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ONTOLOGY REPORT - ANNOTATIONS


Term:skeletal muscle tissue regeneration
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Accession:GO:0043403 term browser browse the term
Definition:The regrowth of skeletal muscle tissue to repair injured or damaged muscle fibers in the postnatal stage.
Synonyms:related_synonym: myofiber turnover


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skeletal muscle tissue regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bin3 bridging integrator 3 IMP (MGI:5517720|PMID:23872330) MGI PMID:23872330 MGI:5517720 NCBI chr14:70,100,089...70,137,964
Ensembl chr14:70,100,105...70,138,206
JBrowse link
G Cflar CASP8 and FADD-like apoptosis regulator IMP (MGI:5707584|PMID:21364645) BHF-UCL PMID:21364645 MGI:5707584 NCBI chr 1:58,711,311...58,758,884
Ensembl chr 1:58,711,508...58,758,884
JBrowse link
G Dag1 dystroglycan 1 ISO RGD PMID:12086334 RGD:11541049 NCBI chr 9:108,204,861...108,263,977
Ensembl chr 9:108,204,634...108,263,958
JBrowse link
G Dmd dystrophin, muscular dystrophy ISO RGD PMID:12086334 RGD:11541049 NCBI chr  X:82,814,664...85,205,050
Ensembl chr  X:82,948,870...85,206,141
JBrowse link
G Dysf dysferlin IMP (MGI:3843552|PMID:19286669) MGI PMID:19286669 MGI:3843552 NCBI chr 6:84,008,361...84,211,060
Ensembl chr 6:84,008,590...84,211,060
JBrowse link
G Eno3 enolase 3, beta muscle ISO RGD PMID:16752196 RGD:2301764 NCBI chr11:70,653,125...70,662,513
Ensembl chr11:70,657,202...70,662,513
JBrowse link
G Gja1 gap junction protein, alpha 1 IDA (MGI:3513707|PMID:15601660) MGI PMID:15601660 MGI:3513707 NCBI chr10:56,377,300...56,390,419
Ensembl chr10:56,377,330...56,402,513
JBrowse link
G Gm34220 predicted gene, 34220 IC
IMP
IDA
(MGI:5706660|PMID:26658965) GOC
MGI
PMID:26658965 MGI:5706660 NCBI chr12:108,790,031...108,793,414
Ensembl chr12:108,790,035...108,792,743
JBrowse link
G Gpx1 glutathione peroxidase 1 IMP (MGI:3662804|PMID:16962942) MGI PMID:16962942 MGI:3662804 NCBI chr 9:108,339,080...108,340,342
Ensembl chr 9:108,338,903...108,340,343
JBrowse link
G Ifrd1 interferon-related developmental regulator 1 IMP (MGI:3041924|PMID:15060170) MGI PMID:15060170 MGI:3041924 NCBI chr12:40,203,129...40,223,189
Ensembl chr12:40,201,567...40,248,504
JBrowse link
G Klf5 Kruppel-like factor 5 IMP (MGI:5823533|PMID:27743478) MGI PMID:27743478 MGI:5823533 NCBI chr14:99,298,691...99,313,412
Ensembl chr14:99,298,691...99,315,036
JBrowse link
G Kpna1 karyopherin (importin) alpha 1 IMP (MGI:5823554|PMID:27434733) MGI PMID:27434733 MGI:5823554 NCBI chr16:35,983,288...36,037,136
Ensembl chr16:35,978,750...36,037,131
JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 IDA (MGI:5547845|PMID:24132234) UniProt PMID:24132234 MGI:5547845 NCBI chr 8:72,814,598...73,353,721
Ensembl chr 8:72,814,599...73,353,540
JBrowse link
G Mstn myostatin ISO RGD PMID:11206133 RGD:2303599 NCBI chr 1:53,061,640...53,068,079
Ensembl chr 1:53,061,640...53,068,079
JBrowse link
G Mtpn myotrophin ISO RGD PMID:12467730 RGD:632798 NCBI chr 6:35,508,824...35,539,888
Ensembl chr 6:35,508,906...35,539,888
JBrowse link
G Myf6 myogenic factor 6 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr10:107,492,848...107,494,723
