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ONTOLOGY REPORT - ANNOTATIONS


Term:ubiquitin binding
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Accession:GO:0043130 term browser browse the term
Definition:Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation.
Synonyms:xref: reactome:R-HSA-1169404 "Transfer of ISG15 from E1 to E2 (UBCH8)";   reactome:R-HSA-205008 "Polyubiquitinated NRIF binds to p62 (Sequestosome)";   reactome:R-HSA-983152 "Transfer of ubiquitin from E1 to E2"


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ubiquitin binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adrm1 adhesion regulating molecule 1 JBrowse link 2 180,171,226 180,176,286 RGD:2290270
G Ascc2 activating signal cointegrator 1 complex subunit 2 JBrowse link 11 4,637,696 4,685,699 RGD:2290270
G Aup1 ancient ubiquitous protein 1 JBrowse link 6 83,054,495 83,057,682 RGD:2290270
G Birc2 baculoviral IAP repeat-containing 2 JBrowse link 9 7,818,226 7,837,131 RGD:2290270
G Bub3 BUB3 mitotic checkpoint protein JBrowse link 7 131,560,367 131,571,895 RGD:2290270
G Cks1b CDC28 protein kinase 1b JBrowse link 3 89,415,472 89,418,291 RGD:2290270
G Cks1brt CDC28 protein kinase 1b, retrogene JBrowse link 8 85,151,924 85,173,622 RGD:2290270
G Cks2 CDC28 protein kinase regulatory subunit 2 JBrowse link 13 51,645,232 51,650,662 RGD:2290270
G Cxcr4 chemokine (C-X-C motif) receptor 4 JBrowse link 1 128,588,199 128,592,299 RGD:2290270
G Ddi2 DNA-damage inducible protein 2 JBrowse link 4 141,683,563 141,723,419 RGD:2290270
G Dnajb2 DnaJ heat shock protein family (Hsp40) member B2 JBrowse link 1 75,236,395 75,245,692 RGD:2290270
G Faap20 Fanconi anemia core complex associated protein 20 JBrowse link 4 155,246,904 155,256,687 RGD:2290270
G Faf1 Fas-associated factor 1 JBrowse link 4 109,676,627 109,963,960 RGD:2290270
G Faf2 Fas associated factor family member 2 JBrowse link 13 54,621,784 54,664,063 RGD:2290270
G Fbxo7 F-box protein 7 JBrowse link 10 86,020,449 86,051,873 RGD:2290270
G Fbxw7 F-box and WD-40 domain protein 7 JBrowse link 3 84,814,990 84,979,198 RGD:2290270
G Gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 JBrowse link 11 115,584,255 115,604,517 RGD:2290270
G Gm9774 predicted pseudogene 9774 JBrowse link 3 92,428,067 92,429,423 RGD:2290270
G Hdac6 histone deacetylase 6 JBrowse link X 7,930,116 7,948,047 RGD:2290270
G Hspb1 heat shock protein 1 JBrowse link 5 135,887,919 135,889,563 RGD:2290270
G Ilrun inflammation and lipid regulator with UBA-like and NBR1-like domains JBrowse link 17 27,751,232 27,820,542 RGD:2290270
G Marchf7 membrane associated ring-CH-type finger 7 JBrowse link 2 60,209,936 60,248,385 RGD:2290270
G Mdm2 transformed mouse 3T3 cell double minute 2 JBrowse link 10 117,688,875 117,710,758 RGD:2290270
G Mvb12a multivesicular body subunit 12A JBrowse link 8 71,542,907 71,548,026 RGD:2290270
G Nbr1 NBR1, autophagy cargo receptor JBrowse link 11 101,552,107 101,581,951 RGD:2290270
G Nploc4 NPL4 homolog, ubiquitin recognition factor JBrowse link 11 120,379,798 120,437,700 RGD:2290270
G Nsfl1c NSFL1 (p97) cofactor (p47) JBrowse link 2 151,494,182 151,511,310 RGD:2290270
G Nup62 nucleoporin 62 JBrowse link 7 44,816,088 44,831,836 RGD:2290270
G Optn optineurin JBrowse link 2 5,020,521 5,064,399 RGD:2290270
G Otub1 OTU domain, ubiquitin aldehyde binding 1 JBrowse link 19 7,198,206 7,206,284 RGD:2290270
G Otub2 OTU domain, ubiquitin aldehyde binding 2 JBrowse link 12 103,376,894 103,406,350 RGD:2290270
G Plaa phospholipase A2, activating protein JBrowse link 4 94,565,139 94,603,247 RGD:2290270
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 17 10,840,359 12,063,370 RGD:2290270
G Rad23a RAD23 homolog A, nucleotide excision repair protein JBrowse link 8 84,834,652 84,840,736 RGD:2290270
G Rad23b RAD23 homolog B, nucleotide excision repair protein JBrowse link 4 55,350,042 55,392,237 RGD:2290270
