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ONTOLOGY REPORT - ANNOTATIONS


Term:pigmentation
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Accession:GO:0043473 term browser browse the term
Definition:The accumulation of pigment in an organism, tissue or cell, either by increased deposition or by increased number of cells.
Synonyms:only_in_taxon: NCBITaxon:131567 ! cellular organisms


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pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ARCN1 archain 1 JBrowse link 11 117,341,427 117,371,589 RGD:9068941
G ATP7A ATPase copper transporting alpha JBrowse link X 77,205,579 77,342,762 RGD:9068941
G ATRN attractin JBrowse link 20 3,315,241 3,490,901 RGD:9068941
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 JBrowse link X 71,621,785 71,627,300 RGD:9068941
G DRD2 dopamine receptor D2 JBrowse link 11 112,132,703 112,168,583 RGD:9068941
G EDA ectodysplasin A JBrowse link X 68,946,036 69,371,175 RGD:9068941
G EDAR ectodysplasin A receptor JBrowse link 2A 110,146,499 110,241,556 RGD:9068941
G FIG4 FIG4 phosphoinositide 5-phosphatase JBrowse link 6 111,539,937 111,673,894 RGD:9068941
G HPS3 HPS3 biogenesis of lysosomal organelles complex 2 subunit 1 JBrowse link 3 153,725,008 153,769,060 RGD:9068941
G HPS5 HPS5 biogenesis of lysosomal organelles complex 2 subunit 2 JBrowse link 11 17,991,610 18,042,848 RGD:9068941
G KIT KIT proto-oncogene, receptor tyrosine kinase JBrowse link 4 75,761,946 75,844,473 RGD:9068941
G KRT76 keratin 76 JBrowse link 12 36,761,017 36,770,200 RGD:9068941
G LYST lysosomal trafficking regulator JBrowse link 1 216,231,824 216,436,293 RGD:9068941
G MYSM1 Myb like, SWIRM and MPN domains 1 JBrowse link 1 59,621,583 59,666,843 RGD:9068941
G NF1 neurofibromin 1 JBrowse link 17 26,160,857 26,439,295 RGD:9068941
G RACK1 receptor for activated C kinase 1 JBrowse link 5 183,712,665 183,720,128 RGD:9068941
G SNAI2 snail family transcriptional repressor 2 JBrowse link 8 42,727,135 42,730,736 RGD:9068941
G SPARC secreted protein acidic and cysteine rich JBrowse link 5 153,091,160 153,115,745 RGD:9068941
G SZT2 SZT2 subunit KICSTOR complex JBrowse link 1 44,068,936 44,130,135 RGD:9068941
G TH tyrosine hydroxylase JBrowse link 11 2,234,095 2,242,030 RGD:9068941
G TYR tyrosinase JBrowse link 11 87,769,989 87,888,138 RGD:9068941
G VANGL1 VANGL planar cell polarity protein 1 JBrowse link 1 121,915,093 121,970,552 RGD:9068941
cellular pigment accumulation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SHROOM2 shroom family member 2 JBrowse link X 9,673,879 9,832,733 RGD:9068941
G SHROOM3 shroom family member 3 JBrowse link 4 53,256,674 53,607,120 RGD:9068941
cellular pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G POMC proopiomelanocortin JBrowse link 2A 25,258,768 25,266,806 RGD:9068941
developmental pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCL2L11 BCL2 like 11 JBrowse link 2A 112,337,927 112,385,079 RGD:9068941
G DCT dopachrome tautomerase JBrowse link 13 94,773,794 94,886,791 RGD:9068941
G GNA11 G protein subunit alpha 11 JBrowse link 19 3,074,484 3,102,124 RGD:9068941
G SLC45A2 solute carrier family 45 member 2 JBrowse link 5 81,743,254 81,784,565 RGD:9068941
G ZEB2 zinc finger E-box binding homeobox 2 JBrowse link 2B 148,460,904 148,596,500 RGD:9068941
endosome to melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ANKRD27 ankyrin repeat domain 27 JBrowse link 19 38,264,485 38,342,604 RGD:9068941
G AP1G1 adaptor related protein complex 1 subunit gamma 1 JBrowse link 16 71,568,856 71,648,744 RGD:9068941
G AP1M1 adaptor related protein complex 1 subunit mu 1 JBrowse link 19 16,665,846 16,703,067 RGD:9068941
G AP3D1 adaptor related protein complex 3 subunit delta 1 JBrowse link 19 2,084,349 2,135,058 RGD:9068941
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link 6 8,133,721 8,184,127 RGD:9068941
