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ONTOLOGY REPORT - ANNOTATIONS


Term:skeletal muscle tissue regeneration
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Accession:GO:0043403 term browser browse the term
Definition:The regrowth of skeletal muscle tissue to repair injured or damaged muscle fibers in the postnatal stage.
Synonyms:related_synonym: myofiber turnover


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skeletal muscle tissue regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BIN3 bridging integrator 3 ISO (MGI:5517720|PMID:23872330) MGI PMID:23872330 MGI:5517720 NCBI chr 8:21,870,784...21,919,077
Ensembl chr 8:18,809,582...18,858,912
JBrowse link
G CFLAR CASP8 and FADD like apoptosis regulator ISO (MGI:5707584|PMID:21364645) BHF-UCL PMID:21364645 MGI:5707584 NCBI chr2B:88,373,057...88,429,959
Ensembl chr2B:206,528,943...206,577,045
JBrowse link
G DAG1 dystroglycan 1 ISO RGD PMID:12086334 RGD:11541049 NCBI chr 3:49,396,180...49,464,689
Ensembl chr 3:50,640,615...50,703,852
JBrowse link
G DMD dystrophin ISO RGD PMID:12086334 RGD:11541049 NCBI chr  X:23,728,650...26,338,849
Ensembl chr  X:31,282,415...33,492,733
JBrowse link
G DYSF dysferlin ISO (MGI:3843552|PMID:19286669) MGI PMID:19286669 MGI:3843552 NCBI chr2A:71,495,573...71,730,073
Ensembl chr2A:72,994,888...73,228,846
JBrowse link
G ENO3 enolase 3 ISO RGD PMID:16752196 RGD:2301764 NCBI chr17:4,997,052...5,005,221
Ensembl chr17:4,986,116...4,992,876
JBrowse link
G EYS eyes shut homolog ISO (PMID:21826682) UniProtKB PMID:21826682 NCBI chr 6:61,424,943...62,195,228 JBrowse link
G GJA1 gap junction protein alpha 1 ISO (MGI:3513707|PMID:15601660) MGI PMID:15601660 MGI:3513707 NCBI chr 6:119,213,513...119,227,617 JBrowse link
G GPX1 glutathione peroxidase 1 ISO (MGI:3662804|PMID:16962942) MGI PMID:16962942 MGI:3662804 NCBI chr 3:49,280,038...49,281,455
Ensembl chr 3:50,360,947...50,361,826
JBrowse link
G IFRD1 interferon related developmental regulator 1 ISO (MGI:3041924|PMID:15060170) MGI PMID:15060170 MGI:3041924 NCBI chr 7:104,412,763...104,438,490
Ensembl chr 7:117,115,187...117,141,887
JBrowse link
G KLF5 Kruppel like factor 5 ISO (MGI:5823533|PMID:27743478) MGI PMID:27743478 MGI:5823533 NCBI chr13:54,287,578...54,310,216 JBrowse link
G KPNA1 karyopherin subunit alpha 1 ISO (MGI:5823554|PMID:27434733) MGI PMID:27434733 MGI:5823554 NCBI chr 3:119,513,919...119,604,737
Ensembl chr 3:126,421,700...126,510,325
JBrowse link
G LARGE1 LARGE xylosyl- and glucuronyltransferase 1 ISO (MGI:5547845|PMID:24132234) UniProt PMID:24132234 MGI:5547845 NCBI chr22:14,077,463...14,929,250 JBrowse link
G MSTN myostatin ISO RGD PMID:11206133 RGD:2303599 NCBI chr2B:77,364,927...77,452,426
Ensembl chr2B:195,283,903...195,290,922
JBrowse link
G MTPN myotrophin ISO RGD PMID:12467730 RGD:632798 NCBI chr 7:127,896,148...127,947,122
Ensembl chr 7:140,392,620...140,443,591
JBrowse link
G MYF6 myogenic factor 6 ISO RGD PMID:12707053 RGD:1600530 NCBI chr12:78,226,562...78,229,470
Ensembl chr12:81,338,339...81,340,176
JBrowse link
G MYMK myomaker, myoblast fusion factor ISO (MGI:5608518|PMID:25085416) MGI PMID:25085416 MGI:5608518 NCBI chr 9:104,638,011...104,668,204
Ensembl chr 9:133,248,761...133,259,631
JBrowse link
G MYMX myomixer, myoblast fusion factor ISO (MGI:6153677|PMID:29581287) UniProt PMID:29581287 MGI:6153677 NCBI chr 6:43,812,606...43,814,252
Ensembl chr 6:45,097,114...45,097,368
JBrowse link
