metallopeptidase with thrombospondin type 1 motif, 13 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:5,519,921...5,558,390
Ensembl chr 3:5,519,990...5,558,166
JBrowse link
G Adamts14 ADAM metallopeptidase with thrombospondin type 1 motif, 14 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:30,812,319...30,888,936
Ensembl chr20:30,812,353...30,888,751
JBrowse link
G Adamts15 ADAM metallopeptidase with thrombospondin type 1 motif, 15 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:31,977,001...32,000,378
Ensembl chr 8:31,977,001...32,000,378
JBrowse link
G Adamts16 ADAM metallopeptidase with thrombospondin type 1 motif, 16 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:35,067,268...35,200,530
Ensembl chr 1:35,067,490...35,198,939
JBrowse link
G Adamts17 ADAM metallopeptidase with thrombospondin type 1 motif, 17 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:127,802,872...128,126,764
Ensembl chr 1:127,802,978...128,124,171
JBrowse link
G Adamts18 ADAM metallopeptidase with thrombospondin type 1 motif, 18 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:46,005,055...46,167,912
Ensembl chr19:46,005,277...46,101,250
JBrowse link
G Adamts19 ADAM metallopeptidase with thrombospondin type 1 motif, 19 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:53,915,807...54,099,856
Ensembl chr18:53,915,807...54,099,120
JBrowse link
G Adamts2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:36,098,051...36,304,416
Ensembl chr10:36,098,051...36,304,409
JBrowse link
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 ISO
IBA
(MGI:MGI:3778519|PMID:18454205)
PMID:21873635
RGD PMID:18454205, PMID:21873635 MGI:MGI:3778519, RGD:13792537 NCBI chr 7:135,465,021...135,630,941
Ensembl chr 7:135,466,884...135,630,654
JBrowse link
G Adamts3 ADAM metallopeptidase with thrombospondin type 1, motif 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:19,866,278...20,072,896
Ensembl chr14:19,866,408...20,070,994
JBrowse link
G Adamts4 ADAM metallopeptidase with thrombospondin type 1 motif, 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:89,622,996...89,632,485
Ensembl chr13:89,622,632...89,634,419
JBrowse link
G Adamts5 ADAM metallopeptidase with thrombospondin type 1 motif, 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:25,411,174...25,456,639
Ensembl chr11:25,410,975...25,456,836
JBrowse link
G Adamts6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:34,374,142...34,589,676
Ensembl chr 2:34,374,158...34,586,755
JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif, 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:97,535,777...97,575,661
Ensembl chr 8:97,535,777...97,575,655
JBrowse link
G Adamts8 ADAM metallopeptidase with thrombospondin type 1 motif, 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:32,017,684...32,037,529
Ensembl chr 8:32,018,560...32,037,531
JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 ISO
IBA
(MGI:MGI:4452308|PMID:20096780)
PMID:21873635
RGD PMID:20096780, PMID:21873635 MGI:MGI:4452308, RGD:13792537 NCBI chr 4:124,660,254...124,860,997
Ensembl chr 4:124,660,262...124,858,250
JBrowse link
G Adamtsl2 ADAMTS-like 2 ISO
IBA
(MGI:MGI:5638958|PMID:25762570)
PMID:21873635
RGD PMID:25762570, PMID:21873635 MGI:MGI:5638958, RGD:13792537 NCBI chr 3:5,624,473...5,654,890
Ensembl chr 3:5,624,506...5,654,910
JBrowse link
G Adamtsl3 ADAMTS-like 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:144,238,958...144,561,065
Ensembl chr 1:144,239,020...144,561,247
JBrowse link
G Adamtsl4 ADAMTS-like 4 ISO
IBA
(MGI:MGI:3807344|PMID:18757743)
PMID:21873635
RGD PMID:18757743, PMID:21873635 MGI:MGI:3807344, RGD:13792537 NCBI chr 2:197,803,572...197,815,058
Ensembl chr 2:197,803,584...197,814,808
JBrowse link
G Adamtsl5 ADAMTS-like 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:12,228,706...12,237,382
Ensembl chr 7:12,229,379...12,234,576
JBrowse link
G Agt angiotensinogen ISO MGI:MGI:2136636 (MGI:MGI:2385816|PMID:9734405) RGD PMID:9734405 MGI:MGI:2385816 NCBI chr19:57,321,594...57,333,460
Ensembl chr19:57,321,640...57,333,433
JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 ISO MGI:MGI:108405 (MGI:MGI:3614238|PMID:16407979) RGD PMID:16407979 MGI:MGI:3614238 NCBI chr 1:170,387,625...170,411,263
Ensembl chr 1:170,387,609...170,404,056
JBrowse link
G Apbb2 amyloid beta precursor protein binding family B member 2 ISO MGI:MGI:107765 (MGI:MGI:3614238|PMID:16407979) RGD PMID:16407979 MGI:MGI:3614238 NCBI chr14:43,205,047...43,526,968
Ensembl chr14:43,512,901...43,523,080
JBrowse link
G Aplp1 amyloid beta precursor like protein 1 ISO MGI:MGI:2137246|MGI:MGI:2154522 (MGI:MGI:3056838|PMID:15385965) RGD PMID:15385965 MGI:MGI:3056838 NCBI chr 1:88,897,525...88,908,750
Ensembl chr 1:88,897,532...88,908,750
JBrowse link
G Aplp2 amyloid beta precursor like protein 2 ISO MGI:MGI:2154522|MGI:MGI:2154545 (MGI:MGI:3056838|PMID:15385965) RGD PMID:15385965 MGI:MGI:3056838 NCBI chr 8:32,298,526...32,328,821
Ensembl chr 8:32,298,532...32,328,839
JBrowse link
G App amyloid beta precursor protein ISO
ISS
MGI:MGI:2137246|MGI:MGI:2154545 (MGI:MGI:3056838|PMID:15385965)
GO_REF:0000024
RGD
UniProt
PMID:15385965 GO_REF:0000024, MGI:MGI:3056838 NCBI chr11:24,425,013...24,641,872
Ensembl chr11:24,425,005...24,641,858
JBrowse link
G Atp7a ATPase copper transporting alpha ISO MGI:MGI:1856097 (MGI:MGI:53994|PMID:1115218) RGD PMID:1115218 MGI:MGI:53994 NCBI chr  X:77,076,085...77,193,644
Ensembl chr  X:77,076,106...77,193,644
JBrowse link
G Atxn1l ataxin 1-like ISO MGI:MGI:5301616 (MGI:MGI:5298126|PMID:22014525) RGD PMID:22014525 MGI:MGI:5298126 NCBI chr19:41,932,356...41,939,456 JBrowse link
G B4galt1 beta-1,4-galactosyltransferase 1 IEA
ISO
GO_REF:0000107
MGI:MGI:2178779|MGI:MGI:2388614 (MGI:MGI:2178150|PMID:11900463), (MGI:MGI:84206|PMID:8787759)
Ensembl
RGD
PMID:8787759, PMID:11900463 GO_REF:0000107, MGI:MGI:2178150, MGI:MGI:84206 NCBI chr 5:57,121,768...57,168,610
Ensembl chr 5:57,121,769...57,168,610
JBrowse link
G Bcl3 BCL3, transcription coactivator ISO MGI:MGI:2158443 (MGI:MGI:3655550|PMID:10586052) RGD PMID:10586052 MGI:MGI:3655550 NCBI chr 1:80,730,758...80,745,273