G Rae1 ribonucleic acid export 1 JBrowse link 2 173,000,116 173,015,739 RGD:2290270
G Rbck1 RanBP-type and C3HC4-type zinc finger containing 1 JBrowse link 2 152,316,334 152,332,663 RGD:2290270
G Rnf168 ring finger protein 168 JBrowse link 16 32,277,461 32,301,442 RGD:2290270
G Rnf185 ring finger protein 185 JBrowse link 11 3,415,973 3,452,956 RGD:2290270
G Rnf19b ring finger protein 19B JBrowse link 4 129,058,144 129,084,526 RGD:2290270
G Rnf31 ring finger protein 31 JBrowse link 14 55,591,713 55,603,674 RGD:2290270
G Rnft1 ring finger protein, transmembrane 1 JBrowse link 11 86,484,657 86,499,007 RGD:2290270
G Sirt2 sirtuin 2 JBrowse link 7 28,766,752 28,788,665 RGD:2290270
G Smad3 SMAD family member 3 JBrowse link 9 63,646,766 63,757,994 RGD:2290270
G Sprtn SprT-like N-terminal domain JBrowse link 8 124,897,771 124,906,161 RGD:2290270
G Sqstm1 sequestosome 1 JBrowse link 11 50,200,152 50,210,820 RGD:2290270
G Tax1bp1 Tax1 (human T cell leukemia virus type I) binding protein 1 JBrowse link 6 52,713,692 52,766,780 RGD:2290270
G Tnfaip3 tumor necrosis factor, alpha-induced protein 3 JBrowse link 10 19,000,910 19,015,410 RGD:2290270
G Tollip toll interacting protein JBrowse link 7 141,881,580 141,902,461 RGD:2290270
G Top2a topoisomerase (DNA) II alpha JBrowse link 11 98,992,947 99,024,199 RGD:2290270
G Trim32 tripartite motif-containing 32 JBrowse link 4 65,604,986 65,616,240 RGD:2290270
G Trp53inp2 transformation related protein 53 inducible nuclear protein 2 JBrowse link 2 155,381,811 155,389,847 RGD:2290270
G Tsg101 tumor susceptibility gene 101 JBrowse link 7 46,888,949 46,926,320 RGD:2290270
G Ubap1 ubiquitin-associated protein 1 JBrowse link 4 41,348,996 41,389,766 RGD:2290270
G Ubap1l ubiquitin-associated protein 1-like JBrowse link 9 65,359,907 65,380,377 RGD:2290270
G Ube2l6 ubiquitin-conjugating enzyme E2L 6 JBrowse link 2 84,798,828 84,810,003 RGD:2290270
G Ube2n ubiquitin-conjugating enzyme E2N JBrowse link 10 95,515,162 95,545,658 RGD:2290270
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 JBrowse link 15 37,967,328 38,078,862 RGD:2290270
G Ubxn1 UBX domain protein 1 JBrowse link 19 8,871,548 8,875,666 RGD:2290270
G Ubxn11 UBX domain protein 11 JBrowse link 4 134,102,500 134,126,784 RGD:2290270
G Ubxn2a UBX domain protein 2A JBrowse link 12 4,876,979 4,907,716 RGD:2290270
G Ubxn2b UBX domain protein 2B JBrowse link 4 6,191,105 6,219,788 RGD:2290270
G Ubxn7 UBX domain protein 7 JBrowse link 16 32,332,200 32,393,747 RGD:2290270
G Uchl1 ubiquitin carboxy-terminal hydrolase L1 JBrowse link 5 66,676,121 66,687,234 RGD:2290270
G Uchl3 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) JBrowse link 14 101,653,892 101,696,125 RGD:2290270
G Usp13 ubiquitin specific peptidase 13 (isopeptidase T-3) JBrowse link 3 32,816,283 32,938,075 RGD:2290270
G Usp16 ubiquitin specific peptidase 16 JBrowse link 16 87,454,985 87,483,515 RGD:2290270
G Usp5 ubiquitin specific peptidase 5 (isopeptidase T) JBrowse link 6 124,815,019 124,829,484 RGD:2290270
G Vps28 vacuolar protein sorting 28 JBrowse link 15 76,622,086 76,626,084 RGD:2290270
G Vps36 vacuolar protein sorting 36 JBrowse link 8 22,192,833 22,220,953 RGD:2290270
G Wdr48 WD repeat domain 48 JBrowse link 9 119,894,895 119,926,586 RGD:2290270
G Wdr92 WD repeat domain 92 JBrowse link 11 17,211,893 17,235,200 RGD:2290270
G Zfand2b zinc finger, AN1 type domain 2B JBrowse link 1 75,168,646 75,171,626 RGD:2290270
linear polyubiquitin binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ikbkg inhibitor of kappaB kinase gamma JBrowse link X 74,393,233 74,456,792 RGD:2290270

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Term Annotations click to browse term
  molecular_function 22438
    binding 13332
      protein binding 9060
        ubiquitin-like protein binding 95
          ubiquitin binding 74
            linear polyubiquitin binding 1
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.