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ONTOLOGY REPORT - ANNOTATIONS


Term:skeletal muscle tissue regeneration
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Accession:GO:0043403 term browser browse the term
Definition:The regrowth of skeletal muscle tissue to repair injured or damaged muscle fibers in the postnatal stage.
Synonyms:related_synonym: myofiber turnover


show annotations for term's descendants           Sort by:
 
skeletal muscle tissue regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BIN3 bridging integrator 3 ISO (MGI:5517720|PMID:23872330) MGI PMID:23872330 MGI:5517720 NCBI chr14:6,874,281...6,926,950
Ensembl chr14:6,874,281...6,923,361
JBrowse link
G CFLAR CASP8 and FADD like apoptosis regulator IEA Ensembl GO_REF:0000107 NCBI chr15:104,780,744...104,835,631
Ensembl chr15:104,781,615...104,844,921
JBrowse link
G DAG1 dystroglycan 1 ISO RGD PMID:12086334 RGD:11541049 NCBI chr13:32,028,019...32,092,450
Ensembl chr13:32,029,329...32,092,453
JBrowse link
G DMD dystrophin ISO RGD PMID:12086334 RGD:11541049 NCBI chr  X:27,028,223...29,650,728
Ensembl chr  X:27,028,223...29,181,689
JBrowse link
G DYSF dysferlin IEA Ensembl GO_REF:0000107 NCBI chr 3:71,020,143...71,237,658
Ensembl chr 3:71,020,141...71,246,967
JBrowse link
G ENO3 enolase 3 ISO RGD PMID:16752196 RGD:2301764 NCBI chr12:51,954,614...51,959,991
Ensembl chr12:51,954,614...51,963,223
JBrowse link
G EYS eyes shut homolog ISO (PMID:21826682) UniProtKB PMID:21826682 NCBI chr 1:45,306,446...46,649,722 JBrowse link
G GJA1 gap junction protein alpha 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:40,988,818...41,002,129
Ensembl chr 1:40,988,515...41,002,137
JBrowse link
G GPX1 glutathione peroxidase 1 IEA Ensembl GO_REF:0000107 NCBI chr13:31,916,269...31,917,337
Ensembl chr13:31,914,932...31,917,335
JBrowse link
G IFRD1 interferon related developmental regulator 1 IEA Ensembl GO_REF:0000107 NCBI chr18:33,198,002...33,248,912
Ensembl chr18:33,165,376...33,248,297
JBrowse link
G KLF5 Kruppel like factor 5 ISO (MGI:5823533|PMID:27743478) MGI PMID:27743478 MGI:5823533 NCBI chr11:45,370,009...45,386,673
Ensembl chr11:45,369,797...45,388,314
JBrowse link
G KPNA1 karyopherin subunit alpha 1 ISO (MGI:5823554|PMID:27434733) MGI PMID:27434733 MGI:5823554 NCBI chr13:138,045,083...138,100,830
Ensembl chr13:137,970,489...138,105,545
JBrowse link
G LARGE1 LARGE xylosyl- and glucuronyltransferase 1 ISO (MGI:5547845|PMID:24132234) UniProt PMID:24132234 MGI:5547845
G LOC110261530 uncharacterized LOC110261530 ISO (MGI:6153677|PMID:29581287) UniProt PMID:29581287 MGI:6153677 NCBI chr 7:39,215,933...39,217,275 JBrowse link
G MSTN myostatin ISO RGD PMID:11206133 RGD:2303599 NCBI chr15:94,623,526...94,628,440
Ensembl chr15:94,620,269...94,628,546
JBrowse link
G MTPN myotrophin ISO RGD PMID:12467730 RGD:632798 NCBI chr18:13,330,049...13,395,297
Ensembl chr18:13,330,091...13,400,046
JBrowse link
G MYF6 myogenic factor 6 ISO RGD PMID:12707053 RGD:1600530 NCBI chr 5:100,762,918...100,764,771
Ensembl chr 5:100,762,910...100,765,704
JBrowse link
G MYMK myomaker, myoblast fusion factor ISO (MGI:5608518|PMID:25085416) MGI PMID:25085416 MGI:5608518 NCBI chr 1:273,101,674...273,111,721
Ensembl chr 1:273,101,674...273,111,727
JBrowse link