Ensembl chr 1:80,730,499...80,744,831
JBrowse link
G Ccdc80 coiled-coil domain containing 80 ISO (MGI:MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:MGI:3807344 NCBI chr11:60,645,660...60,679,249
Ensembl chr11:60,645,086...60,679,555
JBrowse link
G Ccn1 cellular communication network factor 1 ISO
IEA
(MGI:MGI:3807344|PMID:18757743)
GO_REF:0000107
RGD
Ensembl
PMID:18757743 GO_REF:0000107, MGI:MGI:3807344 NCBI chr 2:251,529,354...251,532,312
Ensembl chr 2:251,529,354...251,532,312
JBrowse link
G Col10a1 collagen type X alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:41,180,295...41,190,664
Ensembl chr20:41,184,287...41,189,633
JBrowse link
G Col11a1 collagen type XI alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523
JBrowse link
G Col11a2 collagen type XI alpha 2 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:3,829,324...3,859,022
Ensembl chr20:3,830,164...3,859,018
JBrowse link
G Col13a1 collagen type XIII alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:31,456,502...31,598,360
Ensembl chr20:31,456,852...31,598,118
JBrowse link
G Col15a1 collagen type XV alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:62,840,360...62,950,240 JBrowse link
G Col16a1 collagen type XVI alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:148,257,030...148,311,645
Ensembl chr 5:148,257,642...148,311,645
JBrowse link
G Col17a1 collagen type XVII alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:267,416,681...267,465,049
Ensembl chr 1:267,417,459...267,463,705
JBrowse link
G Col18a1 collagen type XVIII alpha 1 chain ISO
IBA
MGI:MGI:2179134 (MGI:MGI:3054601|PMID:15254016)
PMID:21873635
RGD PMID:15254016, PMID:21873635 MGI:MGI:3054601, RGD:13792537 NCBI chr20:12,225,202...12,332,858
Ensembl chr20:12,225,202...12,332,858
JBrowse link
G Col19a1 collagen type XIX alpha 1 chain ISO
IBA
MGI:MGI:3053870 (MGI:MGI:3053247|PMID:15302855)
PMID:21873635
RGD PMID:15302855, PMID:21873635 MGI:MGI:3053247, RGD:13792537 NCBI chr 9:30,508,003...30,864,836
Ensembl chr 9:30,515,089...30,844,199
JBrowse link
G Col1a1 collagen type I alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
JBrowse link
G Col1a2 collagen type I alpha 2 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:31,534,225...31,569,152
Ensembl chr 4:31,534,225...31,569,151
JBrowse link
G Col22a1 collagen type XXII alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:113,014,896...113,251,165
Ensembl chr 7:113,015,747...113,228,439
JBrowse link
G Col23a1 collagen type XXIII alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:34,846,618...34,934,991
Ensembl chr10:34,903,343...34,933,539
JBrowse link
G Col24a1 collagen type XXIV alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:251,200,686...251,436,254
Ensembl chr 2:251,200,686...251,434,932
JBrowse link
G Col25a1 collagen type XXV alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:235,515,364...235,705,448
Ensembl chr 2:235,596,123...235,715,057
JBrowse link
G Col27a1 collagen type XXVII alpha 1 chain ISO
IBA
MGI:MGI:5315593 (MGI:MGI:5315238|PMID:22206015)
PMID:21873635
RGD PMID:22206015, PMID:21873635 MGI:MGI:5315238, RGD:13792537 NCBI chr 5:79,054,004...79,172,442
Ensembl chr 5:79,055,521...79,170,765
JBrowse link
G Col28a1 collagen type XXVIII alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:34,048,074...34,198,558
Ensembl chr 4:34,048,533...34,194,764
JBrowse link
G Col2a1 collagen type II alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
JBrowse link
G Col3a1 collagen type III alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:52,023,295...52,059,221
Ensembl chr 9:52,023,295...52,059,217
JBrowse link
G Col4a1 collagen type IV alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:83,522,162...83,632,153
Ensembl chr16:83,522,162...83,632,153
JBrowse link
G Col4a2 collagen type IV alpha 2 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:83,386,388...83,522,169
Ensembl chr16:83,387,364...83,438,561
JBrowse link
G Col4a3 collagen type IV alpha 3 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:88,357,528...88,484,735
Ensembl chr 9:88,357,556...88,485,830
JBrowse link
G Col4a4 collagen type IV alpha 4 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:88,314,763...88,357,183
Ensembl chr 9:88,232,455...88,357,182
JBrowse link
G Col4a5 collagen type IV alpha 5 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:112,769,595...112,983,720
Ensembl chr  X:112,769,645...112,983,685
JBrowse link
G Col4a6 collagen type IV alpha 6 chain ISO
IBA
(MGI:MGI:2148900|PMID:10965041)
PMID:21873635
RGD PMID:10965041, PMID:21873635 MGI:MGI:2148900, RGD:13792537 NCBI chr  X:112,405,647...112,768,337
Ensembl chr  X:112,405,647...112,473,822
JBrowse link
G Col5a1 collagen type V alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:6,430,180...6,581,010
Ensembl chr 3:6,430,201...6,578,882
JBrowse link
G Col5a2 collagen type V alpha 2 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:52,091,088...52,238,735
Ensembl chr 9:52,092,511...52,238,564
JBrowse link
G Col5a3 collagen type V alpha 3 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:21,786,324...21,831,751
Ensembl chr 8:21,786,324...21,831,668
JBrowse link
G Col6a1 collagen type VI alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:12,657,913...12,676,370
Ensembl chr20:12,658,065...12,675,561
JBrowse link
G Col8a1 collagen type VIII alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:44,877,690...45,006,203
Ensembl chr11:44,877,859...45,007,891
JBrowse link
G Col8a2 collagen type VIII alpha 2 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:144,308,527...144,335,142
Ensembl chr 5:144,308,611...144,335,172
JBrowse link
G Col9a1 collagen type IX alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:30,419,001...30,502,307
Ensembl chr 9:30,419,001...30,502,298
JBrowse link
G Col9a2 collagen type IX alpha 2 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:139,962,684...139,979,865
Ensembl chr 5:139,963,002...139,979,864
JBrowse link