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link 15 42,862,114 42,882,321 RGD:9068941
G CD63 CD63 molecule JBrowse link 12 33,906,343 33,910,595 RGD:9068941
G RAB32 RAB32, member RAS oncogene family JBrowse link 6 149,053,727 149,069,059 RGD:9068941
G RAB38 RAB38, member RAS oncogene family JBrowse link 11 86,710,358 86,772,796 RGD:9068941
establishment of melanosome localization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RAB17 RAB17, member RAS oncogene family JBrowse link 2B 243,654,176 243,671,003 RGD:9068941
G SHROOM2 shroom family member 2 JBrowse link X 9,673,879 9,832,733 RGD:9068941
eye pigment biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AP3D1 adaptor related protein complex 3 subunit delta 1 JBrowse link 19 2,084,349 2,135,058 RGD:9068941
G GPR143 G protein-coupled receptor 143 JBrowse link X 9,609,597 9,650,069 RGD:9068941
G OCA2 OCA2 melanosomal transmembrane protein JBrowse link 15 25,181,417 25,523,703 RGD:9068941
G TYR tyrosinase JBrowse link 11 87,769,989 87,888,138 RGD:9068941
eye pigment granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SHROOM2 shroom family member 2 JBrowse link X 9,673,879 9,832,733 RGD:9068941
eye pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP6AP2 ATPase H+ transporting accessory protein 2 JBrowse link X 40,730,677 40,756,209 RGD:9068941
G LEF1 lymphoid enhancer binding factor 1 JBrowse link 4 111,125,312 111,245,980 RGD:9068941
melanocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCL2 BCL2 apoptosis regulator JBrowse link 18 59,797,184 59,993,298 RGD:9068941
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link 15 42,862,114 42,882,321 RGD:9068941
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 JBrowse link X 71,621,785 71,627,300 RGD:9068941
G EDN3 endothelin 3 JBrowse link 20 57,012,926 57,038,570 RGD:9068941
G EDNRB endothelin receptor type B JBrowse link 13 78,153,026 78,177,281 RGD:9068941
G GLI3 GLI family zinc finger 3 JBrowse link 7 42,056,566 42,322,865 RGD:9068941
G HPS4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 JBrowse link 22 25,235,761 25,268,699 RGD:9068941
G HPS6 HPS6 biogenesis of lysosomal organelles complex 2 subunit 3 JBrowse link 10 102,139,235 102,142,002 RGD:9068941
G KIT KIT proto-oncogene, receptor tyrosine kinase JBrowse link 4 75,761,946 75,844,473 RGD:9068941
G LRMDA leucine rich melanocyte differentiation associated JBrowse link 10 74,974,055 75,747,123 RGD:9068941
G MEF2C myocyte enhancer factor 2C JBrowse link 5 26,620,837 26,786,426 RGD:9068941
G MITF melanocyte inducing transcription factor JBrowse link 3 71,037,671 71,265,445 RGD:9068941
G MREG melanoregulin JBrowse link 2B 221,807,379 221,877,814 RGD:9068941
G MYO5A myosin VA JBrowse link 15 49,572,084 49,699,507 RGD:9068941
G OCA2 OCA2 melanosomal transmembrane protein JBrowse link 15 25,181,417 25,523,703 RGD:9068941
G RAB27A RAB27A, member RAS oncogene family JBrowse link 15 52,498,202 52,584,731 RGD:9068941
G SLC24A5 solute carrier family 24 member 5 JBrowse link 15 45,394,090 45,415,550 RGD:9068941
G SOX10 SRY-box 10 JBrowse link 22 36,712,128 36,724,192 RGD:9068941
G TYRP1 tyrosinase related protein 1 JBrowse link 9 12,950,831 12,996,808 RGD:9068941
G USP13 ubiquitin specific peptidase 13 JBrowse link 3 184,856,295 184,988,305 RGD:9068941
melanosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HPS1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 JBrowse link 10 98,526,127 98,556,629 RGD:9068941
G HPS4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 JBrowse link 22 25,235,761 25,268,699 RGD:9068941
G RAB32 RAB32, member RAS oncogene family JBrowse link 6 149,053,727 149,069,059 RGD:9068941
G RAB38 RAB38, member RAS oncogene family JBrowse link 11 86,710,358 86,772,796 RGD:9068941
