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ONTOLOGY REPORT - ANNOTATIONS


Term:skeletal muscle tissue regeneration
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Accession:GO:0043403 term browser browse the term
Definition:The regrowth of skeletal muscle tissue to repair injured or damaged muscle fibers in the postnatal stage.
Synonyms:related_synonym: myofiber turnover


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skeletal muscle tissue regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bin3 bridging integrator 3 ISO MGI:MGI:3512131 (MGI:MGI:5517720|PMID:23872330) RGD PMID:23872330 MGI:MGI:5517720 NCBI chr15:51,799,339...51,818,697
Ensembl chr15:51,779,839...51,818,699
JBrowse link
G Cflar CASP8 and FADD-like apoptosis regulator ISO (MGI:MGI:5707584|PMID:21364645) RGD PMID:21364645 MGI:MGI:5707584 NCBI chr 9:65,534,608...65,586,395
Ensembl chr 9:65,534,704...65,587,251
JBrowse link
G Dag1 dystroglycan 1 IEP RGD PMID:12086334 RGD:11541049 NCBI chr 8:116,980,501...116,993,182
Ensembl chr 8:116,980,497...116,993,193
JBrowse link
G Dmd dystrophin IEP RGD PMID:12086334 RGD:11541049 NCBI chr  X:51,149,358...53,519,271
Ensembl chr  X:51,286,737...53,519,259
JBrowse link
G Dysf dysferlin ISO MGI:MGI:1857883 (MGI:MGI:3843552|PMID:19286669) RGD PMID:19286669 MGI:MGI:3843552 NCBI chr 4:115,700,942...115,901,873
Ensembl chr 4:115,712,850...115,901,873
JBrowse link
G Eno3 enolase 3 IEP RGD PMID:16752196 RGD:2301764 NCBI chr10:57,278,271...57,283,661
Ensembl chr10:57,278,307...57,283,653
JBrowse link
G Gja1 gap junction protein, alpha 1 ISO (MGI:MGI:3513707|PMID:15601660) RGD PMID:15601660 MGI:MGI:3513707 NCBI chr20:37,876,650...37,889,097
Ensembl chr20:37,876,650...37,889,089
JBrowse link
G Gpx1 glutathione peroxidase 1 ISO
IEA
MGI:MGI:2158814 (MGI:MGI:3662804|PMID:16962942)
GO_REF:0000107
RGD
Ensembl
PMID:16962942 GO_REF:0000107, MGI:MGI:3662804 NCBI chr 8:117,117,430...117,118,528
Ensembl chr 8:117,117,430...117,118,522
JBrowse link
G Ifrd1 interferon-related developmental regulator 1 ISO
IEA
MGI:MGI:3043556 (MGI:MGI:3041924|PMID:15060170)
GO_REF:0000107
RGD
Ensembl
PMID:15060170 GO_REF:0000107, MGI:MGI:3041924 NCBI chr 6:60,132,025...60,151,354
Ensembl chr 6:60,132,024...60,151,420
JBrowse link
G Klf5 Kruppel-like factor 5 ISO MGI:MGI:4353154|MGI:MGI:4421792 (MGI:MGI:5823533|PMID:27743478) RGD PMID:27743478 MGI:MGI:5823533 NCBI chr15:83,703,796...83,722,921
Ensembl chr15:83,703,791...83,722,921
JBrowse link
G Kpna1 karyopherin subunit alpha 1 ISO MGI:MGI:3775202 (MGI:MGI:5823554|PMID:27434733) RGD PMID:27434733 MGI:MGI:5823554 NCBI chr11:67,652,573...67,717,180
Ensembl chr11:67,652,577...67,703,025
JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 ISO (MGI:MGI:5547845|PMID:24132234) RGD PMID:24132234 MGI:MGI:5547845 NCBI chr19:12,481,563...12,945,320
Ensembl chr19:12,481,540...12,942,963
JBrowse link
G Mstn myostatin IEP RGD PMID:11206133 RGD:2303599 NCBI chr 9:53,310,977...53,315,804
Ensembl chr 9:53,309,598...53,315,915
JBrowse link
G Mtpn myotrophin IEP RGD PMID:12467730 RGD:632798 NCBI chr 4:63,012,009...63,039,422
Ensembl chr 4:63,012,011...63,039,422