Ensembl chr10:107,492,853...107,494,737
JBrowse link
G Mymk myomaker, myoblast fusion factor IMP (MGI:5608518|PMID:25085416) MGI PMID:25085416 MGI:5608518 NCBI chr 2:27,061,636...27,072,161
Ensembl chr 2:27,061,636...27,072,179
JBrowse link
G Mymx myomixer, myoblast fusion factor IMP (MGI:6153677|PMID:29581287) UniProt PMID:29581287 MGI:6153677 NCBI chr17:45,600,961...45,602,196
Ensembl chr17:45,600,971...45,602,102
JBrowse link
G Myod1 myogenic differentiation 1 IMP
IDA
ISO
(MGI:5706660|PMID:26658965) MGI PMID:26658965 GO_REF:0000096, MGI:4417868, MGI:5706660 NCBI chr 7:46,376,474...46,379,092
Ensembl chr 7:46,376,474...46,379,099
JBrowse link
G Myog myogenin ISO RGD PMID:10867795 RGD:9686125 NCBI chr 1:134,290,004...134,292,548
Ensembl chr 1:134,289,989...134,292,548
JBrowse link
G Naca nascent polypeptide-associated complex alpha polypeptide IMP (MGI:4867362|PMID:21071677) BHF-UCL PMID:21071677 MGI:4867362 NCBI chr10:128,035,346...128,048,637
Ensembl chr10:128,035,575...128,048,637
JBrowse link
G Pax7 paired box 7 IMP (MGI:1206147|PMID:9608680) MGI PMID:9608680 MGI:1206147 NCBI chr 4:139,737,059...139,833,530
Ensembl chr 4:139,737,062...139,833,528
JBrowse link
G Pkm pyruvate kinase, muscle ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 9:59,656,576...59,679,372
Ensembl chr 9:59,656,368...59,679,375
JBrowse link
G Plau plasminogen activator, urokinase ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr14:20,836,662...20,843,388
Ensembl chr14:20,836,660...20,843,385
JBrowse link
G Plaur plasminogen activator, urokinase receptor ISO RGD PMID:12919869 RGD:1581928 NCBI chr 7:24,460,937...24,475,970
Ensembl chr 7:24,462,484...24,475,968
JBrowse link
G Selenon selenoprotein N IMP (MGI:4936779|PMID:21131290) MGI PMID:21131290 MGI:4936779 NCBI chr 4:134,537,892...134,552,166
Ensembl chr 4:134,537,892...134,552,166
JBrowse link
G Sgca sarcoglycan, alpha (dystrophin-associated glycoprotein) ISO RGD PMID:12086334 RGD:11541049 NCBI chr11:94,962,777...94,976,327
Ensembl chr11:94,962,791...94,976,327
JBrowse link
G Sox15 SRY (sex determining region Y)-box 15 IMP (MGI:3055629|PMID:15367664) MGI PMID:15367664 MGI:3055629 NCBI chr11:69,655,037...69,656,727
Ensembl chr11:69,655,314...69,656,727
JBrowse link
G Tarbp2 TARBP2, RISC loading complex RNA binding subunit IMP (MGI:6094668|PMID:27159388) MGI PMID:27159388 MGI:6094668 NCBI chr15:102,516,077...102,523,676
Ensembl chr15:102,518,192...102,523,676
JBrowse link
G Vim vimentin ISO RGD PMID:18941770 RGD:6480441 NCBI chr 2:13,574,311...13,582,826
Ensembl chr 2:13,573,927...13,582,826
JBrowse link
G Vmn2r17 vomeronasal 2, receptor 17 ISO (PMID:21826682) UniProtKB PMID:21826682 NCBI chr 5:109,420,013...109,453,387
Ensembl chr 5:109,419,688...109,458,459
JBrowse link
G Wnt10b wingless-type MMTV integration site family, member 10B IMP (MGI:3581945|PMID:15673614) MGI PMID:15673614 MGI:3581945 NCBI chr15:98,770,712...98,778,206
Ensembl chr15:98,770,712...98,778,150
JBrowse link
myoblast differentiation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1, ribonuclease type III IMP (MGI:5312165|PMID:22358842) MGI PMID:22358842 MGI:5312165 NCBI chr12:104,687,740...104,751,968
