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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of secondary metabolic process
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Accession:GO:0043455 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of secondary metabolism, the chemical reactions and pathways involving compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon.
Synonyms:exact_synonym: regulation of secondary metabolism


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negative regulation of melanin biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mfsd12 major facilitator superfamily domain containing 12 ISO (MGI:MGI:5912387|PMID:29025994) RGD PMID:29025994 MGI:MGI:5912387 NCBI chr 7:11,214,832...11,223,713
Ensembl chr 7:11,216,975...11,223,649
JBrowse link
G Opn3 opsin 3 ISO
IEA
(PMID:31097585)
GO_REF:0000107
RGD
Ensembl
PMID:31097585 GO_REF:0000107 NCBI chr13:93,716,481...93,746,994
Ensembl chr13:93,716,481...93,746,994
JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor 2 ISO
ISS
(MGI:MGI:5499726|PMID:16272156)
GO_REF:0000024
RGD
UniProt
PMID:16272156 GO_REF:0000024, MGI:MGI:5499726 NCBI chr 2:177,836,191...178,057,378
Ensembl chr 2:177,836,202...178,057,157
JBrowse link
G Slc24a5 solute carrier family 24 member 5 ISO (MGI:MGI:3775882|PMID:18166528) RGD PMID:18166528 MGI:MGI:3775882 NCBI chr 3:117,335,212...117,354,480
Ensembl chr 3:117,335,212...117,354,480
JBrowse link
G Wnt5a Wnt family member 5A ISO
IEA
(MGI:MGI:5619434|PMID:23569434)
GO_REF:0000107
RGD
Ensembl
PMID:23569434 GO_REF:0000107, MGI:MGI:5619434 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
positive regulation of melanin biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 ISO (PMID:21291857) RGD PMID:21291857 NCBI chr16:2,560,103...2,602,035
Ensembl chr16:2,563,520...2,602,103
JBrowse link
G Asip agouti signaling protein ISO
IBA
UniProtKB:P07147|UniProtKB:Q60696 (MGI:MGI:5294257|PMID:21949658)
PMID:21873635
RGD PMID:21949658, PMID:21873635 MGI:MGI:5294257, RGD:13792537 NCBI chr 3:150,492,010...150,579,870
Ensembl chr 3:150,574,473...150,579,870
JBrowse link
G Cdh3 cadherin 3 ISO (PMID:23334344) RGD PMID:23334344 NCBI chr19:38,668,957...38,719,801
Ensembl chr19:38,669,230...38,719,677
JBrowse link
G Gipc1 GIPC PDZ domain containing family, member 1 ISS
ISO
GO_REF:0000024
(PMID:21291857)
UniProt
RGD
PMID:21291857 GO_REF:0000024 NCBI chr19:24,786,604...24,798,231
Ensembl chr19:24,786,628...24,798,233
JBrowse link
G Opn3 opsin 3 ISO
IEA
(PMID:28842328)
GO_REF:0000107
RGD
Ensembl
PMID:28842328 GO_REF:0000107 NCBI chr13:93,716,481...93,746,994
Ensembl chr13:93,716,481...93,746,994
JBrowse link
G Pmel premelanosome protein ISO (MGI:MGI:5294257|PMID:21949658) RGD PMID:21949658 MGI:MGI:5294257 NCBI chr 7:3,133,347...3,143,827
Ensembl chr 7:3,133,506...3,143,911
JBrowse link
G Tyrp1 tyrosinase-related protein 1 ISO (PMID:21996312)
UniProtKB:Q03288|UniProtKB:Q60696 (MGI:MGI:5294257|PMID:21949658)
RGD PMID:21949658, PMID:21996312 MGI:MGI:5294257 NCBI chr 5:98,387,291...98,406,083
Ensembl chr 5:98,387,291...98,406,083
JBrowse link
regulation of melanin biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc7a11 solute carrier family 7 member 11 ISO MGI:MGI:1857061 (MGI:MGI:3588610|PMID:16037214) RGD PMID:16037214 MGI:MGI:3588610 NCBI chr 2:139,453,774...139,528,479
Ensembl chr 2:139,453,774...139,528,162
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      regulation of metabolic process 6985
        regulation of secondary metabolic process 12
          regulation of abscisic acid biosynthetic process + 0
          regulation of fumagillin biosynthetic process + 0
          regulation of gibberellin biosynthetic process + 0
          regulation of juvenile hormone metabolic process + 0
          regulation of melanization defense response + 0
          regulation of penicillin metabolic process + 0
          regulation of phenylpropanoid metabolic process + 0
          regulation of phytoalexin metabolic process + 0
          regulation of secondary metabolite biosynthetic process + 12
Path 2
Term Annotations click to browse term
  biological_process 20027
    biological regulation 13773
      regulation of biological process 13075
        regulation of metabolic process 6985
          regulation of secondary metabolic process 12
            regulation of abscisic acid biosynthetic process + 0
            regulation of fumagillin biosynthetic process + 0
            regulation of gibberellin biosynthetic process + 0
            regulation of juvenile hormone metabolic process + 0
            regulation of melanization defense response + 0
            regulation of penicillin metabolic process + 0
            regulation of phenylpropanoid metabolic process + 0
            regulation of phytoalexin metabolic process + 0
            regulation of secondary metabolite biosynthetic process + 12
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.