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ONTOLOGY REPORT - ANNOTATIONS


Term:skeletal muscle tissue regeneration
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Accession:GO:0043403 term browser browse the term
Definition:The regrowth of skeletal muscle tissue to repair injured or damaged muscle fibers in the postnatal stage.
Synonyms:related_synonym: myofiber turnover


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skeletal muscle tissue regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BIN3 bridging integrator 3 ISO (MGI:5517720|PMID:23872330) MGI PMID:23872330 MGI:5517720 NCBI chr 8:22,620,418...22,669,148
Ensembl chr 8:22,620,418...22,669,148
JBrowse link
G CFLAR CASP8 and FADD like apoptosis regulator ISS BHF-UCL GO_REF:0000024 NCBI chr 2:201,116,164...201,176,687
Ensembl chr 2:201,116,154...201,176,687
JBrowse link
G DAG1 dystroglycan 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:49,468,703...49,535,618
Ensembl chr 3:49,468,703...49,535,618
JBrowse link
G DMD dystrophin IEA Ensembl GO_REF:0000107 NCBI chr  X:31,119,219...33,339,460
Ensembl chr  X:31,097,677...33,339,441
JBrowse link
G DYSF dysferlin IEA Ensembl GO_REF:0000107 NCBI chr 2:71,453,154...71,686,763
Ensembl chr 2:71,453,722...71,686,768
JBrowse link
G ENO3 enolase 3 IEA Ensembl GO_REF:0000107 NCBI chr17:4,949,182...4,957,131
Ensembl chr17:4,948,092...4,957,131
JBrowse link
G EYS eyes shut homolog IMP (PMID:21826682) UniProtKB PMID:21826682 NCBI chr 6:63,719,980...65,707,226
Ensembl chr 6:63,719,980...65,707,226
JBrowse link
G GJA1 gap junction protein alpha 1 ISO (MGI:3513707|PMID:15601660) MGI PMID:15601660 MGI:3513707 NCBI chr 6:121,435,646...121,449,727
Ensembl chr 6:121,435,595...121,449,727
JBrowse link
G GPX1 glutathione peroxidase 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:49,357,176...49,358,353
Ensembl chr 3:49,357,176...49,358,358
JBrowse link
G IFRD1 interferon related developmental regulator 1 ISO (MGI:3041924|PMID:15060170) MGI PMID:15060170 MGI:3041924 NCBI chr 7:112,423,174...112,477,203
Ensembl chr 7:112,422,887...112,481,017
Ensembl chr 7:112,422,887...112,481,017
JBrowse link
G KLF5 Kruppel like factor 5 ISO (MGI:5823533|PMID:27743478) MGI PMID:27743478 MGI:5823533 NCBI chr13:73,054,976...73,077,538
Ensembl chr13:73,054,976...73,077,541
JBrowse link
G KPNA1 karyopherin subunit alpha 1 ISO (MGI:5823554|PMID:27434733) MGI PMID:27434733 MGI:5823554 NCBI chr 3:122,421,902...122,514,939
Ensembl chr 3:122,421,902...122,514,945
JBrowse link
G LARGE1 LARGE xylosyl- and glucuronyltransferase 1 ISS UniProtKB GO_REF:0000024 NCBI chr22:33,162,237...33,922,824
Ensembl chr22:33,162,226...33,922,841
JBrowse link
G MSTN myostatin ISO RGD PMID:11206133 RGD:2303599 NCBI chr 2:190,055,700...190,062,729
Ensembl chr 2:190,055,700...190,062,729
JBrowse link
G MTPN myotrophin IEA Ensembl GO_REF:0000107 NCBI chr 7:135,926,760...135,977,359
Ensembl chr 7:135,926,760...135,977,359
JBrowse link
G MYF6 myogenic factor 6 IEA Ensembl GO_REF:0000107 NCBI chr12:80,707,634...80,709,474
Ensembl chr12:80,707,634...80,709,474
JBrowse link
G MYMK myomaker, myoblast fusion factor ISO (MGI:5608518|PMID:25085416) MGI PMID:25085416 MGI:5608518 NCBI chr 9:133,514,586...133,524,959
Ensembl chr 9:133,514,586...133,528,612
JBrowse link
G MYMX myomixer, myoblast fusion factor ISS UniProt GO_REF:0000024 NCBI chr 6:44,192,365...44,218,236
Ensembl chr 6:44,216,926...44,218,234
JBrowse link
G MYOD1 myogenic differentiation 1 ISO (MGI:5706660|PMID:26658965) RGD
MGI