Ensembl chr12:104,687,742...104,751,952
JBrowse link
G Mapk14 mitogen-activated protein kinase 14 IMP (MGI:4838005|PMID:20610565) MGI PMID:20610565 MGI:4838005 NCBI chr17:28,691,342...28,748,405
Ensembl chr17:28,691,329...28,748,406
JBrowse link
G Mir489 microRNA 489 IDA (MGI:5312165|PMID:22358842) MGI PMID:22358842 MGI:5312165 NCBI chr 6:3,721,897...3,722,003
Ensembl chr 6:3,721,897...3,722,003
JBrowse link
G Wnt10b wingless-type MMTV integration site family, member 10B IMP (MGI:3581945|PMID:15673614) MGI PMID:15673614 MGI:3581945 NCBI chr15:98,770,712...98,778,206
Ensembl chr15:98,770,712...98,778,150
JBrowse link
myoblast fusion involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd81 CD81 antigen IMP (MGI:6282938|PMID:23575678) UniProt PMID:23575678 MGI:6282938 NCBI chr 7:143,052,750...143,067,930
Ensembl chr 7:143,052,739...143,067,934
JBrowse link
G Cd9 CD9 antigen IMP (MGI:6282938|PMID:23575678) UniProt PMID:23575678 MGI:6282938 NCBI chr 6:125,460,266...125,494,760
Ensembl chr 6:125,460,266...125,494,791
JBrowse link
G Mymk myomaker, myoblast fusion factor IMP (MGI:5608518|PMID:25085416) MGI PMID:25085416 MGI:5608518 NCBI chr 2:27,061,636...27,072,161
Ensembl chr 2:27,061,636...27,072,179
JBrowse link
G Mymx myomixer, myoblast fusion factor IMP (MGI:6153677|PMID:29581287) UniProt PMID:29581287 MGI:6153677 NCBI chr17:45,600,961...45,602,196
Ensembl chr17:45,600,971...45,602,102
JBrowse link
G Ptgfrn prostaglandin F2 receptor negative regulator IMP (MGI:6282938|PMID:23575678) UniProt PMID:23575678 MGI:6282938 NCBI chr 3:101,040,230...101,110,745
Ensembl chr 3:101,040,232...101,110,278
JBrowse link
G Synb syncytin b IMP (MGI:5800348|PMID:27589388) MGI PMID:27589388 MGI:5800348 NCBI chr14:69,290,378...69,312,408
Ensembl chr14:69,289,344...69,294,299
JBrowse link
myoblast migration involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akirin1 akirin 1 IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3850794|PMID:19406121)
GO_Central
UniProt
PMID:19406121, PMID:21873635 MGI:3850794, MGI:6201960 NCBI chr 4:123,735,195...123,750,299
Ensembl chr 4:123,734,559...123,750,345
JBrowse link
G Anxa1 annexin A1 IDA
IBA
(MGI:5619736|PMID:23144744)
(MGI:6201960|PMID:21873635)
CACAO
GO_Central
PMID:21873635, PMID:23144744 MGI:5619736, MGI:6201960 NCBI chr19:20,373,434...20,390,671
Ensembl chr19:20,373,428...20,390,944
JBrowse link
G Bin3 bridging integrator 3 IMP (MGI:5517720|PMID:23872330) MGI PMID:23872330 MGI:5517720 NCBI chr14:70,100,089...70,137,964
Ensembl chr14:70,100,105...70,138,206
JBrowse link
G Mstn myostatin IMP (MGI:3850794|PMID:19406121) UniProt PMID:19406121 MGI:3850794 NCBI chr 1:53,061,640...53,068,079
Ensembl chr 1:53,061,640...53,068,079
JBrowse link
myoblast proliferation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir682 microRNA 682 IMP (MGI:5139990|PMID:20841498) MGI PMID:20841498 MGI:5139990 NCBI chr13:75,645,046...75,645,141
Ensembl chr13:75,645,046...75,645,141
JBrowse link
myotube differentiation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl9 B cell CLL/lymphoma 9 IGI (MGI:4368064|PMID:19699733) MGI PMID:19699733 MGI:4368064 NCBI chr 3:97,203,658...97,298,402
