Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:ubiquitin binding
go back to main search page
Accession:GO:0043130 term browser browse the term
Definition:Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation.
Synonyms:xref: reactome:R-HSA-1169404 "Transfer of ISG15 from E1 to E2 (UBCH8)";   reactome:R-HSA-205008 "Polyubiquitinated NRIF binds to p62 (Sequestosome)";   reactome:R-HSA-983152 "Transfer of ubiquitin from E1 to E2"


show annotations for term's descendants       view all columns           Sort by:
 
ubiquitin binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC112018.1 RGD:13792537
G Adrm1 adhesion regulating molecule 1 JBrowse link 3 175,548,181 175,552,943 RGD:13792537
G Ascc2 activating signal cointegrator 1 complex subunit 2 JBrowse link 14 84,873,507 84,913,923 RGD:13792537
G Aup1 AUP1, lipid droplet regulating VLDL assembly factor JBrowse link 4 113,887,030 113,890,103 RGD:13792537
G Birc2 baculoviral IAP repeat-containing 2 JBrowse link 8 6,014,014 6,036,668 RGD:1624291
G Bub3 BUB3 mitotic checkpoint protein JBrowse link 1 203,526,853 203,537,459 RGD:13792537
G Cks1b CDC28 protein kinase regulatory subunit 1B JBrowse link 2 188,740,564 188,745,144 RGD:13792537
G Cks2 CDC28 protein kinase regulatory subunit 2 JBrowse link 17 13,587,664 13,593,423 RGD:13792537
G Cxcr4 C-X-C motif chemokine receptor 4 JBrowse link 13 45,314,952 45,318,856 RGD:1624291
G Ddi2 DNA damage inducible 1 homolog 2 JBrowse link 5 160,230,958 160,282,836 RGD:1624291
G Dnajb2 DnaJ heat shock protein family (Hsp40) member B2 JBrowse link 9 82,436,453 82,444,669 RGD:1624291
G Faap20 FA core complex associated protein 20 JBrowse link 5 172,648,171 172,655,576 RGD:1600115
G Faf1 Fas associated factor 1 JBrowse link 5 129,370,767 129,738,393 RGD:1624291
RGD:1600115
G Faf2 Fas associated factor family member 2 JBrowse link 17 10,485,650 10,527,886 RGD:1624291
RGD:1600115
G Fbxo7 F-box protein 7 JBrowse link 7 23,815,246 23,843,505 RGD:1624291
G Fbxw7 F-box and WD repeat domain containing 7 JBrowse link 2 184,230,191 184,309,805 RGD:13792537
G Gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 JBrowse link 10 104,137,655 104,156,576 RGD:1624291
G Hdac6 histone deacetylase 6 JBrowse link X 15,295,372 15,316,673 RGD:1624291
G Hspb1 heat shock protein family B (small) member 1 JBrowse link 12 23,839,390 23,841,051 RGD:1304417
G LOC294154 similar to chromosome 6 open reading frame 106 isoform a JBrowse link 20 7,331,321 7,397,588 RGD:13792537
G Marchf7 membrane associated ring-CH-type finger 7 JBrowse link 3 46,284,961 46,325,230 RGD:1600115
RGD:13792537
RGD:1624291
G Mdm2 MDM2 proto-oncogene JBrowse link 7 60,719,060 60,743,618 RGD:1624291
G Mvb12a multivesicular body subunit 12A JBrowse link 16 19,973,611 19,978,479 RGD:1624291
G Mvb12b multivesicular body subunit 12B JBrowse link 3 12,780,196 12,944,542 RGD:1624291
G Nbr1 NBR1, autophagy cargo receptor JBrowse link 10 89,455,202 89,483,791 RGD:1600115
RGD:13792537
RGD:1624291
G Nedd4 NEDD4 E3 ubiquitin protein ligase JBrowse link 8 79,323,408 79,408,842 RGD:1624291
RGD:1600115
G Nploc4 NPL4 homolog, ubiquitin recognition factor JBrowse link 10 109,553,518 109,610,087 RGD:8554384
RGD:13792537
G Nsfl1c NSFL1 cofactor JBrowse link 3 146,980,923 147,005,478 RGD:8554384
RGD:13792537
G Nup62 nucleoporin 62 JBrowse link 1 100,811,140 100,827,119 RGD:1624291
RGD:1600115
G Optn optineurin JBrowse link 17 77,167,700 77,218,374 RGD:7775023
G Otub1 OTU deubiquitinase, ubiquitin aldehyde binding 1 JBrowse link 1 222,451,674 222,459,952 RGD:1624291
RGD:13792537
RGD:1600115
G Otub2 OTU deubiquitinase, ubiquitin aldehyde binding 2 JBrowse link 6 127,282,445 127,301,086 RGD:13792537
G Otulinl OTU deubiquitinase with linear linkage specificity like JBrowse link 2 80,383,642 80,408,672 RGD:1600115
RGD:1624291
G Plaa phospholipase A2, activating protein JBrowse link 5 113,548,913 113,578,928 RGD:13792537
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 1 48,880,015 50,069,998 RGD:1624291
RGD:1600115
G Rad23a RAD23 homolog A, nucleotide excision repair protein JBrowse link 19 25,949,488 25,956,677 RGD:13792537