PMID:12063168, PMID:18077604, PMID:26658965 MGI:5706660, RGD:729226, RGD:9686074 NCBI chr11:17,719,571...17,722,136
Ensembl chr11:17,719,571...17,722,136
JBrowse link
G MYOG myogenin IEA Ensembl GO_REF:0000107 NCBI chr 1:203,083,129...203,086,012
Ensembl chr 1:203,083,129...203,086,012
JBrowse link
G NACA nascent polypeptide associated complex subunit alpha ISS BHF-UCL GO_REF:0000024 NCBI chr12:56,712,427...56,725,299
Ensembl chr12:56,712,427...56,731,628
Ensembl chr12:56,712,427...56,731,628
JBrowse link
G PAX7 paired box 7 IEA Ensembl GO_REF:0000107 NCBI chr 1:18,630,846...18,748,866
Ensembl chr 1:18,630,846...18,748,866
JBrowse link
G PKM pyruvate kinase M1/2 IEA Ensembl GO_REF:0000107 NCBI chr15:72,199,029...72,231,389
Ensembl chr15:72,199,029...72,231,822
JBrowse link
G PLAU plasminogen activator, urokinase ISO RGD PMID:12919869 RGD:1581928 NCBI chr10:73,909,182...73,917,497
Ensembl chr10:73,909,177...73,917,496
JBrowse link
G PLAUR plasminogen activator, urokinase receptor ISO RGD PMID:12919869 RGD:1581928 NCBI chr19:43,646,095...43,670,197
Ensembl chr19:43,646,095...43,670,547
JBrowse link
G PPP3CA protein phosphatase 3 catalytic subunit alpha TAS (PMID:18846255) BHF-UCL PMID:18846255 NCBI chr 4:101,023,418...101,348,295
Ensembl chr 4:101,023,409...101,348,278
JBrowse link
G SELENON selenoprotein N ISO (MGI:4936779|PMID:21131290) MGI PMID:21131290 MGI:4936779 NCBI chr 1:25,800,193...25,818,221
Ensembl chr 1:25,800,176...25,818,221
JBrowse link
G SGCA sarcoglycan alpha IEA Ensembl GO_REF:0000107 NCBI chr17:50,165,517...50,175,928
Ensembl chr17:50,164,214...50,175,928
JBrowse link
G SOX15 SRY-box transcription factor 15 IEA Ensembl GO_REF:0000107 NCBI chr17:7,588,178...7,590,094
Ensembl chr17:7,588,178...7,590,094
JBrowse link
G TARBP2 TARBP2 subunit of RISC loading complex IEA Ensembl GO_REF:0000107 NCBI chr12:53,500,923...53,506,431
Ensembl chr12:53,500,921...53,506,431
JBrowse link
G VIM vimentin ISO RGD PMID:18941770 RGD:6480441 NCBI chr10:17,228,241...17,237,593
Ensembl chr10:17,228,241...17,237,593
JBrowse link
G WNT10B Wnt family member 10B ISO (MGI:3581945|PMID:15673614) MGI PMID:15673614 MGI:3581945 NCBI chr12:48,965,340...48,979,587
Ensembl chr12:48,965,340...48,971,735
JBrowse link
myoblast differentiation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DICER1 dicer 1, ribonuclease III ISO (MGI:5312165|PMID:22358842) MGI PMID:22358842 MGI:5312165 NCBI chr14:95,086,228...95,158,263
Ensembl chr14:95,086,228...95,158,010
JBrowse link
G MAPK14 mitogen-activated protein kinase 14 ISO (MGI:4838005|PMID:20610565) MGI PMID:20610565 MGI:4838005 NCBI chr 6:36,027,711...36,122,964
Ensembl chr 6:36,027,677...36,111,236
JBrowse link
G MIR489 microRNA 489 ISO (MGI:5312165|PMID:22358842) MGI PMID:22358842 MGI:5312165 NCBI chr 7:93,483,936...93,484,019
Ensembl chr 7:93,483,936...93,484,019
JBrowse link
G WNT10B Wnt family member 10B IEA Ensembl GO_REF:0000107 NCBI chr12:48,965,340...48,979,587
Ensembl chr12:48,965,340...48,971,735
JBrowse link
myoblast fusion involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD81 CD81 molecule ISS UniProt GO_REF:0000024 NCBI chr11:2,376,180...2,397,402
Ensembl chr11:2,376,177...2,397,419
Ensembl chr11:2,376,177...2,397,419
JBrowse link
G CD9 CD9 molecule ISS UniProt GO_REF:0000024 NCBI chr12:6,199,946...6,238,266
Ensembl chr12:6,199,715...6,238,271
JBrowse link
G ERVFRD-1 endogenous retrovirus group FRD member 1, envelope ISO (MGI:5800348|PMID:27589388) MGI PMID:27589388 MGI:5800348 NCBI chr 6:11,102,489...11,111,725
Ensembl chr 6:11,102,489...11,111,725
JBrowse link