Ensembl chr 3:97,203,662...97,297,917
JBrowse link
G Klf5 Kruppel-like factor 5 IDA
IMP
(MGI:5823533|PMID:27743478) MGI PMID:27743478 MGI:5823533 NCBI chr14:99,298,691...99,313,412
Ensembl chr14:99,298,691...99,315,036
JBrowse link
G Myod1 myogenic differentiation 1 IMP (MGI:48687|PMID:1348494) MGI PMID:1348494 MGI:48687 NCBI chr 7:46,376,474...46,379,092
Ensembl chr 7:46,376,474...46,379,099
JBrowse link
negative regulation of skeletal muscle tissue regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myoz1 myozenin 1 IMP (MGI:3831256|PMID:18846255) BHF-UCL PMID:18846255 MGI:3831256 NCBI chr14:20,649,102...20,656,540
Ensembl chr14:20,649,107...20,656,540
JBrowse link
positive regulation of satellite cell activation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Capn3 calpain 3 IDA (MGI:5306562|PMID:20139084) UniProt PMID:20139084 MGI:5306562 NCBI chr 2:120,463,593...120,504,919
Ensembl chr 2:120,463,572...120,504,918
Ensembl chr 2:120,463,572...120,504,918
JBrowse link
G Sox15 SRY (sex determining region Y)-box 15 IMP (MGI:3714565|PMID:17363903) BHF-UCL PMID:17363903 MGI:3714565 NCBI chr11:69,655,037...69,656,727
Ensembl chr11:69,655,314...69,656,727
JBrowse link
positive regulation of skeletal muscle tissue regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hopx HOP homeobox IMP (MGI:3708191|PMID:17192267) MGI PMID:17192267 MGI:3708191 NCBI chr 5:77,086,986...77,115,123
Ensembl chr 5:77,086,988...77,115,121
JBrowse link
G Mir675 microRNA 675 IMP (MGI:5566551|PMID:24532688) MGI PMID:24532688 MGI:5566551 NCBI chr 7:142,577,064...142,577,147
Ensembl chr 7:142,577,064...142,577,147
JBrowse link
G Myod1 myogenic differentiation 1 IMP (MGI:3692808|PMID:17028574) MGI PMID:17028574 MGI:3692808 NCBI chr 7:46,376,474...46,379,092
Ensembl chr 7:46,376,474...46,379,099
JBrowse link
G Ppard peroxisome proliferator activator receptor delta IMP (MGI:5319147|PMID:22040534) CACAO PMID:22040534 MGI:5319147 NCBI chr17:28,232,754...28,301,469
Ensembl chr17:28,232,700...28,301,474
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II ISO RGD PMID:10672325 RGD:1601614 NCBI chr 9:116,087,695...116,175,363
Ensembl chr 9:116,084,293...116,175,360
JBrowse link
regulation of satellite cell activation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gjd4 gap junction protein, delta 4 IMP (MGI:5008546|PMID:21272575) MGI PMID:21272575 MGI:5008546 NCBI chr18:9,278,124...9,289,808
Ensembl chr18:9,278,607...9,282,809
JBrowse link
regulation of skeletal muscle tissue regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G P2rx5 purinergic receptor P2X, ligand-gated ion channel, 5 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr11:73,155,389...73,172,687
Ensembl chr11:73,160,421...73,172,685
JBrowse link
G Spaar small regulatory polypeptide of amino acid response IMP (MGI:5822922|PMID:28024296) UniProt PMID:28024296 MGI:5822922 NCBI chr 4:43,730,034...43,734,534
Ensembl chr 4:43,730,034...43,759,462
JBrowse link
satellite cell activation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Klf5 Kruppel-like factor 5 IMP (MGI:5823533|PMID:27743478) MGI PMID:27743478 MGI:5823533 NCBI chr14:99,298,691...99,313,412