G TRAPPC6A trafficking protein particle complex 6A JBrowse link 19 50,713,498 50,727,579 RGD:9068941
melanosome localization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GPR143 G protein-coupled receptor 143 JBrowse link X 9,609,597 9,650,069 RGD:9068941
G MREG melanoregulin JBrowse link 2B 221,807,379 221,877,814 RGD:9068941
G RAB27A RAB27A, member RAS oncogene family JBrowse link 15 52,498,202 52,584,731 RGD:9068941
G VPS33A VPS33A core subunit of CORVET and HOPS complexes JBrowse link 12 123,200,964 123,236,132 RGD:9068941
G VPS33B VPS33B late endosome and lysosome associated JBrowse link 15 88,888,093 88,912,322 RGD:9068941
melanosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AP1G1 adaptor related protein complex 1 subunit gamma 1 JBrowse link 16 71,568,856 71,648,744 RGD:9068941
G AP1M1 adaptor related protein complex 1 subunit mu 1 JBrowse link 19 16,665,846 16,703,067 RGD:9068941
G AP3B1 adaptor related protein complex 3 subunit beta 1 JBrowse link 5 37,502,986 37,835,904 RGD:9068941
G AP3D1 adaptor related protein complex 3 subunit delta 1 JBrowse link 19 2,084,349 2,135,058 RGD:9068941
G ASIP agouti signaling protein JBrowse link 20 31,718,169 31,727,217 RGD:9068941
G BLOC1S1 biogenesis of lysosomal organelles complex 1 subunit 1 JBrowse link 12 33,916,401 33,920,078 RGD:9068941
G BLOC1S2 biogenesis of lysosomal organelles complex 1 subunit 2 JBrowse link 10 100,358,095 100,368,640 RGD:9068941
G BLOC1S4 biogenesis of lysosomal organelles complex 1 subunit 4 JBrowse link 4 6,787,798 6,789,100 RGD:9068941
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link 6 8,133,721 8,184,127 RGD:9068941
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link 15 42,862,114 42,882,321 RGD:9068941
G DTNBP1 dystrobrevin binding protein 1 JBrowse link 6 15,741,698 15,887,039 RGD:9068941
G GPR143 G protein-coupled receptor 143 JBrowse link X 9,609,597 9,650,069 RGD:9068941
G KIF13A kinesin family member 13A JBrowse link 6 17,969,799 18,190,286 RGD:9068941
G LYST lysosomal trafficking regulator JBrowse link 1 216,231,824 216,436,293 RGD:9068941
G PMEL premelanosome protein JBrowse link 12 33,196,656 33,207,610 RGD:9068941
G SHROOM2 shroom family member 2 JBrowse link X 9,673,879 9,832,733 RGD:9068941
G SNAPIN SNAP associated protein JBrowse link 1 132,644,319 132,647,095 RGD:9068941
G TYRP1 tyrosinase related protein 1 JBrowse link 9 12,950,831 12,996,808 RGD:9068941
melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ARL6 ADP ribosylation factor like GTPase 6 JBrowse link 3 101,519,718 101,556,419 RGD:9068941
G ASIP agouti signaling protein JBrowse link 20 31,718,169 31,727,217 RGD:9068941
G BBS2 Bardet-Biedl syndrome 2 JBrowse link 16 55,902,945 55,940,053 RGD:9068941
G BBS4 Bardet-Biedl syndrome 4 JBrowse link 15 70,362,007 70,416,964 RGD:9068941
G BBS5 Bardet-Biedl syndrome 5 JBrowse link 2B 174,220,825 174,245,820 RGD:9068941
G BBS7 Bardet-Biedl syndrome 7 JBrowse link 4 125,161,804 125,208,350 RGD:9068941
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link 6 8,133,721 8,184,127 RGD:9068941
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link 15 42,862,114 42,882,321 RGD:9068941
G DCTN2 dynactin subunit 2 JBrowse link 12 31,638,272 31,655,458 RGD:9068941
G GPR143 G protein-coupled receptor 143 JBrowse link X 9,609,597 9,650,069 RGD:9068941
G MKKS McKusick-Kaufman syndrome JBrowse link 20 10,351,246 10,380,503 RGD:9068941
G MLPH melanophilin JBrowse link 2B 243,569,782 243,633,177 RGD:9068941
G MREG melanoregulin JBrowse link 2B 221,807,379 221,877,814 RGD:9068941
G MYO5A myosin VA JBrowse link 15 49,572,084 49,699,507 RGD:9068941
G RAB11A RAB11A, member RAS oncogene family JBrowse link 15 63,088,084 63,108,077 RGD:9068941
G RAB11B RAB11B, member RAS oncogene family JBrowse link 19 8,526,294 8,540,147 RGD:9068941
G RAB17 RAB17, member RAS oncogene family JBrowse link 2B 243,654,176 243,671,003 RGD:9068941