G MYOD1 myogenic differentiation 1 ISO (MGI:5706660|PMID:26658965) RGD
MGI
PMID:12063168, PMID:18077604, PMID:26658965 MGI:5706660, RGD:729226, RGD:9686074 NCBI chr 2:41,422,522...41,424,236
Ensembl chr 2:41,415,735...41,425,234
JBrowse link
G MYOG myogenin ISO RGD PMID:10867795 RGD:9686125 NCBI chr 9:113,783,233...113,785,312
Ensembl chr 9:113,782,469...113,785,362
JBrowse link
G NACA nascent polypeptide associated complex subunit alpha ISO (MGI:4867362|PMID:21071677) BHF-UCL PMID:21071677 MGI:4867362 NCBI chr 5:22,044,569...22,058,096 JBrowse link
G PAX7 paired box 7 IEA Ensembl GO_REF:0000107 NCBI chr 6:77,160,827...77,268,626
Ensembl chr 6:77,161,097...77,267,415
JBrowse link
G PKM pyruvate kinase, muscle ISO RGD PMID:145474 RGD:2303143 NCBI chr 7:60,971,807...61,032,780 JBrowse link
G PLAU plasminogen activator, urokinase ISO RGD PMID:12919869 RGD:1581928 NCBI chr14:76,629,313...76,635,173
Ensembl chr14:76,629,299...76,635,172
JBrowse link
G PLAUR plasminogen activator, urokinase receptor ISO RGD PMID:12919869 RGD:1581928 NCBI chr 6:50,489,773...50,505,453
Ensembl chr 6:50,489,777...50,505,418
JBrowse link
G SELENON selenoprotein N ISO (MGI:4936779|PMID:21131290) MGI PMID:21131290 MGI:4936779 NCBI chr 6:83,246,934...83,262,748 JBrowse link
G SGCA sarcoglycan alpha ISO RGD PMID:12086334 RGD:11541049 NCBI chr12:26,356,691...26,368,561
Ensembl chr12:26,356,773...26,371,601
JBrowse link
G SOX15 SRY-box transcription factor 15 ISO (MGI:3055629|PMID:15367664) MGI PMID:15367664 MGI:3055629 NCBI chr12:52,882,840...52,885,785 JBrowse link
G TARBP2 TARBP2 subunit of RISC loading complex IEA Ensembl GO_REF:0000107 NCBI chr 5:18,718,588...18,723,843
Ensembl chr 5:18,718,158...18,723,843
JBrowse link
G VIM vimentin ISO RGD PMID:18941770 RGD:6480441 NCBI chr10:43,516,441...43,526,172
Ensembl chr10:43,517,307...43,526,172
JBrowse link
G WNT10B Wnt family member 10B ISO (MGI:3581945|PMID:15673614) MGI PMID:15673614 MGI:3581945 NCBI chr 5:14,997,377...15,013,928
Ensembl chr 5:14,997,381...15,013,919
JBrowse link
myoblast differentiation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DICER1 dicer 1, ribonuclease III ISO (MGI:5312165|PMID:22358842) MGI PMID:22358842 MGI:5312165 NCBI chr 7:116,361,630...116,436,471
Ensembl chr 7:116,361,630...116,436,519
JBrowse link
G MAPK14 mitogen-activated protein kinase 14 ISO (MGI:4838005|PMID:20610565) MGI PMID:20610565 MGI:4838005 NCBI chr 7:31,791,398...31,861,544
Ensembl chr 7:31,790,104...31,862,038
JBrowse link
G MIR489 microRNA mir-489 ISO (MGI:5312165|PMID:22358842) MGI PMID:22358842 MGI:5312165 NCBI chr 9:73,330,690...73,330,770
Ensembl chr 9:73,330,690...73,330,770
JBrowse link
G WNT10B Wnt family member 10B IEA Ensembl GO_REF:0000107 NCBI chr 5:14,997,377...15,013,928
Ensembl chr 5:14,997,381...15,013,919
JBrowse link
myoblast fusion involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD81 CD81 molecule IEA Ensembl GO_REF:0000107 NCBI chr 2:1,625,728...1,641,662
Ensembl chr 2:1,506,652...1,641,667
JBrowse link
G CD9 CD9 molecule ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 5:64,420,177...64,459,783
Ensembl chr 5:64,420,182...64,460,304
JBrowse link
G LOC110261530 uncharacterized LOC110261530 ISO (MGI:6153677|PMID:29581287) UniProt PMID:29581287 MGI:6153677 NCBI chr 7:39,215,933...39,217,275 JBrowse link