Ensembl chr14:99,298,691...99,315,036
JBrowse link
G Kpna1 karyopherin (importin) alpha 1 IMP (MGI:5823554|PMID:27434733) MGI PMID:27434733 MGI:5823554 NCBI chr16:35,983,288...36,037,136
Ensembl chr16:35,978,750...36,037,131
JBrowse link
skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit IMP (MGI:4950630|PMID:21498568) MGI PMID:21498568 MGI:4950630 NCBI chr 6:47,530,274...47,595,270
Ensembl chr 6:47,530,139...47,595,341
JBrowse link
G Fzd7 frizzled class receptor 7 IMP (MGI:3849215|PMID:19497282) MGI PMID:19497282 MGI:3849215 NCBI chr 1:59,482,147...59,486,955
Ensembl chr 1:59,482,424...59,486,955
JBrowse link
G Igf1 insulin-like growth factor 1 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr10:87,858,265...87,937,047
Ensembl chr10:87,858,265...87,937,042
JBrowse link
G Selenon selenoprotein N IMP (MGI:4936779|PMID:21131290) UniProt PMID:21131290 MGI:4936779 NCBI chr 4:134,537,892...134,552,166
Ensembl chr 4:134,537,892...134,552,166
JBrowse link
G Wnt7a wingless-type MMTV integration site family, member 7A IDA (MGI:3849215|PMID:19497282) MGI PMID:19497282 MGI:3849215 NCBI chr 6:91,363,981...91,411,353
Ensembl chr 6:91,363,981...91,411,363
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23386
    developmental process 7030
      developmental growth 834
        tissue regeneration 99
          skeletal muscle tissue regeneration 56
            myoblast differentiation involved in skeletal muscle regeneration + 4
            myoblast migration involved in skeletal muscle regeneration 4
            myoblast proliferation involved in skeletal muscle regeneration 1
            myotube differentiation involved in skeletal muscle regeneration + 9
            negative regulation of skeletal muscle tissue regeneration + 1
            positive regulation of skeletal muscle tissue regeneration + 7
            regulation of skeletal muscle tissue regeneration + 11
            satellite cell activation involved in skeletal muscle regeneration + 5
            skeletal muscle regeneration at neuromuscular junction 0
            skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration + 5
Path 2
Term Annotations click to browse term
  biological_process 23386
    developmental process 7030
      anatomical structure development 6504
        tissue development 2139
          tissue regeneration 99
            skeletal muscle tissue regeneration 56
              myoblast differentiation involved in skeletal muscle regeneration + 4
              myoblast migration involved in skeletal muscle regeneration 4
              myoblast proliferation involved in skeletal muscle regeneration 1
              myotube differentiation involved in skeletal muscle regeneration + 9
              negative regulation of skeletal muscle tissue regeneration + 1
              positive regulation of skeletal muscle tissue regeneration + 7
              regulation of skeletal muscle tissue regeneration + 11
              satellite cell activation involved in skeletal muscle regeneration + 5
              skeletal muscle regeneration at neuromuscular junction 0
              skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.