G Col9a3 collagen type IX alpha 3 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:176,102,287...176,124,839
Ensembl chr 3:176,102,351...176,124,306
JBrowse link
G Colq collagen like tail subunit of asymmetric acetylcholinesterase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:7,626,380...7,681,621
Ensembl chr16:7,627,603...7,681,576
JBrowse link
G Crispld2 cysteine-rich secretory protein LCCL domain containing 2 ISO (MGI:MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:MGI:3807344 NCBI chr19:52,647,038...52,705,118
Ensembl chr19:52,647,070...52,705,131
JBrowse link
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 ISO MGI:MGI:4947395 (MGI:MGI:4946456|PMID:21148564) RGD PMID:21148564 MGI:MGI:4946456 NCBI chr16:22,704,318...23,075,071
Ensembl chr16:22,979,444...23,074,798
JBrowse link
G Dmp1 dentin matrix acidic phosphoprotein 1 ISO
IEA
(MGI:MGI:3807344|PMID:18757743)
GO_REF:0000107
RGD
Ensembl
PMID:18757743 GO_REF:0000107, MGI:MGI:3807344 NCBI chr14:6,889,851...6,923,961
Ensembl chr14:6,889,856...6,900,733
JBrowse link
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 ISO MGI:MGI:2151092 (MGI:MGI:5294250|PMID:21972064) RGD PMID:21972064 MGI:MGI:5294250 NCBI chr 4:2,711,329...2,774,969
Ensembl chr 4:2,711,385...2,774,890
JBrowse link
G Ecm2 extracellular matrix protein 2 ISO (MGI:MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:MGI:3807344 NCBI chr17:15,533,760...15,566,403
Ensembl chr17:15,533,972...15,566,332
JBrowse link
G Egfl6 EGF-like-domain, multiple 6 ISO (MGI:MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:MGI:3807344 NCBI chr  X:29,430,789...29,488,737
Ensembl chr  X:29,430,831...29,488,739
JBrowse link
G Egflam EGF-like, fibronectin type III and laminin G domains ISO
IEA
(MGI:MGI:3807344|PMID:18757743)
GO_REF:0000107
RGD
Ensembl
PMID:18757743 GO_REF:0000107, MGI:MGI:3807344 NCBI chr 2:56,503,002...56,681,334
Ensembl chr 2:56,502,807...56,679,955
JBrowse link
G Elf3 E74 like ETS transcription factor 3 ISO MGI:MGI:2662485 (MGI:MGI:2179164|PMID:11984530) RGD PMID:11984530 MGI:MGI:2179164 NCBI chr13:52,083,873...52,088,798
Ensembl chr13:52,083,859...52,088,780
JBrowse link
G Eln elastin ISO
IEA
(MGI:MGI:3807344|PMID:18757743)
GO_REF:0000107
RGD
Ensembl
PMID:18757743 GO_REF:0000107, MGI:MGI:3807344 NCBI chr12:24,978,478...25,021,864
Ensembl chr12:24,978,483...25,021,863
JBrowse link
G Emilin1 elastin microfibril interfacer 1 ISO (MGI:MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:MGI:3807344 NCBI chr 6:26,821,249...26,829,013
Ensembl chr 6:26,821,255...26,828,972
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO MGI:MGI:2183949 (MGI:MGI:1267106|PMID:9651581) RGD PMID:9651581 MGI:MGI:1267106 NCBI chr 1:80,293,574...80,307,334
Ensembl chr 1:80,293,566...80,307,344
JBrowse link
G Ero1a endoplasmic reticulum oxidoreductase 1 alpha ISO MGI:MGI:1859815|MGI:MGI:1914725 (MGI:MGI:5461404|PMID:22981861) RGD PMID:22981861 MGI:MGI:5461404 NCBI chr15:19,619,947...19,655,381
Ensembl chr15:19,619,973...19,655,381
JBrowse link
G Ero1b endoplasmic reticulum oxidoreductase 1 beta ISO MGI:MGI:1354385|MGI:MGI:1859815 (MGI:MGI:5461404|PMID:22981861) RGD PMID:22981861 MGI:MGI:5461404 NCBI chr17:90,709,394...90,783,110
Ensembl chr17:90,710,555...90,756,048
JBrowse link
G Fbln1 fibulin 1 ISO
IBA
(MGI:MGI:3807344|PMID:18757743)
PMID:21873635
RGD PMID:18757743, PMID:21873635 MGI:MGI:3807344, RGD:13792537 NCBI chr 7:126,096,793...126,176,468
Ensembl chr 7:126,096,793...126,176,468
JBrowse link
G Fbln2 fibulin 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:122,835,237...122,895,127
Ensembl chr 4:122,835,436...122,895,121
JBrowse link
G Fbln5 fibulin 5 ISO (MGI:MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:MGI:3807344 NCBI chr 6:125,644,797...125,723,957
Ensembl chr 6:125,644,804...125,723,944
JBrowse link
G Fn1 fibronectin 1 IMP RGD PMID:12388756 RGD:1358623 NCBI chr 9:78,900,111...78,969,018
Ensembl chr 9:78,900,103...78,969,078
JBrowse link
G Foxf1 forkhead box F1 ISO MGI:MGI:1347479 (MGI:MGI:3617131|PMID:16439479) RGD PMID:16439479 MGI:MGI:3617131 NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
JBrowse link
G Foxf2 forkhead box F2 ISO MGI:MGI:1347470|MGI:MGI:2667134 (MGI:MGI:3617131|PMID:16439479) RGD PMID:16439479 MGI:MGI:3617131 NCBI chr17:34,150,417...34,156,450 JBrowse link
G Gfap glial fibrillary acidic protein ISO MGI:MGI:2183221 (MGI:MGI:3719550|PMID:11487638) RGD PMID:11487638 MGI:MGI:3719550 NCBI chr10:90,990,762...90,999,435
Ensembl chr10:90,990,762...90,999,506
JBrowse link
G Gfod2 glucose-fructose oxidoreductase domain containing 2 ISO
IBA
(MGI:MGI:3807344|PMID:18757743)
PMID:21873635
RGD PMID:18757743, PMID:21873635 MGI:MGI:3807344, RGD:13792537 NCBI chr19:37,678,488...37,725,623
Ensembl chr19:37,682,734...37,725,623
JBrowse link
G Hpse2 heparanase 2 (inactive) ISO MGI:MGI:4308701 (MGI:MGI:5621237|PMID:25510506) RGD PMID:25510506 MGI:MGI:5621237 NCBI chr 1:262,020,903...263,138,299 JBrowse link
G Hsd17b12 hydroxysteroid (17-beta) dehydrogenase 12 ISO (MGI:MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:MGI:3807344 NCBI chr 3:82,924,699...83,048,465
Ensembl chr 3:82,924,687...83,048,435
JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 ISO MGI:MGI:1934892 (MGI:MGI:1349497|PMID:10579729) RGD PMID:10579729 MGI:MGI:1349497 NCBI chr 5:155,812,096...155,913,751 JBrowse link
G Ibsp integrin-binding sialoprotein ISO
IBA
ISS
IEA
(MGI:MGI:3807344|PMID:18757743)
PMID:21873635
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:18757743, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3807344, RGD:13792537 NCBI chr14:6,801,200...6,813,987
Ensembl chr14:6,801,204...6,813,945
JBrowse link
G Idua alpha-L-iduronidase ISO MGI:MGI:2176236 (MGI:MGI:5632446|PMID:25410057) RGD PMID:25410057 MGI:MGI:5632446 NCBI chr14:2,041,828...2,056,762
Ensembl chr14:2,042,411...2,056,762
JBrowse link
G Itga8 integrin subunit alpha 8 ISO MGI:MGI:2181699 (MGI:MGI:1355040|PMID:10742111) RGD PMID:10742111 MGI:MGI:1355040 NCBI chr17:79,321,893...79,676,927
Ensembl chr17:79,321,900...79,676,499
JBrowse link
