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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleotide salvage
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Accession:GO:0043173 term browser browse the term
Definition:Any process which produces a nucleotide, a compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety, from derivatives of it without de novo synthesis.
Synonyms:xref: Wikipedia:Nucleotide_salvage


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AMP salvage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr15:3,033,535...3,435,888
Ensembl chr15:3,033,495...3,435,888
JBrowse link
G Aprt adenine phosphoribosyl transferase IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr19:55,387,288...55,389,256
Ensembl chr19:55,387,288...55,389,256
JBrowse link
CTP salvage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uck1 uridine-cytidine kinase 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:11,271,874...11,277,757
Ensembl chr 3:11,271,885...11,277,757
JBrowse link
G Uck2 uridine-cytidine kinase 2 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr13:85,376,716...85,443,976
Ensembl chr13:85,376,716...85,443,976
JBrowse link
G Uckl1 uridine-cytidine kinase 1-like 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:177,066,022...177,078,611
Ensembl chr 3:177,066,014...177,078,594
JBrowse link
GDP-L-fucose salvage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fcsk fucose kinase ISO
IBA
(PMID:30503518)
PMID:21873635
RGD PMID:30503518, PMID:21873635 RGD:13792537 NCBI chr19:43,338,146...43,357,826
Ensembl chr19:43,338,166...43,357,822
JBrowse link
GMP salvage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hprt1 hypoxanthine phosphoribosyltransferase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:158,196,640...158,228,815
Ensembl chr  X:158,197,149...158,228,749
JBrowse link
G LOC103689983 hypoxanthine-guanine phosphoribosyltransferase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:158,623,231...158,655,277
Ensembl chr  X:158,623,240...158,655,198
JBrowse link
IMP salvage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd1 adenosine monophosphate deaminase 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:205,568,934...205,589,961
Ensembl chr 2:205,568,935...205,590,021
JBrowse link
G Ampd2 adenosine monophosphate deaminase 2 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:210,861,624...210,874,348
Ensembl chr 2:210,861,625...210,874,304
JBrowse link
G Ampd3 adenosine monophosphate deaminase 3 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:175,585,301...175,630,479
Ensembl chr 1:175,586,097...175,630,467
JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr  X:158,196,640...158,228,815
Ensembl chr  X:158,197,149...158,228,749
JBrowse link
G LOC103689983 hypoxanthine-guanine phosphoribosyltransferase IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr  X:158,623,231...158,655,277
Ensembl chr  X:158,623,240...158,655,198
JBrowse link
G Prtfdc1 phosphoribosyl transferase domain containing 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr17:87,926,242...88,037,040
Ensembl chr17:87,927,058...88,037,040
JBrowse link
NAD salvage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Naprt nicotinate phosphoribosyltransferase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:116,922,979...116,926,436
Ensembl chr 7:116,922,944...116,926,555
JBrowse link
purine nucleotide salvage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO (PMID:9361033) RGD PMID:9361033 NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
JBrowse link
UMP salvage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uck1 uridine-cytidine kinase 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:11,271,874...11,277,757
Ensembl chr 3:11,271,885...11,277,757
JBrowse link
G Uck2 uridine-cytidine kinase 2 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr13:85,376,716...85,443,976
Ensembl chr13:85,376,716...85,443,976
JBrowse link
G Uckl1 uridine-cytidine kinase 1-like 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:177,066,022...177,078,611
Ensembl chr 3:177,066,014...177,078,594
JBrowse link
G Upp1 uridine phosphorylase 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr14:89,314,234...89,334,060
Ensembl chr14:89,314,176...89,334,276
JBrowse link
G Upp2 uridine phosphorylase 2 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:44,806,106...44,846,464
Ensembl chr 3:44,806,106...44,846,464
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      cellular metabolic process 11065
        cellular metabolic compound salvage 26
          nucleotide salvage 16
            GDP-L-fucose salvage 1
            purine nucleotide salvage + 9
            pyridine nucleotide salvage + 1
            pyrimidine nucleotide salvage + 5
Path 2
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      cellular metabolic process 11065
        cellular aromatic compound metabolic process 5708
          nucleobase-containing compound metabolic process 5483
            nucleobase-containing small molecule metabolic process 590
              nucleoside phosphate metabolic process 510
                nucleotide metabolic process 503
                  nucleotide biosynthetic process 247
                    nucleotide salvage 16
                      GDP-L-fucose salvage 1
                      purine nucleotide salvage + 9
                      pyridine nucleotide salvage + 1
                      pyrimidine nucleotide salvage + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.