G Rad23b RAD23 homolog B, nucleotide excision repair protein JBrowse link 5 72,103,704 72,141,701 RGD:13792537
G Rae1 ribonucleic acid export 1 JBrowse link 3 171,012,984 171,030,392 RGD:13792537
G Rbck1 RANBP2-type and C3HC4-type zinc finger containing 1 JBrowse link 3 147,793,014 147,809,941 RGD:1600115
RGD:13792537
RGD:1624291
G Rnf168 ring finger protein 168 JBrowse link 11 71,721,242 71,743,421 RGD:1600115
RGD:1624291
G Rnf185 ring finger protein 185 JBrowse link 14 83,648,400 83,685,273 RGD:1600115
RGD:1624291
G Rnf19b ring finger protein 19B JBrowse link 5 147,246,032 147,270,892 RGD:1624291
G Rnf31 ring finger protein 31 JBrowse link 15 34,270,037 34,282,385 RGD:1624291
G Rnf8 ring finger protein 8 JBrowse link 20 8,285,380 8,309,858 RGD:1600115
G Rnft1 ring finger protein, transmembrane 1 JBrowse link 10 73,807,455 73,821,178 RGD:1624291
G Sirt2 sirtuin 2 JBrowse link 1 86,948,866 86,971,954 RGD:1600115
RGD:1624291
G Smad3 SMAD family member 3 JBrowse link 8 68,569,530 68,678,349 RGD:1624291
G Sprtn SprT-like N-terminal domain JBrowse link 19 57,649,901 57,657,158 RGD:1600115
RGD:1624291
G Sqstm1 sequestosome 1 JBrowse link 10 35,704,728 35,716,316 RGD:1624291
RGD:1600115
G Tnfaip3 TNF alpha induced protein 3 JBrowse link 1 14,401,103 14,416,369 RGD:1624291
G Tollip toll interacting protein JBrowse link 1 214,823,993 214,844,861 RGD:13792537
G Top2a DNA topoisomerase II alpha JBrowse link 10 86,901,467 86,930,947 RGD:1600115
RGD:1624291
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 JBrowse link 3 150,910,398 150,918,525 RGD:1624291
RGD:1600115
G Trim32 tripartite motif-containing 32 JBrowse link 5 81,431,554 81,449,023 RGD:1624291
G Tsg101 tumor susceptibility 101 JBrowse link 1 102,941,151 102,971,017 RGD:1624291
G Ubap1 ubiquitin-associated protein 1 JBrowse link 5 57,738,309 57,778,724 RGD:1624291
RGD:13792537
RGD:1600115
G Ubap1l ubiquitin associated protein 1-like JBrowse link 8 70,876,516 70,895,723 RGD:13792537
G Ube2l6 ubiquitin-conjugating enzyme E2L 6 JBrowse link 3 72,191,533 72,206,190 RGD:1624291
G Ube2n ubiquitin-conjugating enzyme E2N JBrowse link 7 36,610,147 36,640,190 RGD:1624291
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 JBrowse link 7
7
76,789,110
76,839,661
76,835,517
76,907,441
RGD:1600115
G Ubxn1 UBX domain protein 1 JBrowse link 1 225,067,953 225,071,944 RGD:1624291
G Ubxn11 UBX domain protein 11 JBrowse link 5 152,332,993 152,356,647 RGD:13792537
G Ubxn2a UBX domain protein 2A JBrowse link 6 28,969,471 28,997,987 RGD:13792537
G Ubxn2b UBX domain protein 2B JBrowse link 5 19,285,368 19,314,199 RGD:13792537
G Ubxn7 UBX domain protein 7 JBrowse link 11 71,662,786 71,695,031 RGD:1624291
G Uchl1 ubiquitin C-terminal hydrolase L1 JBrowse link 14 43,133,224 43,143,942 RGD:1624291
G Uchl3 ubiquitin C-terminal hydrolase L3 JBrowse link 15 86,153,624 86,198,127 RGD:1624291
G Usp13 ubiquitin specific peptidase 13 JBrowse link 2 119,197,153 119,317,507 RGD:1624291
G Usp16 ubiquitin specific peptidase 16 JBrowse link 11 27,101,213 27,130,345 RGD:1624291
RGD:1600115
G Usp33 ubiquitin specific peptidase 33 JBrowse link 2 257,567,179 257,602,817 RGD:1624291
G Usp5 ubiquitin specific peptidase 5 JBrowse link 4 157,332,735 157,347,803 RGD:1624291
G Uspl1 ubiquitin specific peptidase like 1 JBrowse link 12 6,930,018 6,957,027 RGD:1624291
G Vps28 VPS28 subunit of ESCRT-I JBrowse link 7 117,684,339 117,688,187 RGD:1600115
RGD:1624291
G Vps36 vacuolar protein sorting 36 homolog JBrowse link 16 74,719,642 74,743,921 RGD:1624291
RGD:13792537
RGD:1600115
G Wdr48 WD repeat domain 48 JBrowse link 8 128,577,080 128,610,287 RGD:13792537
G Wdr92 WD repeat domain 92 JBrowse link 14 100,373,129 100,394,143 RGD:13792537
G Zfand2b zinc finger AN1-type containing 2B JBrowse link 9 82,370,887 82,373,843 RGD:1624291
linear polyubiquitin binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma JBrowse link X 156,254,187 156,280,046 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19526
    binding 15909
      protein binding 12626
        ubiquitin-like protein binding 99
          ubiquitin binding 78
            linear polyubiquitin binding 1
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.