G Itih1 inter-alpha trypsin inhibitor, heavy chain 1 ISO (MGI:MGI:3761906|PMID:17675295) RGD PMID:17675295 MGI:MGI:3761906 NCBI chr16:7,012,376...7,026,542
Ensembl chr16:7,012,354...7,026,540
JBrowse link
G Kazald1 Kazal-type serine peptidase inhibitor domain 1 ISO (MGI:MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:MGI:3807344 NCBI chr 1:264,827,739...264,831,152
Ensembl chr 1:264,827,739...264,831,151
JBrowse link
G Lgals3 galectin 3 ISO MGI:MGI:97011 (MGI:MGI:3589495|PMID:15800063) RGD PMID:15800063 MGI:MGI:3589495 NCBI chr15:24,153,602...24,165,537
Ensembl chr15:24,141,651...24,165,537
JBrowse link
G LOC100910978 extracellular matrix protein 2-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:14,695,293...14,719,087
Ensembl chr17:14,696,308...14,717,420
JBrowse link
G LOC100911572 collagen alpha-3(IV) chain-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:90,856,897...90,877,771
Ensembl chr 9:90,857,308...90,874,704
JBrowse link
G LOC103693323 collagen alpha-1(XXIII) chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:36,741,139...37,031,200
Ensembl chr10:36,741,434...37,028,367
JBrowse link
G LOC103694864 matrix metalloproteinase-28-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G LOC103694874 stromelysin-3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G LOC108348074 collagen alpha-1(XV) chain-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:64,475,618...64,543,510 JBrowse link
G Mia MIA SH3 domain containing ISO
IBA
MGI:MGI:2159701 (MGI:MGI:2158918|PMID:11839810)
PMID:21873635
RGD PMID:11839810, PMID:21873635 MGI:MGI:2158918, RGD:13792537 NCBI chr 1:83,991,577...83,993,270
Ensembl chr 1:83,991,578...83,993,270
JBrowse link
G Mmp10 matrix metallopeptidase 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:5,734,348...5,742,243
Ensembl chr 8:5,734,348...5,742,243
JBrowse link
G Mmp11 matrix metallopeptidase 11 ISO
IBA
MGI:MGI:2387934 (MGI:MGI:3822602|PMID:18622425)
PMID:21873635
RGD PMID:18622425, PMID:21873635 MGI:MGI:3822602, RGD:13792537 NCBI chr20:13,670,051...13,678,834
Ensembl chr20:13,670,066...13,678,089
JBrowse link
G Mmp12 matrix metallopeptidase 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:5,594,717...5,616,494
Ensembl chr 8:5,606,592...5,616,493
JBrowse link
G Mmp13 matrix metallopeptidase 13 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:5,522,739...5,533,018
Ensembl chr 8:5,522,739...5,533,018
JBrowse link
G Mmp14 matrix metallopeptidase 14 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:33,074,441...33,083,666
Ensembl chr15:33,074,441...33,083,655
JBrowse link
G Mmp15 matrix metallopeptidase 15 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:10,079,881...10,101,380
Ensembl chr19:10,079,765...10,101,451
JBrowse link
G Mmp16 matrix metallopeptidase 16 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:31,568,344...31,818,368
Ensembl chr 5:31,568,419...31,810,484
JBrowse link
G Mmp17 matrix metallopeptidase 17 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:30,353,874...30,356,526
NCBI chr12:30,701,900...30,728,683
Ensembl chr12:30,702,571...30,728,655
JBrowse link
G Mmp19 matrix metallopeptidase 19 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:3,216,392...3,224,202
Ensembl chr 7:3,216,497...3,224,201
JBrowse link
G Mmp1b matrix metallopeptidase 1b (interstitial collagenase) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:5,622,657...5,688,762
Ensembl chr 8:5,623,198...5,631,014
JBrowse link
G Mmp2 matrix metallopeptidase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:15,542,771...15,570,589
Ensembl chr19:15,542,765...15,570,611
JBrowse link
G Mmp20 matrix metallopeptidase 20 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:5,823,147...5,875,555
Ensembl chr 8:5,833,359...5,875,232
JBrowse link
G Mmp21 matrix metallopeptidase 21 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:205,745,119...205,750,786
Ensembl chr 1:205,745,119...205,750,786
JBrowse link
G Mmp23 matrix metallopeptidase 23 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:173,078,811...173,082,834
Ensembl chr 5:173,078,590...173,081,839
JBrowse link
G Mmp24 matrix metallopeptidase 24 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:151,307,309...151,355,401
Ensembl chr 3:151,310,598...151,355,401
JBrowse link
G Mmp27 matrix metallopeptidase 27 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:5,790,019...5,799,938
Ensembl chr 8:5,790,034...5,800,342
JBrowse link
G Mmp28 matrix metallopeptidase 28 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:70,660,691...70,681,672
Ensembl chr10:70,660,691...70,681,672
JBrowse link
G Mmp3 matrix metallopeptidase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:5,676,608...5,698,579
Ensembl chr 8:5,676,665...5,698,579
JBrowse link
G Mmp7 matrix metallopeptidase 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:5,893,253...5,900,965
Ensembl chr 8:5,893,249...5,901,049
JBrowse link
G Mmp8 matrix metallopeptidase 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:5,768,808...5,777,741
Ensembl chr 8:5,768,811...5,778,702
JBrowse link
G Mmp9 matrix metallopeptidase 9 ISO
IBA
IEA
MGI:MGI:1932294|MGI:MGI:96778 (MGI:MGI:3589495|PMID:15800063)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:15800063, PMID:21873635 GO_REF:0000107, MGI:MGI:3589495, RGD:13792537 NCBI chr 3:161,413,410...161,421,473
Ensembl chr 3:161,413,298...161,421,520
JBrowse link
G Mpzl3 myelin protein zero-like 3 ISO MGI:MGI:1857012 (MGI:MGI:3055636|PMID:15482472) RGD PMID:15482472 MGI:MGI:3055636 NCBI chr 8:49,354,257...49,374,444
Ensembl chr 8:49,354,115...49,376,687
JBrowse link
G Myf5 myogenic factor 5 ISO MGI:MGI:1857973 (MGI:MGI:3624056|PMID:16554364) RGD PMID:16554364 MGI:MGI:3624056 NCBI chr 7:49,729,533...49,732,974
Ensembl chr 7:49,729,533...49,732,764
JBrowse link
G Ndnf neuron-derived neurotrophic factor ISO (MGI:MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:MGI:3807344 NCBI chr 4:96,528,830...96,565,780 JBrowse link
G Nepn nephrocan IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:33,527,932...33,543,860