G MYMK myomaker, myoblast fusion factor IEA Ensembl GO_REF:0000107 NCBI chr 9:133,514,586...133,524,959
Ensembl chr 9:133,514,586...133,528,612
JBrowse link
G MYMX myomixer, myoblast fusion factor ISS UniProt GO_REF:0000024 NCBI chr 6:44,192,365...44,218,236
Ensembl chr 6:44,216,926...44,218,234
JBrowse link
G PTGFRN prostaglandin F2 receptor inhibitor ISS UniProt GO_REF:0000024 NCBI chr 1:116,909,916...116,990,358
Ensembl chr 1:116,909,916...116,990,353
JBrowse link
myoblast migration involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKIRIN1 akirin 1 ISS UniProt GO_REF:0000024 NCBI chr 1:38,991,276...39,006,059
Ensembl chr 1:38,991,276...39,006,059
JBrowse link
G ANXA1 annexin A1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:73,151,865...73,170,393
Ensembl chr 9:73,151,865...73,170,393
JBrowse link
G BIN3 bridging integrator 3 IEA Ensembl GO_REF:0000107 NCBI chr 8:22,620,418...22,669,148
Ensembl chr 8:22,620,418...22,669,148
JBrowse link
G MSTN myostatin ISS UniProt GO_REF:0000024 NCBI chr 2:190,055,700...190,062,729
Ensembl chr 2:190,055,700...190,062,729
JBrowse link
myotube differentiation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL9 BCL9 transcription coactivator IEA Ensembl GO_REF:0000107 NCBI chr 1:147,541,501...147,626,217
Ensembl chr 1:147,541,501...147,626,216
JBrowse link
G KLF5 Kruppel like factor 5 ISO (MGI:5823533|PMID:27743478) MGI PMID:27743478 MGI:5823533 NCBI chr13:73,054,976...73,077,538
Ensembl chr13:73,054,976...73,077,541
JBrowse link
G MYOD1 myogenic differentiation 1 IEA Ensembl GO_REF:0000107 NCBI chr11:17,719,571...17,722,136
Ensembl chr11:17,719,571...17,722,136
JBrowse link
negative regulation of skeletal muscle tissue regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MYOZ1 myozenin 1 ISS (PMID:18846255) BHF-UCL PMID:18846255 NCBI chr10:73,631,612...73,641,474
Ensembl chr10:73,631,612...73,641,474
JBrowse link
positive regulation of satellite cell activation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAPN3 calpain 3 ISS UniProtKB GO_REF:0000024 NCBI chr15:42,359,501...42,412,317
Ensembl chr15:42,359,498...42,412,949
Ensembl chr15:42,359,498...42,412,949
JBrowse link
G SOX15 SRY-box transcription factor 15 ISS (PMID:17363903) BHF-UCL PMID:17363903 NCBI chr17:7,588,178...7,590,094
Ensembl chr17:7,588,178...7,590,094
JBrowse link
positive regulation of skeletal muscle tissue regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOPX HOP homeobox ISO (MGI:3708191|PMID:17192267) MGI PMID:17192267 MGI:3708191 NCBI chr 4:56,647,992...56,681,866
Ensembl chr 4:56,647,988...56,681,899
JBrowse link
G MIR675 microRNA 675 ISO (MGI:5566551|PMID:24532688) MGI PMID:24532688 MGI:5566551 NCBI chr11:1,996,759...1,996,831
Ensembl chr11:1,996,759...1,996,831
JBrowse link
G MYOD1 myogenic differentiation 1 IEA Ensembl GO_REF:0000107 NCBI chr11:17,719,571...17,722,136
Ensembl chr11:17,719,571...17,722,136
JBrowse link
G PPARD peroxisome proliferator activated receptor delta IEA Ensembl GO_REF:0000107 NCBI chr 6:35,342,558...35,428,180
Ensembl chr 6:35,342,558...35,428,191
JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 IEA Ensembl GO_REF:0000107 NCBI chr 3:30,606,472...30,694,142
Ensembl chr 3:30,606,601...30,694,142
Ensembl chr 3:30,606,601...30,694,142
JBrowse link
regulation of satellite cell activation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GJD4 gap junction protein delta 4 IEA Ensembl GO_REF:0000107 NCBI chr10:35,605,341...35,608,935
Ensembl chr10:35,605,341...35,608,935
JBrowse link