G MYOD1 myogenic differentiation 1 ISO (MGI:5706660|PMID:26658965) RGD
MGI
PMID:12063168, PMID:18077604, PMID:26658965 MGI:5706660, RGD:729226, RGD:9686074 NCBI chr11:17,772,317...17,774,884
Ensembl chr11:17,456,124...17,458,690
JBrowse link
G MYOG myogenin ISO RGD PMID:10867795 RGD:9686125 NCBI chr 1:178,684,933...178,687,971
Ensembl chr 1:182,979,700...182,982,611
JBrowse link
G NACA nascent polypeptide associated complex subunit alpha ISO (MGI:4867362|PMID:21071677) BHF-UCL PMID:21071677 MGI:4867362 NCBI chr12:32,180,823...32,195,645
Ensembl chr12:32,434,366...32,447,510
JBrowse link
G PAX7 paired box 7 ISO (MGI:1206147|PMID:9608680) MGI PMID:9608680 MGI:1206147 NCBI chr 1:17,589,513...17,707,442
Ensembl chr 1:18,639,641...18,756,952
JBrowse link
G PKM pyruvate kinase M1/2 ISO RGD PMID:145474 RGD:2303143 NCBI chr15:51,149,584...51,182,193 JBrowse link
G PLAU plasminogen activator, urokinase ISO RGD PMID:12919869 RGD:1581928 NCBI chr10:70,433,340...70,441,569
Ensembl chr10:73,105,895...73,113,136
JBrowse link
G SELENON selenoprotein N ISO (MGI:4936779|PMID:21131290) MGI PMID:21131290 MGI:4936779 NCBI chr 1:25,058,907...25,076,817
Ensembl chr 1:26,127,125...26,141,745
JBrowse link
G SGCA sarcoglycan alpha ISO RGD PMID:12086334 RGD:11541049 NCBI chr17:44,255,807...44,266,182
Ensembl chr17:49,130,332...49,141,188
JBrowse link
G SOX15 SRY-box transcription factor 15 ISO (MGI:3055629|PMID:15367664) MGI PMID:15367664 MGI:3055629 NCBI chr17:7,619,804...7,621,791
Ensembl chr17:7,606,086...7,608,632
JBrowse link
G TARBP2 TARBP2 subunit of RISC loading complex ISO (MGI:6094668|PMID:27159388) MGI PMID:27159388 MGI:6094668 NCBI chr12:35,246,937...35,253,378
Ensembl chr12:36,031,818...36,038,008
JBrowse link
G VIM vimentin ISO RGD PMID:18941770 RGD:6480441 NCBI chr10:17,546,389...17,554,702
Ensembl chr10:17,818,285...17,826,642
JBrowse link
G WNT10B Wnt family member 10B ISO (MGI:3581945|PMID:15673614) MGI PMID:15673614 MGI:3581945 NCBI chr12:39,771,163...39,785,411
Ensembl chr12:40,659,106...40,665,734
JBrowse link
myoblast differentiation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DICER1 dicer 1, ribonuclease III ISO (MGI:5312165|PMID:22358842) MGI PMID:22358842 MGI:5312165 NCBI chr14:75,709,029...75,780,779
Ensembl chr14:95,036,385...95,107,940
JBrowse link
G MAPK14 mitogen-activated protein kinase 14 ISO (MGI:4838005|PMID:20610565) MGI PMID:20610565 MGI:4838005 NCBI chr 6:35,586,847...35,683,041
Ensembl chr 6:36,788,233...36,871,114
JBrowse link
G WNT10B Wnt family member 10B ISO (MGI:3581945|PMID:15673614) MGI PMID:15673614 MGI:3581945 NCBI chr12:39,771,163...39,785,411
Ensembl chr12:40,659,106...40,665,734
JBrowse link
myoblast fusion involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD81 CD81 molecule ISO (MGI:6282938|PMID:23575678) UniProt PMID:23575678 MGI:6282938 NCBI chr11:2,400,503...2,421,132
Ensembl chr11:2,437,991...2,449,308
JBrowse link
G CD9 CD9 molecule ISO (MGI:6282938|PMID:23575678) UniProt PMID:23575678 MGI:6282938 NCBI chr12:6,327,783...6,366,083
Ensembl chr12:6,245,348...6,283,385
JBrowse link
G MYMK myomaker, myoblast fusion factor ISO (MGI:5608518|PMID:25085416) MGI PMID:25085416 MGI:5608518 NCBI chr 9:104,638,011...104,668,204
Ensembl chr 9:133,248,761...133,259,631
JBrowse link
G MYMX myomixer, myoblast fusion factor ISO (MGI:6153677|PMID:29581287) UniProt PMID:29581287 MGI:6153677 NCBI chr 6:43,812,606...43,814,252