G MYMK myomaker, myoblast fusion factor IEA Ensembl GO_REF:0000107 NCBI chr 1:273,101,674...273,111,721
Ensembl chr 1:273,101,674...273,111,727
JBrowse link
G PTGFRN prostaglandin F2 receptor inhibitor IEA Ensembl GO_REF:0000107 NCBI chr 4:103,747,007...103,835,192
Ensembl chr 4:103,745,181...103,793,138
JBrowse link
myoblast migration involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKIRIN1 akirin 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:94,891,409...94,902,700
Ensembl chr 6:94,891,362...94,905,664
JBrowse link
G ANXA1 annexin A1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:226,414,200...226,431,963
Ensembl chr 1:226,414,307...226,432,287
JBrowse link
G BIN3 bridging integrator 3 IEA Ensembl GO_REF:0000107 NCBI chr14:6,874,281...6,926,950
Ensembl chr14:6,874,281...6,923,361
JBrowse link
G MSTN myostatin ISS UniProt GO_REF:0000024 NCBI chr15:94,623,526...94,628,440
Ensembl chr15:94,620,269...94,628,546
JBrowse link
myotube differentiation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL9 BCL9 transcription coactivator IEA Ensembl GO_REF:0000107 NCBI chr 4:99,970,388...100,058,291
Ensembl chr 4:99,970,395...100,058,188
JBrowse link
G KLF5 Kruppel like factor 5 ISO (MGI:5823533|PMID:27743478) MGI PMID:27743478 MGI:5823533 NCBI chr11:45,370,009...45,386,673
Ensembl chr11:45,369,797...45,388,314
JBrowse link
G MYOD1 myogenic differentiation 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:41,422,522...41,424,236
Ensembl chr 2:41,415,735...41,425,234
JBrowse link
negative regulation of skeletal muscle tissue regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MYOZ1 myozenin 1 IEA Ensembl GO_REF:0000107 NCBI chr14:76,445,109...76,453,014
Ensembl chr14:76,444,540...76,452,799
JBrowse link
positive regulation of satellite cell activation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAPN3 calpain 3 ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 1:128,960,117...129,013,508
Ensembl chr 1:128,960,121...129,013,547
JBrowse link
G SOX15 SRY-box transcription factor 15 ISO (MGI:3714565|PMID:17363903) BHF-UCL PMID:17363903 MGI:3714565 NCBI chr12:52,882,840...52,885,785 JBrowse link
positive regulation of skeletal muscle tissue regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOPX HOP homeobox ISO (MGI:3708191|PMID:17192267) MGI PMID:17192267 MGI:3708191 NCBI chr 8:55,862,191...55,901,628 JBrowse link
G MYOD1 myogenic differentiation 1 ISS
IEA
(PMID:17028574) UniProt
Ensembl
PMID:17028574 GO_REF:0000107 NCBI chr 2:41,422,522...41,424,236
Ensembl chr 2:41,415,735...41,425,234
JBrowse link
G PPARD peroxisome proliferator activated receptor delta IEA Ensembl GO_REF:0000107 NCBI chr 7:31,222,533...31,295,221
Ensembl chr 7:31,222,589...31,295,212
JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 ISO RGD PMID:10672325 RGD:1601614 NCBI chr13:16,784,370...16,875,828
Ensembl chr13:16,784,491...16,878,165
JBrowse link
regulation of satellite cell activation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GJD4 gap junction protein delta 4 ISO (MGI:5008546|PMID:21272575) MGI PMID:21272575 MGI:5008546 NCBI chr10:58,069,679...58,076,738 JBrowse link