G RAB1A RAB1A, member RAS oncogene family JBrowse link 2A 66,274,809 66,318,290 RGD:9068941
G RAB27A RAB27A, member RAS oncogene family JBrowse link 15 52,498,202 52,584,731 RGD:9068941
G RAB27B RAB27B, member RAS oncogene family JBrowse link 18 51,435,717 51,610,156 RGD:9068941
negative regulation of eye pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IHH Indian hedgehog signaling molecule JBrowse link 2B 224,905,488 224,917,887 RGD:9068941
pigment granule aggregation in cell center term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BBS7 Bardet-Biedl syndrome 7 JBrowse link 4 125,161,804 125,208,350 RGD:9068941
G MKKS McKusick-Kaufman syndrome JBrowse link 20 10,351,246 10,380,503 RGD:9068941
pigment granule maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CD63 CD63 molecule JBrowse link 12 33,906,343 33,910,595 RGD:9068941
pigment granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCL2 BCL2 apoptosis regulator JBrowse link 18 59,797,184 59,993,298 RGD:9068941
pigment granule transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MYO7A myosin VIIA JBrowse link 11 75,834,409 75,908,297 RGD:9068941
positive regulation of developmental pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BAX BCL2 associated X, apoptosis regulator JBrowse link 19 54,793,594 54,800,466 RGD:9068941
positive regulation of eye pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HPS4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 JBrowse link 22 25,235,761 25,268,699 RGD:9068941
positive regulation of melanocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 JBrowse link 12 46,046,276 46,236,813 RGD:9068941
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 JBrowse link 3 65,792,223 65,967,631 RGD:9068941
G BCL2 BCL2 apoptosis regulator JBrowse link 18 59,797,184 59,993,298 RGD:9068941
G KITLG KIT ligand JBrowse link 12 89,341,921 89,436,081 RGD:9068941
G ZEB2 zinc finger E-box binding homeobox 2 JBrowse link 2B 148,460,904 148,596,500 RGD:9068941
positive regulation of melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDH3 cadherin 3 JBrowse link 16 68,408,078 68,465,287 RGD:9068941
positive regulation of pigment cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link 6 8,133,721 8,184,127 RGD:9068941
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link 15 42,862,114 42,882,321 RGD:9068941
regulation of developmental pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCL2L11 BCL2 like 11 JBrowse link 2A 112,337,927 112,385,079 RGD:9068941
G EDN3 endothelin 3 JBrowse link 20 57,012,926 57,038,570 RGD:9068941
G KIT KIT proto-oncogene, receptor tyrosine kinase JBrowse link 4 75,761,946 75,844,473 RGD:9068941
G VPS33A VPS33A core subunit of CORVET and HOPS complexes JBrowse link 12 123,200,964 123,236,132 RGD:9068941
regulation of eye pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SPNS2 sphingolipid transporter 2 JBrowse link 17 4,547,588 4,586,562 RGD:9068941
regulation of melanocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GNA11 G protein subunit alpha 11 JBrowse link 19 3,074,484 3,102,124 RGD:9068941
regulation of melanosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GPR143 G protein-coupled receptor 143 JBrowse link X 9,609,597 9,650,069 RGD:9068941
G ZEB2 zinc finger E-box binding homeobox 2 JBrowse link 2B 148,460,904 148,596,500 RGD:9068941
regulation of melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GPR143 G protein-coupled receptor 143 JBrowse link X 9,609,597 9,650,069 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15669
    pigmentation 93
      cellular pigmentation + 49
      developmental pigmentation + 44
      ocellus pigmentation + 0
      pigment accumulation + 11
      pigment metabolic process involved in pigmentation + 4
paths to the root