Ensembl chr 6:45,097,114...45,097,368
JBrowse link
G PTGFRN prostaglandin F2 receptor inhibitor ISO (MGI:6282938|PMID:23575678) UniProt PMID:23575678 MGI:6282938 NCBI chr 1:85,530,198...85,610,720
Ensembl chr 1:120,524,859...120,608,105
JBrowse link
myoblast migration involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKIRIN1 akirin 1 ISO (MGI:3850794|PMID:19406121) UniProt PMID:19406121 MGI:3850794 NCBI chr 1:38,269,096...38,283,920
Ensembl chr 1:39,616,036...39,629,300
JBrowse link
G ANXA1 annexin A1 ISO (MGI:5619736|PMID:23144744) CACAO PMID:23144744 MGI:5619736 NCBI chr 9:51,647,404...51,665,990
Ensembl chr 9:71,929,728...71,948,779
JBrowse link
G BIN3 bridging integrator 3 ISO (MGI:5517720|PMID:23872330) MGI PMID:23872330 MGI:5517720 NCBI chr 8:21,870,784...21,919,077
Ensembl chr 8:18,809,582...18,858,912
JBrowse link
G MSTN myostatin ISO (MGI:3850794|PMID:19406121) UniProt PMID:19406121 MGI:3850794 NCBI chr2B:77,364,927...77,452,426
Ensembl chr2B:195,283,903...195,290,922
JBrowse link
myotube differentiation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL9 BCL9 transcription coactivator ISO (MGI:4368064|PMID:19699733) MGI PMID:19699733 MGI:4368064 NCBI chr 1:122,982,604...123,067,299
Ensembl chr 1:112,463,904...112,478,264
JBrowse link
G KLF5 Kruppel like factor 5 ISO (MGI:5823533|PMID:27743478) MGI PMID:27743478 MGI:5823533 NCBI chr13:54,287,578...54,310,216 JBrowse link
G MYOD1 myogenic differentiation 1 ISO (MGI:48687|PMID:1348494) MGI PMID:1348494 MGI:48687 NCBI chr11:17,772,317...17,774,884
Ensembl chr11:17,456,124...17,458,690
JBrowse link
negative regulation of skeletal muscle tissue regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MYOZ1 myozenin 1 ISO (MGI:3831256|PMID:18846255) BHF-UCL PMID:18846255 MGI:3831256 NCBI chr10:70,179,020...70,194,885
Ensembl chr10:72,635,720...72,645,602
JBrowse link
positive regulation of satellite cell activation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100984344 calpain-3 ISO (MGI:5306562|PMID:20139084) UniProt PMID:20139084 MGI:5306562 NCBI chr15:21,227,371...21,372,406
Ensembl chr15:39,476,302...39,528,820
JBrowse link
G SOX15 SRY-box transcription factor 15 ISO (MGI:3714565|PMID:17363903) BHF-UCL PMID:17363903 MGI:3714565 NCBI chr17:7,619,804...7,621,791
Ensembl chr17:7,606,086...7,608,632
JBrowse link
positive regulation of skeletal muscle tissue regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOPX HOP homeobox ISO (MGI:3708191|PMID:17192267) MGI PMID:17192267 MGI:3708191 NCBI chr 4:67,240,801...67,274,419
Ensembl chr 4:73,833,886...73,843,060
JBrowse link
G MYOD1 myogenic differentiation 1 ISO (MGI:3692808|PMID:17028574) MGI PMID:17028574 MGI:3692808 NCBI chr11:17,772,317...17,774,884
Ensembl chr11:17,456,124...17,458,690
JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 ISO RGD PMID:10672325 RGD:1601614 NCBI chr 3:30,536,187...30,623,653
Ensembl chr 3:30,854,460...30,938,856
JBrowse link
regulation of satellite cell activation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GJD4 gap junction protein delta 4 ISO (MGI:5008546|PMID:21272575) MGI PMID:21272575 MGI:5008546 NCBI chr10:35,698,294...35,735,764
Ensembl chr10:36,306,919...36,322,448
JBrowse link
regulation of skeletal muscle tissue regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G P2RX5 purinergic receptor P2X 5 ISO RGD PMID:12135987 RGD:729229 NCBI chr17:3,722,117...3,745,833 JBrowse link