regulation of skeletal muscle tissue regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G P2RX5 purinergic receptor P2X 5 ISO RGD PMID:12135987 RGD:729229 NCBI chr12:49,780,241...49,796,287 JBrowse link
satellite cell activation involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KLF5 Kruppel like factor 5 ISO (MGI:5823533|PMID:27743478) MGI PMID:27743478 MGI:5823533 NCBI chr11:45,370,009...45,386,673
Ensembl chr11:45,369,797...45,388,314
JBrowse link
G KPNA1 karyopherin subunit alpha 1 ISO (MGI:5823554|PMID:27434733) MGI PMID:27434733 MGI:5823554 NCBI chr13:138,045,083...138,100,830
Ensembl chr13:137,970,489...138,105,545
JBrowse link
skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit IEA Ensembl GO_REF:0000107 NCBI chr 9:109,384,976...109,450,943
Ensembl chr 9:109,384,995...109,450,941
JBrowse link
G FZD7 frizzled class receptor 7 IEA Ensembl GO_REF:0000107 NCBI chr15:105,644,164...105,648,860
Ensembl chr15:105,644,188...105,648,854
JBrowse link
G IGF1 insulin like growth factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:81,762,027...81,909,253
Ensembl chr 5:81,775,970...81,848,037
JBrowse link
G SELENON selenoprotein N IEA Ensembl GO_REF:0000107 NCBI chr 6:83,246,934...83,262,748 JBrowse link
G WNT7A Wnt family member 7A IEA Ensembl GO_REF:0000107 NCBI chr13:70,538,802...70,602,464
Ensembl chr13:70,538,894...70,602,455
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16548
    developmental process 6302
      developmental growth 796
        tissue regeneration 91
          skeletal muscle tissue regeneration 51
            myoblast differentiation involved in skeletal muscle regeneration + 4
            myoblast migration involved in skeletal muscle regeneration 4
            myoblast proliferation involved in skeletal muscle regeneration 0
            myotube differentiation involved in skeletal muscle regeneration + 8
            negative regulation of skeletal muscle tissue regeneration + 1
            positive regulation of skeletal muscle tissue regeneration + 6
            regulation of skeletal muscle tissue regeneration + 9
            satellite cell activation involved in skeletal muscle regeneration + 5
            skeletal muscle regeneration at neuromuscular junction 0
            skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration + 5
Path 2
Term Annotations click to browse term
  biological_process 16548
    developmental process 6302
      anatomical structure development 5842
        tissue development 2015
          tissue regeneration 91
            skeletal muscle tissue regeneration 51
              myoblast differentiation involved in skeletal muscle regeneration + 4
              myoblast migration involved in skeletal muscle regeneration 4
              myoblast proliferation involved in skeletal muscle regeneration 0
              myotube differentiation involved in skeletal muscle regeneration + 8
              negative regulation of skeletal muscle tissue regeneration + 1
              positive regulation of skeletal muscle tissue regeneration + 6
              regulation of skeletal muscle tissue regeneration + 9
              satellite cell activation involved in skeletal muscle regeneration + 5
              skeletal muscle regeneration at neuromuscular junction 0
              skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.