JBrowse link
G Myf6 myogenic factor 6 IMP RGD PMID:12707053 RGD:1600530 NCBI chr 7:49,739,643...49,741,490
Ensembl chr 7:49,739,646...49,741,540
JBrowse link
G Mymk myomaker, myoblast fusion factor ISO MGI:MGI:4841439 (MGI:MGI:5608518|PMID:25085416) RGD PMID:25085416 MGI:MGI:5608518 NCBI chr 3:5,608,243...5,617,689
Ensembl chr 3:5,608,243...5,617,225
JBrowse link
G Mymx myomixer, myoblast fusion factor ISO (MGI:MGI:6153677|PMID:29581287) RGD PMID:29581287 MGI:MGI:6153677 NCBI chr 9:17,781,397...17,783,074
Ensembl chr 9:17,782,395...17,782,664
JBrowse link
G Myod1 myogenic differentiation 1 IEP
ISO
IMP
(MGI:MGI:5706660|PMID:26658965) RGD PMID:26658965, PMID:18077604, PMID:12063168 MGI:MGI:5706660, RGD:9686074, RGD:729226 NCBI chr 1:102,396,538...102,399,248
Ensembl chr 1:102,396,538...102,399,248
JBrowse link
G Myog myogenin IEP RGD PMID:10867795 RGD:9686125 NCBI chr13:51,126,459...51,129,048
Ensembl chr13:51,126,459...51,129,048
JBrowse link
G Naca nascent polypeptide associated complex subunit alpha ISO (MGI:MGI:4867362|PMID:21071677) RGD PMID:21071677 MGI:MGI:4867362 NCBI chr 7:2,458,283...2,470,674
Ensembl chr 7:2,458,264...2,470,674
JBrowse link
G Pax7 paired box 7 ISO (MGI:MGI:1206147|PMID:9608680) RGD PMID:9608680 MGI:MGI:1206147 NCBI chr 5:158,211,001...158,313,510
Ensembl chr 5:158,214,616...158,313,426
JBrowse link
G Pkm pyruvate kinase M1/2 IDA RGD PMID:145474 RGD:2303143 NCBI chr 8:64,480,963...64,502,957
Ensembl chr 8:64,481,172...64,502,722
JBrowse link
G Plau plasminogen activator, urokinase IMP RGD PMID:12919869 RGD:1581928 NCBI chr15:3,644,296...3,650,765
Ensembl chr15:3,644,769...3,650,819
JBrowse link
G Plaur plasminogen activator, urokinase receptor IEP RGD PMID:12919869 RGD:1581928 NCBI chr 1:81,328,171...81,344,954
Ensembl chr 1:81,328,183...81,344,708
JBrowse link
G Selenon selenoprotein N ISO MGI:MGI:4946396 (MGI:MGI:4936779|PMID:21131290) RGD PMID:21131290 MGI:MGI:4936779 NCBI chr 5:152,748,497...152,765,489
Ensembl chr 5:152,750,284...152,762,165
JBrowse link
G Sgca sarcoglycan, alpha IEP RGD PMID:12086334 RGD:11541049 NCBI chr10:82,770,905...82,785,142
Ensembl chr10:82,770,905...82,785,142
JBrowse link
G Sox15 SRY-box transcription factor 15 ISO MGI:MGI:3056078 (MGI:MGI:3055629|PMID:15367664) RGD PMID:15367664 MGI:MGI:3055629 NCBI chr10:56,260,514...56,263,503
Ensembl chr10:56,260,514...56,263,503
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex ISO MGI:MGI:2135565|MGI:MGI:5645258 (MGI:MGI:6094668|PMID:27159388) RGD PMID:27159388 MGI:MGI:6094668 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link
G Vim vimentin IEP RGD PMID:18941770 RGD:6480441 NCBI chr17:80,882,715...80,891,200
Ensembl chr17:80,882,666...80,891,212
JBrowse link
G Wnt10b Wnt family member 10B ISO MGI:MGI:3582610 (MGI:MGI:3581945|PMID:15673614) RGD PMID:15673614 MGI:MGI:3581945 NCBI chr 7:140,448,284...140,466,159
Ensembl chr 7:140,448,465...140,454,268
JBrowse link
myoblast differentiation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III ISO MGI:MGI:3589208 (MGI:MGI:5312165|PMID:22358842) RGD PMID:22358842 MGI:MGI:5312165 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Mapk14 mitogen activated protein kinase 14 ISO (MGI:MGI:4838005|PMID:20610565) RGD PMID:20610565 MGI:MGI:4838005 NCBI chr20:5,933,290...5,995,137