regulation of skeletal muscle tissue regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G P2RX5 purinergic receptor P2X 5 ISO RGD PMID:12135987 RGD:729229 NCBI chr17:3,673,227...3,696,155
Ensembl chr17:3,672,199...3,696,240
JBrowse link
G SPAAR small regulatory polypeptide of amino acid response ISS UniProtKB GO_REF:0000024 NCBI chr 9:35,909,490...35,911,686
Ensembl chr 9:35,909,490...35,937,153
JBrowse link
satellite cell activation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KLF5 Kruppel like factor 5 ISO (MGI:5823533|PMID:27743478) MGI PMID:27743478 MGI:5823533 NCBI chr13:73,054,976...73,077,538
Ensembl chr13:73,054,976...73,077,541
JBrowse link
G KPNA1 karyopherin subunit alpha 1 ISO (MGI:5823554|PMID:27434733) MGI PMID:27434733 MGI:5823554 NCBI chr 3:122,421,902...122,514,939
Ensembl chr 3:122,421,902...122,514,945
JBrowse link
skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit IEA Ensembl GO_REF:0000107 NCBI chr 7:148,807,374...148,884,344
Ensembl chr 7:148,807,383...148,884,321
JBrowse link
G FZD7 frizzled class receptor 7 IEA Ensembl GO_REF:0000107 NCBI chr 2:202,033,855...202,038,441
Ensembl chr 2:202,034,587...202,038,445
JBrowse link
G IGF1 insulin like growth factor 1 IDA (PMID:17531227) BHF-UCL PMID:17531227 NCBI chr12:102,395,860...102,481,839
Ensembl chr12:102,395,874...102,481,744
JBrowse link
G SELENON selenoprotein N ISO (MGI:4936779|PMID:21131290) UniProt PMID:21131290 MGI:4936779 NCBI chr 1:25,800,193...25,818,221
Ensembl chr 1:25,800,176...25,818,221
JBrowse link
G WNT7A Wnt family member 7A IEA Ensembl GO_REF:0000107 NCBI chr 3:13,816,258...13,880,071
Ensembl chr 3:13,816,258...13,880,071
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18672
    developmental process 7466
      developmental growth 835
        tissue regeneration 100
          skeletal muscle tissue regeneration 55
            myoblast differentiation involved in skeletal muscle regeneration + 4
            myoblast migration involved in skeletal muscle regeneration 4
            myoblast proliferation involved in skeletal muscle regeneration 0
            myotube differentiation involved in skeletal muscle regeneration + 9
            negative regulation of skeletal muscle tissue regeneration + 1
            positive regulation of skeletal muscle tissue regeneration + 7
            regulation of skeletal muscle tissue regeneration + 11
            satellite cell activation involved in skeletal muscle regeneration + 5
            skeletal muscle regeneration at neuromuscular junction 0
            skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration + 5
Path 2
Term Annotations click to browse term
  biological_process 18672
    developmental process 7466
      anatomical structure development 6873
        tissue development 2422
          tissue regeneration 100
            skeletal muscle tissue regeneration 55
              myoblast differentiation involved in skeletal muscle regeneration + 4
              myoblast migration involved in skeletal muscle regeneration 4
              myoblast proliferation involved in skeletal muscle regeneration 0
              myotube differentiation involved in skeletal muscle regeneration + 9
              negative regulation of skeletal muscle tissue regeneration + 1
              positive regulation of skeletal muscle tissue regeneration + 7
              regulation of skeletal muscle tissue regeneration + 11
              satellite cell activation involved in skeletal muscle regeneration + 5
              skeletal muscle regeneration at neuromuscular junction 0
              skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.