Ensembl chr20:33,527,932...33,543,848
JBrowse link
G Nf1 neurofibromin 1 ISO
ISS
MGI:MGI:1857478 (MGI:MGI:3655425|PMID:16835260)
GO_REF:0000024
RGD
HGNC
PMID:16835260 GO_REF:0000024, MGI:MGI:3655425 NCBI chr10:66,732,460...66,928,706
Ensembl chr10:66,690,133...66,928,903
JBrowse link
G Nfkb2 nuclear factor kappa B subunit 2 ISO MGI:MGI:2179705 (MGI:MGI:3655550|PMID:10586052) RGD PMID:10586052 MGI:MGI:3655550 NCBI chr 1:266,050,634...266,059,277
Ensembl chr 1:266,053,002...266,059,256
JBrowse link
G Nid1 nidogen 1 ISO (MGI:MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:MGI:3807344 NCBI chr17:90,553,161...90,627,133
Ensembl chr17:90,553,394...90,627,101
JBrowse link
G Nox1 NADPH oxidase 1 ISO
IEA
MGI:MGI:3616995 (MGI:MGI:3615064|PMID:16386251)
GO_REF:0000107
RGD
Ensembl
PMID:16386251 GO_REF:0000107, MGI:MGI:3615064 NCBI chr  X:104,909,328...104,932,508
Ensembl chr  X:104,909,326...104,932,508
JBrowse link
G Nphp3 nephrocystin 3 ISO MGI:MGI:1856987 (MGI:MGI:71873|PMID:7539536) RGD PMID:7539536 MGI:MGI:71873 NCBI chr 8:112,526,553...112,575,745
Ensembl chr 8:112,526,553...112,575,745
JBrowse link
G Npnt nephronectin ISO
IEA
(MGI:MGI:3807344|PMID:18757743)
GO_REF:0000107
RGD
Ensembl
PMID:18757743 GO_REF:0000107, MGI:MGI:3807344 NCBI chr 2:238,001,767...238,068,886
Ensembl chr 2:238,002,990...238,068,694
JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 ISO MGI:MGI:2176560 (MGI:MGI:3615102|PMID:16424942) RGD PMID:16424942 MGI:MGI:3615102 NCBI chr20:47,286,843...47,306,318
Ensembl chr20:47,288,137...47,306,318
JBrowse link
G Olfml2a olfactomedin-like 2A ISO (MGI:MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:MGI:3807344 NCBI chr 3:23,223,468...23,259,318
Ensembl chr 3:23,223,479...23,259,321
JBrowse link
G Olfml2b olfactomedin-like 2B ISO (MGI:MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:MGI:3807344 NCBI chr13:88,995,301...89,032,487
Ensembl chr13:88,995,316...89,032,487
JBrowse link
G Otol1 otolin 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:166,845,543...166,866,513
Ensembl chr 2:166,856,784...166,866,195
JBrowse link
G Papln papilin, proteoglycan-like sulfated glycoprotein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:107,245,573...107,282,256
Ensembl chr 6:107,245,820...107,276,755
JBrowse link
G Pdgfra platelet derived growth factor receptor alpha ISO
IEA
MGI:MGI:1926728 (MGI:MGI:3525374|PMID:15543606)
GO_REF:0000107
RGD
Ensembl
PMID:15543606 GO_REF:0000107, MGI:MGI:3525374 NCBI chr14:35,527,926...35,581,130
Ensembl chr14:35,527,927...35,581,031
JBrowse link
G Pomt1 protein-O-mannosyltransferase 1 ISO MGI:MGI:3497739 (MGI:MGI:3057057|PMID:15383666) RGD PMID:15383666 MGI:MGI:3057057 NCBI chr 3:11,253,424...11,271,873
Ensembl chr 3:11,254,026...11,271,872
JBrowse link
G Postn periostin ISO
IBA
(MGI:MGI:3610687|PMID:16314533)
PMID:21873635
RGD PMID:16314533, PMID:21873635 MGI:MGI:3610687, RGD:13792537 NCBI chr 2:143,656,820...143,688,087
Ensembl chr 2:143,656,793...143,688,087
JBrowse link
G Prdx4 peroxiredoxin 4 ISO MGI:MGI:1354385|MGI:MGI:1914725 (MGI:MGI:5461404|PMID:22981861) RGD PMID:22981861 MGI:MGI:5461404 NCBI chr  X:43,495,453...43,512,994
Ensembl chr  X:43,497,763...43,512,991
JBrowse link
G Ptk2 protein tyrosine kinase 2 ISO
IEA
MGI:MGI:2684666 (MGI:MGI:2679914|PMID:14642275)
GO_REF:0000107
RGD
Ensembl
PMID:14642275 GO_REF:0000107, MGI:MGI:2679914 NCBI chr 7:114,436,419...114,611,317
Ensembl chr 7:114,437,361...114,590,119
JBrowse link
G Ptx3 pentraxin 3 ISO (MGI:MGI:3761906|PMID:17675295) RGD PMID:17675295 MGI:MGI:3761906 NCBI chr 2:158,097,843...158,103,653
Ensembl chr 2:158,097,843...158,103,653
JBrowse link
G Pxdn peroxidasin ISO (PMID:19590037)
(MGI:MGI:3851833|PMID:19590037)
RGD PMID:19590037 MGI:MGI:3851833 NCBI chr 6:48,866,496...48,982,368
Ensembl chr 6:48,866,601...48,980,340
JBrowse link
G Reck reversion-inducing-cysteine-rich protein with kazal motifs ISO
IBA
MGI:MGI:3623517 (MGI:MGI:3621661|PMID:11747814)
PMID:21873635
RGD PMID:11747814, PMID:21873635 MGI:MGI:3621661, RGD:13792537 NCBI chr 5:59,348,568...59,415,169
Ensembl chr 5:59,348,639...59,415,135
JBrowse link
G RGD1562885 similar to RIKEN cDNA 2300002M23 ISO (MGI:MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:MGI:3807344 NCBI chr20:3,689,608...3,691,164 JBrowse link
G Rxfp1 relaxin family peptide receptor 1 ISO
IEA
MGI:MGI:3054831 (MGI:MGI:3054144|PMID:15256493)
GO_REF:0000107
RGD
Ensembl
PMID:15256493 GO_REF:0000107, MGI:MGI:3054144 NCBI chr 2:178,402,411...178,520,213
Ensembl chr 2:178,399,274...178,521,038
JBrowse link
G Scara3 scavenger receptor class A, member 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:42,605,505...42,638,409
Ensembl chr15:42,605,473...42,638,392
JBrowse link
G Serac1 serine active site containing 1 ISO (MGI:MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:MGI:3807344 NCBI chr 1:46,934,499...46,978,264
Ensembl chr 1:46,942,192...46,978,261
JBrowse link
G Serpinb5 serpin family B member 5 ISO
IEA
MGI:MGI:3040188 (MGI:MGI:3806752|PMID:18593913)
GO_REF:0000107
RGD
Ensembl
PMID:18593913 GO_REF:0000107, MGI:MGI:3806752 NCBI chr13:26,903,052...26,923,250
Ensembl chr13:26,903,052...26,923,250
JBrowse link
G Slc39a8 solute carrier family 39 member 8 ISO
ISS
(PMID:29337306)
(MGI:MGI:6117959|PMID:29337306)
GO_REF:0000024
RGD
UniProt
PMID:29337306 GO_REF:0000024, MGI:MGI:6117959 NCBI chr 2:241,028,851...241,092,584
Ensembl chr 2:241,029,693...241,092,582
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO MGI:MGI:2450311|MGI:MGI:3605892 (MGI:MGI:3776329|PMID:18267097) RGD PMID:18267097 MGI:MGI:3776329 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Smoc1 SPARC related modular calcium binding 1 ISO
IBA
(MGI:MGI:3807344|PMID:18757743)
PMID:21873635
RGD PMID:18757743, PMID:21873635 MGI:MGI:3807344, RGD:13792537 NCBI chr 6:104,718,403...104,879,611
Ensembl chr 6:104,718,512...104,877,980
JBrowse link
G Smoc2 SPARC related modular calcium binding 2 ISO
IBA
(MGI:MGI:3807344|PMID:18757743)
PMID:21873635
RGD PMID:18757743, PMID:21873635 MGI:MGI:3807344, RGD:13792537 NCBI chr 1:56,242,289...56,374,106