Ensembl chr20:5,933,303...5,995,137
JBrowse link
G Mir489 microRNA 489 ISO (MGI:MGI:5312165|PMID:22358842) RGD PMID:22358842 MGI:MGI:5312165 NCBI chr 4:28,659,523...28,659,628
Ensembl chr 4:28,659,523...28,659,628
JBrowse link
G Wnt10b Wnt family member 10B ISO MGI:MGI:3582610 (MGI:MGI:3581945|PMID:15673614) RGD PMID:15673614 MGI:MGI:3581945 NCBI chr 7:140,448,284...140,466,159
Ensembl chr 7:140,448,465...140,454,268
JBrowse link
myoblast fusion involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd81 Cd81 molecule ISS
ISO
IEA
GO_REF:0000024
(MGI:MGI:6282938|PMID:23575678)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23575678 GO_REF:0000024, GO_REF:0000107, MGI:MGI:6282938 NCBI chr 1:216,237,663...216,253,460
Ensembl chr 1:216,237,697...216,253,311
JBrowse link
G Cd9 CD9 molecule ISS
ISO
GO_REF:0000024
(MGI:MGI:6282938|PMID:23575678)
UniProt
RGD
PMID:23575678 GO_REF:0000024, MGI:MGI:6282938 NCBI chr 4:157,977,163...158,010,091
Ensembl chr 4:157,977,162...158,010,166
JBrowse link
G Mymk myomaker, myoblast fusion factor ISO MGI:MGI:4841439 (MGI:MGI:5608518|PMID:25085416) RGD PMID:25085416 MGI:MGI:5608518 NCBI chr 3:5,608,243...5,617,689
Ensembl chr 3:5,608,243...5,617,225
JBrowse link
G Mymx myomixer, myoblast fusion factor ISO (MGI:MGI:6153677|PMID:29581287) RGD PMID:29581287 MGI:MGI:6153677 NCBI chr 9:17,781,397...17,783,074
Ensembl chr 9:17,782,395...17,782,664
JBrowse link
G Ptgfrn prostaglandin F2 receptor inhibitor ISS
ISO
IEA
GO_REF:0000024
(MGI:MGI:6282938|PMID:23575678)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23575678 GO_REF:0000024, GO_REF:0000107, MGI:MGI:6282938 NCBI chr 2:203,423,143...203,494,391
Ensembl chr 2:203,423,143...203,494,391
JBrowse link
myoblast migration involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akirin1 akirin 1 ISO (MGI:MGI:3850794|PMID:19406121) RGD PMID:19406121 MGI:MGI:3850794 NCBI chr 5:141,415,226...141,430,627
Ensembl chr 5:141,415,075...141,430,659
JBrowse link
G Anxa1 annexin A1 ISO
IBA
(MGI:MGI:5619736|PMID:23144744)
PMID:21873635
RGD PMID:23144744, PMID:21873635 MGI:MGI:5619736, RGD:13792537 NCBI chr 1:237,893,983...237,910,002
Ensembl chr 1:237,893,966...237,910,012
JBrowse link
G Bin3 bridging integrator 3 ISO MGI:MGI:3512131 (MGI:MGI:5517720|PMID:23872330) RGD PMID:23872330 MGI:MGI:5517720 NCBI chr15:51,799,339...51,818,697
Ensembl chr15:51,779,839...51,818,699
JBrowse link
G Mstn myostatin ISS
ISO
GO_REF:0000024
(MGI:MGI:3850794|PMID:19406121)
UniProt
RGD
PMID:19406121 GO_REF:0000024, MGI:MGI:3850794 NCBI chr 9:53,310,977...53,315,804
Ensembl chr 9:53,309,598...53,315,915
JBrowse link
myotube differentiation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl9 BCL9, transcription coactivator ISO MGI:MGI:1933114 (MGI:MGI:4368064|PMID:19699733) RGD PMID:19699733 MGI:MGI:4368064 NCBI chr 2:199,334,644...199,420,083
Ensembl chr 2:199,334,664...199,354,793
JBrowse link
G Klf5 Kruppel-like factor 5 ISO MGI:MGI:4353154|MGI:MGI:4421792 (MGI:MGI:5823533|PMID:27743478) RGD PMID:27743478 MGI:MGI:5823533 NCBI chr15:83,703,796...83,722,921