G SPAAR small regulatory polypeptide of amino acid response ISO (MGI:5822922|PMID:28024296) UniProt PMID:28024296 MGI:5822922 NCBI chr 9:35,760,064...35,762,224
Ensembl chr 9:36,563,148...36,563,420
JBrowse link
satellite cell activation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KLF5 Kruppel like factor 5 ISO (MGI:5823533|PMID:27743478) MGI PMID:27743478 MGI:5823533 NCBI chr13:54,287,578...54,310,216 JBrowse link
G KPNA1 karyopherin subunit alpha 1 ISO (MGI:5823554|PMID:27434733) MGI PMID:27434733 MGI:5823554 NCBI chr 3:119,513,919...119,604,737
Ensembl chr 3:126,421,700...126,510,325
JBrowse link
skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO (MGI:4950630|PMID:21498568) MGI PMID:21498568 MGI:4950630 NCBI chr 7:140,536,962...140,613,104
Ensembl chr 7:153,017,590...153,059,726
JBrowse link
G FZD7 frizzled class receptor 7 ISO (MGI:3849215|PMID:19497282) MGI PMID:19497282 MGI:3849215 NCBI chr2B:89,290,929...89,294,873
Ensembl chr2B:207,439,942...207,446,283
JBrowse link
G IGF1 insulin like growth factor 1 ISO (PMID:17531227) BHF-UCL PMID:17531227 NCBI chr12:99,986,887...100,066,773 JBrowse link
G SELENON selenoprotein N ISO (MGI:4936779|PMID:21131290) UniProt PMID:21131290 MGI:4936779 NCBI chr 1:25,058,907...25,076,817
Ensembl chr 1:26,127,125...26,141,745
JBrowse link
G WNT7A Wnt family member 7A ISO (MGI:3849215|PMID:19497282) MGI PMID:19497282 MGI:3849215 NCBI chr 3:13,733,487...13,797,189
Ensembl chr 3:14,077,839...14,138,386
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12566
    developmental process 5839
      developmental growth 761
        tissue regeneration 88
          skeletal muscle tissue regeneration 49
            myoblast differentiation involved in skeletal muscle regeneration + 3
            myoblast migration involved in skeletal muscle regeneration 4
            myoblast proliferation involved in skeletal muscle regeneration 0
            myotube differentiation involved in skeletal muscle regeneration + 8
            negative regulation of skeletal muscle tissue regeneration + 1
            positive regulation of skeletal muscle tissue regeneration + 5
            regulation of skeletal muscle tissue regeneration + 9
            satellite cell activation involved in skeletal muscle regeneration + 5
            skeletal muscle regeneration at neuromuscular junction 0
            skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration + 5
Path 2
Term Annotations click to browse term
  biological_process 12566
    developmental process 5839
      anatomical structure development 5452
        tissue development 1920
          tissue regeneration 88
            skeletal muscle tissue regeneration 49
              myoblast differentiation involved in skeletal muscle regeneration + 3
              myoblast migration involved in skeletal muscle regeneration 4
              myoblast proliferation involved in skeletal muscle regeneration 0
              myotube differentiation involved in skeletal muscle regeneration + 8
              negative regulation of skeletal muscle tissue regeneration + 1
              positive regulation of skeletal muscle tissue regeneration + 5
              regulation of skeletal muscle tissue regeneration + 9
              satellite cell activation involved in skeletal muscle regeneration + 5
              skeletal muscle regeneration at neuromuscular junction 0
              skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.