Ensembl chr 1:56,242,346...56,374,120
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO MGI:MGI:2385468|MGI:MGI:2450311 (MGI:MGI:3709829|PMID:17350610), (MGI:MGI:5523731|PMID:24191021) RGD PMID:17350610, PMID:24191021 MGI:MGI:3709829, MGI:MGI:5523731 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 ISO MGI:MGI:3709554 (MGI:MGI:3700412|PMID:17174946) RGD PMID:17174946 MGI:MGI:3700412 NCBI chr 3:111,049,132...111,061,991
Ensembl chr 3:111,049,118...111,062,011
JBrowse link
G Spock2 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2 ISO (MGI:MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:MGI:3807344 NCBI chr20:29,654,926...29,679,927
Ensembl chr20:29,655,226...29,677,926
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO MGI:MGI:1888389 (MGI:MGI:2156271|PMID:11784073), (MGI:MGI:3522686|PMID:15528466) RGD PMID:11784073, PMID:15528466 MGI:MGI:2156271, MGI:MGI:3522686 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tgfbi transforming growth factor, beta induced ISO
IBA
(MGI:MGI:3807344|PMID:18757743)
PMID:21873635
RGD PMID:18757743, PMID:21873635 MGI:MGI:3807344, RGD:13792537 NCBI chr17:8,400,123...8,429,338
Ensembl chr17:8,400,146...8,429,338
JBrowse link
G Tnf tumor necrosis factor ISO (MGI:MGI:3510270|PMID:15381731) RGD PMID:15381731 MGI:MGI:3510270 NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
JBrowse link
G Tnfrsf11b TNF receptor superfamily member 11B ISO (MGI:MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:MGI:3807344 NCBI chr 7:93,798,580...93,826,586
Ensembl chr 7:93,798,545...93,826,665
JBrowse link
G Tnr tenascin R IEA
ISO
GO_REF:0000107
MGI:MGI:2154583 (MGI:MGI:1337730|PMID:10341229), (MGI:MGI:1927381|PMID:11077416), (MGI:MGI:3652670|PMID:16870730)
Ensembl
RGD
PMID:10341229, PMID:11077416, PMID:16870730 GO_REF:0000107, MGI:MGI:1337730, MGI:MGI:1927381, MGI:MGI:3652670 NCBI chr13:77,602,249...77,678,385
Ensembl chr13:77,485,113...77,678,437
JBrowse link
G Tnxb tenascin XB ISO MGI:MGI:3053791 (MGI:MGI:3052884|PMID:15242785) RGD PMID:15242785 MGI:MGI:3052884
G Vhl von Hippel-Lindau tumor suppressor ISO MGI:MGI:2136645|MGI:MGI:2450311 (MGI:MGI:3619780|PMID:16537898) RGD PMID:16537898 MGI:MGI:3619780 NCBI chr 4:145,580,869...145,587,835
Ensembl chr 4:145,580,799...145,587,845
JBrowse link
G Vit vitrin ISO
IBA
(MGI:MGI:3807344|PMID:18757743)
PMID:21873635
RGD PMID:18757743, PMID:21873635 MGI:MGI:3807344, RGD:13792537 NCBI chr 6:1,091,817...1,208,888
Ensembl chr 6:1,147,012...1,208,392
JBrowse link
G Vtn vitronectin ISO (MGI:MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:MGI:3807344 NCBI chr10:65,767,960...65,771,040
Ensembl chr10:65,767,053...65,771,038
JBrowse link
G Vwa1 von Willebrand factor A domain containing 1 ISO MGI:MGI:3809230 (MGI:MGI:3807344|PMID:18757743), (MGI:MGI:3849094|PMID:19279005) RGD PMID:18757743, PMID:19279005 MGI:MGI:3807344, MGI:MGI:3849094 NCBI chr 5:173,216,737...173,221,923
Ensembl chr 5:173,216,741...173,222,440
JBrowse link
G Wnt3a Wnt family member 3A ISO (MGI:MGI:3793974|PMID:17943183) RGD PMID:17943183 MGI:MGI:3793974 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
gene expression involved in extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein ISO MGI:MGI:2653208 (MGI:MGI:5588521|PMID:23900597) RGD PMID:23900597 MGI:MGI:5588521 NCBI chr14:6,926,972...6,933,079
Ensembl chr14:6,926,976...6,933,070
JBrowse link
glomerular basement membrane development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col4a3 collagen type IV alpha 3 chain ISO (MGI:MGI:3610934|PMID:12631063) RGD PMID:12631063 MGI:MGI:3610934 NCBI chr 9:88,357,528...88,484,735
Ensembl chr 9:88,357,556...88,485,830
JBrowse link
G Col4a4 collagen type IV alpha 4 chain ISO
IBA
MGI:MGI:1857960 (MGI:MGI:1347142|PMID:10534397)
PMID:21873635
(PMID:17942953), (PMID:19675380)
RGD PMID:10534397, PMID:17942953, PMID:19675380, PMID:21873635 MGI:MGI:1347142, RGD:13792537 NCBI chr 9:88,314,763...88,357,183
Ensembl chr 9:88,232,455...88,357,182
JBrowse link
G Ext1 exostosin glycosyltransferase 1 ISO (MGI:MGI:4360160|PMID:18480751) RGD PMID:18480751 MGI:MGI:4360160 NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
JBrowse link
G Mpv17 mitochondrial inner membrane protein MPV17 ISO (MGI:MGI:3776221|PMID:16041630) RGD PMID:16041630 MGI:MGI:3776221 NCBI chr 6:26,585,713...26,600,265
Ensembl chr 6:26,587,443...26,599,511
JBrowse link
G Myo1e myosin IE ISO
IEA
ISS
(MGI:MGI:4441423|PMID:19005011)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:19005011 GO_REF:0000024, GO_REF:0000107, MGI:MGI:4441423 NCBI chr 8:76,644,715...76,840,240
Ensembl chr 8:76,754,492...76,839,593
JBrowse link
G Nid1 nidogen 1 ISO
IEA
MGI:MGI:2682959 (MGI:MGI:2680880|PMID:14566019)
GO_REF:0000107
RGD
Ensembl
PMID:14566019 GO_REF:0000107, MGI:MGI:2680880 NCBI chr17:90,553,161...90,627,133
Ensembl chr17:90,553,394...90,627,101
JBrowse link
G Nphs1 NPHS1 adhesion molecule, nephrin IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:88,922,346...88,950,560
Ensembl chr 1:88,922,433...88,950,559
JBrowse link
G Sulf1 sulfatase 1 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
UniProtKB:Q8CFG0 (MGI:MGI:5306737|PMID:21719793)
Ensembl
RGD
PMID:21719793, PMID:21873635 GO_REF:0000107, MGI:MGI:5306737, RGD:13792537 NCBI chr 5:5,999,520...6,186,901
Ensembl chr 5:5,999,475...6,186,329
JBrowse link
G Sulf2 sulfatase 2 ISO
IBA
UniProtKB:Q8K007 (MGI:MGI:5306737|PMID:21719793)
PMID:21873635
RGD PMID:21719793, PMID:21873635 MGI:MGI:5306737, RGD:13792537 NCBI chr 3:162,791,349...162,872,984
Ensembl chr 3:162,791,355...162,872,831
JBrowse link
G Wt1 WT1 transcription factor ISO
IEA
ISS
(PMID:19205749)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:19205749 GO_REF:0000024, GO_REF:0000107 NCBI chr 3:95,133,221...95,180,574
Ensembl chr 3:95,133,713...95,180,564
JBrowse link
intercellular bridge organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tex14 testis expressed 14, intercellular bridge forming factor IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(MGI:MGI:3621609|PMID:16549803)
Ensembl
UniProt
RGD