Ensembl chr15:83,703,791...83,722,921
JBrowse link
G Myod1 myogenic differentiation 1 ISO
IEA
(MGI:MGI:48687|PMID:1348494)
GO_REF:0000107
RGD
Ensembl
PMID:1348494 GO_REF:0000107, MGI:MGI:48687 NCBI chr 1:102,396,538...102,399,248
Ensembl chr 1:102,396,538...102,399,248
JBrowse link
negative regulation of skeletal muscle tissue regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myoz1 myozenin 1 ISO (MGI:MGI:3831256|PMID:18846255) RGD PMID:18846255 MGI:MGI:3831256 NCBI chr15:4,077,066...4,084,306
Ensembl chr15:4,077,091...4,084,314
JBrowse link
positive regulation of satellite cell activation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Capn3 calpain 3 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5306562|PMID:20139084)
Ensembl
UniProt
RGD
PMID:20139084 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5306562 NCBI chr 3:112,227,486...112,278,408
Ensembl chr 3:112,228,720...112,278,408
JBrowse link
G Sox15 SRY-box transcription factor 15 ISO (MGI:MGI:3714565|PMID:17363903) RGD PMID:17363903 MGI:MGI:3714565 NCBI chr10:56,260,514...56,263,503
Ensembl chr10:56,260,514...56,263,503
JBrowse link
positive regulation of skeletal muscle tissue regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hopx HOP homeobox ISO MGI:MGI:2389244 (MGI:MGI:3708191|PMID:17192267) RGD PMID:17192267 MGI:MGI:3708191 NCBI chr14:33,354,803...33,362,547
Ensembl chr14:33,354,807...33,362,551
JBrowse link
G Mir675 microRNA 675 ISO (MGI:MGI:5566551|PMID:24532688) RGD PMID:24532688 MGI:MGI:5566551 NCBI chr 1:215,745,981...215,746,064
Ensembl chr 1:215,745,981...215,746,064
JBrowse link
G Myod1 myogenic differentiation 1 ISO
ISS
IEA
(MGI:MGI:3692808|PMID:17028574)
GO_REF:0000107
RGD
Ensembl
PMID:17028574, PMID:17028574 GO_REF:0000107, MGI:MGI:3692808, RGD:8554766 NCBI chr 1:102,396,538...102,399,248
Ensembl chr 1:102,396,538...102,399,248
JBrowse link
G Ppard peroxisome proliferator-activated receptor delta ISO (MGI:MGI:5319147|PMID:22040534) RGD PMID:22040534 MGI:MGI:5319147 NCBI chr20:7,818,289...7,883,482
Ensembl chr20:7,818,289...7,885,333
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 IEP RGD PMID:10672325 RGD:1601614 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
JBrowse link
regulation of satellite cell activation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gjd4 gap junction protein, delta 4 ISO MGI:MGI:5009133 (MGI:MGI:5008546|PMID:21272575) RGD PMID:21272575 MGI:MGI:5008546 NCBI chr17:62,297,086...62,299,655
Ensembl chr17:62,297,086...62,299,655
JBrowse link
regulation of skeletal muscle tissue regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G P2rx5 purinergic receptor P2X 5 IMP RGD PMID:12135987 RGD:729229 NCBI chr10:59,725,438...59,737,126
Ensembl chr10:59,725,398...59,737,126
JBrowse link
satellite cell activation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Klf5 Kruppel-like factor 5 ISO MGI:MGI:4353154|MGI:MGI:4421792 (MGI:MGI:5823533|PMID:27743478) RGD PMID:27743478 MGI:MGI:5823533 NCBI chr15:83,703,796...83,722,921
Ensembl chr15:83,703,791...83,722,921
JBrowse link