PMID:16549803, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3621609, RGD:13792537 NCBI chr10:74,724,070...74,849,172
Ensembl chr10:74,724,549...74,849,194
JBrowse link
metanephric glomerular basement membrane development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb2 laminin subunit beta 2 IEA
ISO
GO_REF:0000107
MGI:MGI:2138070 (MGI:MGI:3664526|PMID:16886065), (MGI:MGI:75217|PMID:7670489)
Ensembl
RGD
PMID:7670489, PMID:16886065 GO_REF:0000107, MGI:MGI:3664526, MGI:MGI:75217 NCBI chr 8:117,268,335...117,280,517
Ensembl chr 8:117,268,337...117,280,517
JBrowse link
negative regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chadl chondroadherin-like ISO (PMID:25451920) RGD PMID:25451920 NCBI chr 7:122,915,847...122,929,127
Ensembl chr 7:122,922,022...122,926,336
JBrowse link
G Emilin1 elastin microfibril interfacer 1 ISO (MGI:MGI:5605894|PMID:25056700) RGD PMID:25056700 MGI:MGI:5605894 NCBI chr 6:26,821,249...26,829,013
Ensembl chr 6:26,821,255...26,828,972
JBrowse link
negative regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Antxr1 ANTXR cell adhesion molecule 1 ISO
IEA
MGI:MGI:5754386 (MGI:MGI:5662198|PMID:25572963)
GO_REF:0000107
RGD
Ensembl
PMID:25572963 GO_REF:0000107, MGI:MGI:5662198 NCBI chr 4:118,946,267...119,131,202
Ensembl chr 4:118,946,268...119,131,202
JBrowse link
negative regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adtrp androgen-dependent TFPI-regulating protein IEA
ISO
GO_REF:0000107
(PMID:28341552)
Ensembl
RGD
PMID:28341552 GO_REF:0000107 NCBI chr17:22,619,913...22,688,296
Ensembl chr17:22,619,891...22,688,307
JBrowse link
G Notch1 notch receptor 1 ISO (MGI:MGI:6158728|PMID:26491108) RGD PMID:26491108 MGI:MGI:6158728 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A ISO
IEA
UniProtKB:P25119 (MGI:MGI:6158728|PMID:26491108)
GO_REF:0000107
RGD
Ensembl
PMID:26491108 GO_REF:0000107, MGI:MGI:6158728 NCBI chr 4:157,864,905...157,877,634
Ensembl chr 4:157,864,969...157,877,633
JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B ISO UniProtKB:P25118 (MGI:MGI:6158728|PMID:26491108) RGD PMID:26491108 MGI:MGI:6158728 NCBI chr 5:163,136,390...163,167,299
Ensembl chr 5:163,136,390...163,167,299
JBrowse link
negative regulation of extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cst3 cystatin C ISO (PMID:10545518) RGD PMID:10545518 NCBI chr 3:143,219,671...143,223,544
Ensembl chr 3:143,219,686...143,223,615
JBrowse link
G Dpp4 dipeptidylpeptidase 4 ISO
ISS
(PMID:16651416)
GO_REF:0000024
RGD
UniProt
PMID:16651416 GO_REF:0000024 NCBI chr 3:48,291,055...48,372,672
Ensembl chr 3:48,291,055...48,372,672
JBrowse link
G Fap fibroblast activation protein, alpha ISO (PMID:16651416) RGD PMID:16651416 NCBI chr 3:48,467,781...48,536,242
Ensembl chr 3:48,467,781...48,536,235
JBrowse link
negative regulation of extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fap fibroblast activation protein, alpha ISO (PMID:10455171) RGD PMID:10455171 NCBI chr 3:48,467,781...48,536,242
Ensembl chr 3:48,467,781...48,536,235
JBrowse link
positive regulation of basement membrane assembly involved in embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 cytoplasmic linker associated protein 1 ISO UniProtKB:Q86SQ0|UniProtKB:Q86UU1 (PMID:23940118) RGD PMID:23940118 NCBI chr13:34,365,038...34,584,651
Ensembl chr13:34,365,147...34,584,651
JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 ISO
IEA
(PMID:23940118)
GO_REF:0000107
RGD
Ensembl
PMID:23940118 GO_REF:0000107 NCBI chr 8:122,003,719...122,185,495
Ensembl chr 8:122,003,916...122,185,495
JBrowse link
G Dag1 dystroglycan 1 ISO (PMID:23940118) RGD PMID:23940118 NCBI chr 8:116,980,501...116,993,182
Ensembl chr 8:116,980,497...116,993,193
JBrowse link
G Phldb1 pleckstrin homology-like domain, family B, member 1 IEA
ISO
GO_REF:0000107
UniProtKB:Q7Z460|UniProtKB:Q86SQ0 (PMID:23940118)
Ensembl
RGD
PMID:23940118 GO_REF:0000107 NCBI chr 8:48,997,189...49,045,176
Ensembl chr 8:48,997,184...49,045,154
JBrowse link
G Phldb2 pleckstrin homology-like domain, family B, member 2 ISO
IEA
UniProtKB:Q7Z460|UniProtKB:Q86UU1 (PMID:23940118)
GO_REF:0000107
RGD
Ensembl
PMID:23940118 GO_REF:0000107 NCBI chr11:60,042,879...60,051,229
Ensembl chr11:57,265,732...57,481,589
JBrowse link
positive regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Colgalt1 collagen beta(1-O)galactosyltransferase 1 ISO (PMID:27402836) RGD PMID:27402836 NCBI chr16:20,039,969...20,052,277
Ensembl chr16:20,039,969...20,052,276
JBrowse link
G Rb1 RB transcriptional corepressor 1 IEA
ISO
GO_REF:0000107
(MGI:MGI:6112863|PMID:29304157)
Ensembl
RGD
PMID:29304157 GO_REF:0000107, MGI:MGI:6112863 NCBI chr15:55,081,582...55,209,060
Ensembl chr15:55,083,140...55,209,342
JBrowse link
positive regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Emilin1 elastin microfibril interfacer 1 ISO (MGI:MGI:5605894|PMID:25056700) RGD PMID:25056700 MGI:MGI:5605894 NCBI chr 6:26,821,249...26,829,013
Ensembl chr 6:26,821,255...26,828,972
JBrowse link
G Rgcc regulator of cell cycle ISO (PMID:21307346) RGD PMID:21307346 NCBI chr15:61,551,861...61,564,695
Ensembl chr15:61,551,861...61,564,695
JBrowse link
G Smad3 SMAD family member 3 ISO (PMID:21307346) RGD PMID:21307346 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO MGI:MGI:2176205|MGI:MGI:2385468 (MGI:MGI:4848001|PMID:20881014) RGD PMID:20881014 MGI:MGI:4848001 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
positive regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen IDA RGD PMID:21419085 RGD:5129171 NCBI chr19:57,321,594...57,333,460
Ensembl chr19:57,321,640...57,333,433
JBrowse link
G Cpb2 carboxypeptidase B2 IMP RGD PMID:23369837 RGD:7243115 NCBI chr15:57,290,849...57,339,762
Ensembl chr15:57,290,849...57,339,760
JBrowse link
G Rgcc regulator of cell cycle ISO (PMID:19158077) RGD PMID:19158077 NCBI chr15:61,551,861...61,564,695
Ensembl chr15:61,551,861...61,564,695
JBrowse link
positive regulation of extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carmil2 capping protein regulator and myosin 1 linker 2 ISO (PMID:26466680), (PMID:26578515) RGD PMID:26466680, PMID:26578515 NCBI chr19:37,652,383...37,665,333