G Kpna1 karyopherin subunit alpha 1 ISO MGI:MGI:3775202 (MGI:MGI:5823554|PMID:27434733) RGD PMID:27434733 MGI:MGI:5823554 NCBI chr11:67,652,573...67,717,180
Ensembl chr11:67,652,577...67,703,025
JBrowse link
skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO MGI:MGI:2661097|MGI:MGI:3574960 (MGI:MGI:4950630|PMID:21498568) RGD PMID:21498568 MGI:MGI:4950630 NCBI chr 4:77,284,404...77,347,011
Ensembl chr 4:77,284,404...77,347,011
JBrowse link
G Fzd7 frizzled class receptor 7 ISO (MGI:MGI:3849215|PMID:19497282) RGD PMID:19497282 MGI:MGI:3849215 NCBI chr 9:66,305,731...66,308,550
Ensembl chr 9:66,305,731...66,308,550
JBrowse link
G Igf1 insulin-like growth factor 1 ISO
IEA
(PMID:17531227)
GO_REF:0000107
RGD
Ensembl
PMID:17531227 GO_REF:0000107 NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
JBrowse link
G Selenon selenoprotein N ISO (MGI:MGI:4936779|PMID:21131290) RGD PMID:21131290 MGI:MGI:4936779 NCBI chr 5:152,748,497...152,765,489
Ensembl chr 5:152,750,284...152,762,165
JBrowse link
G Wnt7a Wnt family member 7A ISO (MGI:MGI:3849215|PMID:19497282) RGD PMID:19497282 MGI:MGI:3849215 NCBI chr 4:122,994,425...123,040,609
Ensembl chr 4:122,994,425...123,040,609
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    developmental process 6827
      developmental growth 819
        tissue regeneration 96
          skeletal muscle tissue regeneration 51
            myoblast differentiation involved in skeletal muscle regeneration + 4
            myoblast migration involved in skeletal muscle regeneration 4
            myoblast proliferation involved in skeletal muscle regeneration 0
            myotube differentiation involved in skeletal muscle regeneration + 8
            negative regulation of skeletal muscle tissue regeneration + 1
            positive regulation of skeletal muscle tissue regeneration + 7
            regulation of skeletal muscle tissue regeneration + 10
            satellite cell activation involved in skeletal muscle regeneration + 5
            skeletal muscle regeneration at neuromuscular junction 0
            skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration + 5
Path 2
Term Annotations click to browse term
  biological_process 20028
    developmental process 6827
      anatomical structure development 6269
        tissue development 2099
          tissue regeneration 96
            skeletal muscle tissue regeneration 51
              myoblast differentiation involved in skeletal muscle regeneration + 4
              myoblast migration involved in skeletal muscle regeneration 4
              myoblast proliferation involved in skeletal muscle regeneration 0
              myotube differentiation involved in skeletal muscle regeneration + 8
              negative regulation of skeletal muscle tissue regeneration + 1
              positive regulation of skeletal muscle tissue regeneration + 7
              regulation of skeletal muscle tissue regeneration + 10
              satellite cell activation involved in skeletal muscle regeneration + 5
              skeletal muscle regeneration at neuromuscular junction 0
              skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.