Ensembl chr19:37,652,969...37,668,019
JBrowse link
G Clasp1 cytoplasmic linker associated protein 1 ISO (PMID:24859005) RGD PMID:24859005 NCBI chr13:34,365,038...34,584,651
Ensembl chr13:34,365,147...34,584,651
JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 ISO
IEA
(PMID:24859005)
GO_REF:0000107
RGD
Ensembl
PMID:24859005 GO_REF:0000107 NCBI chr 8:122,003,719...122,185,495
Ensembl chr 8:122,003,916...122,185,495
JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 ISO (MGI:MGI:2158097|PMID:11723120) RGD PMID:11723120 MGI:MGI:2158097 NCBI chr13:88,311,639...88,436,561
Ensembl chr13:88,317,145...88,436,789
JBrowse link
G Fscn1 fascin actin-bundling protein 1 ISO
IEA
ISS
(PMID:20137952)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:20137952 GO_REF:0000024, GO_REF:0000107 NCBI chr12:13,655,459...13,668,595
Ensembl chr12:13,656,554...13,668,515
JBrowse link
G Il6 interleukin 6 ISO (PMID:26587789) RGD PMID:26587789 NCBI chr 4:3,043,231...3,047,807
Ensembl chr 4:3,043,231...3,047,807
JBrowse link
G Meltf melanotransferrin ISO (PMID:16713448) RGD PMID:16713448 NCBI chr11:72,135,311...72,158,106
Ensembl chr11:72,135,668...72,157,522
JBrowse link
G Pdpn podoplanin ISO
IBA
ISS
(PMID:25486435)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:25486435, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:161,947,137...161,981,441
Ensembl chr 5:161,947,137...161,981,441
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO (MGI:MGI:5688835|PMID:21984612) RGD PMID:21984612 MGI:MGI:5688835 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
positive regulation of extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase IMP RGD PMID:19846571 RGD:8693597 NCBI chr 3:10,041,820...10,145,076
Ensembl chr 3:10,041,826...10,144,388
JBrowse link
G Cflar CASP8 and FADD-like apoptosis regulator IMP RGD PMID:24691542 RGD:11341715 NCBI chr 9:65,534,608...65,586,395
Ensembl chr 9:65,534,704...65,587,251
JBrowse link
G Rb1 RB transcriptional corepressor 1 ISO (MGI:MGI:6112863|PMID:29304157) RGD PMID:29304157 MGI:MGI:6112863 NCBI chr15:55,081,582...55,209,060
Ensembl chr15:55,083,140...55,209,342
JBrowse link
regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aebp1 AE binding protein 1 ISS
ISO
IEA
GO_REF:0000024
(PMID:29606302)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:29606302 GO_REF:0000024, GO_REF:0000107 NCBI chr14:86,101,253...86,111,323
Ensembl chr14:86,101,277...86,111,306
JBrowse link
regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO UniProtKB:P00797 (PMID:17416596) RGD PMID:17416596 NCBI chr19:57,321,594...57,333,460
Ensembl chr19:57,321,640...57,333,433
JBrowse link
G Has2 hyaluronan synthase 2 IMP RGD PMID:27094859 RGD:12910548 NCBI chr 7:96,438,046...96,464,049
Ensembl chr 7:96,438,046...96,464,049
JBrowse link
G Notch1 notch receptor 1 ISO (MGI:MGI:5298073|PMID:21311046) RGD PMID:21311046 MGI:MGI:5298073 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ric1 RIC1 homolog, RAB6A GEF complex partner 1 ISO (PMID:31932796) RGD PMID:31932796 NCBI chr 1:247,688,778...247,784,219
Ensembl chr 1:247,688,789...247,781,875
JBrowse link
regulation of extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddr1 discoidin domain receptor tyrosine kinase 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3629583|PMID:12065315)
(PMID:12065315)
Ensembl
UniProt
RGD
PMID:12065315 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3629583 NCBI chr20:3,553,430...3,574,959
Ensembl chr20:3,552,929...3,575,780
JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor IMP RGD PMID:16738537 RGD:2313717 NCBI chr 8:33,756,634...33,879,625
Ensembl chr 8:33,816,386...33,879,625
JBrowse link
G Fgfr4 fibroblast growth factor receptor 4 ISO
ISS
(PMID:20876804)
GO_REF:0000024
RGD
UniProt
PMID:20876804 GO_REF:0000024 NCBI chr17:9,990,072...10,004,339
Ensembl chr17:9,990,078...10,004,321
JBrowse link
regulation of extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase ISO MGI:MGI:87860 (MGI:MGI:4840122|PMID:20980600) RGD PMID:20980600 MGI:MGI:4840122 NCBI chr 3:10,041,820...10,145,076
Ensembl chr 3:10,041,826...10,144,388
JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase ISO MGI:MGI:87859 (MGI:MGI:4840122|PMID:20980600) RGD PMID:20980600 MGI:MGI:4840122 NCBI chr13:74,154,533...74,333,244
Ensembl chr13:74,154,835...74,333,244
JBrowse link
G Angptl7 angiopoietin like 7 ISO (PMID:21199193) RGD PMID:21199193 NCBI chr 5:165,311,794...165,318,361
Ensembl chr 5:165,312,130...165,316,652
JBrowse link
G Itgb3 integrin subunit beta 3 ISO MGI:MGI:2175913 (MGI:MGI:5462513|PMID:22984613) RGD PMID:22984613 MGI:MGI:5462513 NCBI chr10:92,667,869...92,783,413
Ensembl chr10:92,667,869...92,783,410
JBrowse link
G Lemd3 LEM domain containing 3 ISO MGI:MGI:3703328 (MGI:MGI:3702795|PMID:16943282) RGD PMID:16943282 MGI:MGI:3702795 NCBI chr 7:62,976,671...63,045,860
Ensembl chr 7:62,996,336...63,045,728
JBrowse link
G Slc2a10 solute carrier family 2 member 10 ISO (PMID:26376865) RGD PMID:26376865 NCBI chr 3:162,182,156...162,194,610
Ensembl chr 3:162,181,974...162,194,804
JBrowse link
G Tcf15 transcription factor 15 ISO MGI:MGI:1929775 (MGI:MGI:5522599|PMID:24038871) RGD PMID:24038871 MGI:MGI:5522599 NCBI chr 3:147,643,250...147,649,511
Ensembl chr 3:147,643,250...147,649,504
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO MGI:MGI:1888389 (MGI:MGI:5140242|PMID:21780244) RGD PMID:21780244 MGI:MGI:5140242 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
vitelline membrane formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule ISO MGI:MGI:1934258 (MGI:MGI:3766861|PMID:17881493) RGD PMID:17881493 MGI:MGI:3766861 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20017
    cellular process 18791
      cellular component organization or biogenesis 6765
        cellular component organization 6509
          extracellular structure organization 315
            extracellular matrix organization + 314
            intercellular bridge organization + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.