FTP Download
Chinchilla Research Resource Database
   
Keyword
  

ONTOLOGY REPORT - ANNOTATIONS


Term:pigmentation
go back to main search page
Accession:GO:0043473 term browser browse the term
Definition:The accumulation of pigment in an organism, tissue or cell, either by increased deposition or by increased number of cells.
Synonyms:only_in_taxon: NCBITaxon:131567 ! cellular organisms


GViewer not supported for chinchilla.
show annotations for term's descendants       view all columns           Sort by:
 
pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arcn1 archain 1 JBrowse link NW_004955412 19,718,534 19,750,340 RGD:9068941
G Atp7a ATPase copper transporting alpha JBrowse link NW_004955557 1,355,471 1,515,725 RGD:9068941
G Atrn attractin JBrowse link NW_004955415 14,341,635 14,505,955 RGD:9068941
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 JBrowse link NW_004955555 2,183,752 2,186,154 RGD:9068941
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 JBrowse link NW_004955475 11,722,514 11,725,067 RGD:9068941
G Drd2 dopamine receptor D2 JBrowse link NW_004955412 15,054,255 15,114,558 RGD:9068941
G Eda ectodysplasin A JBrowse link NW_004955475 9,177,911 9,592,150 RGD:9068941
G Edar ectodysplasin A receptor JBrowse link NW_004955470 12,310,680 12,362,555 RGD:9068941
G En1 engrailed homeobox 1 JBrowse link NW_004955459 10,839,581 10,844,198 RGD:9068941
G Fig4 FIG4 phosphoinositide 5-phosphatase JBrowse link NW_004955411 3,135,752 3,217,891 RGD:9068941
G Hps3 HPS3 biogenesis of lysosomal organelles complex 2 subunit 1 JBrowse link NW_004955448 438,152 465,955 RGD:9068941
G Hps5 HPS5 biogenesis of lysosomal organelles complex 2 subunit 2 JBrowse link NW_004955414 32,992,669 33,028,620 RGD:9068941
G Kit KIT proto-oncogene, receptor tyrosine kinase JBrowse link NW_004955447 16,149,014 16,226,151 RGD:9068941
G Krt76 keratin 76 JBrowse link NW_004955458 74,368 82,778 RGD:9068941
G Lyst lysosomal trafficking regulator JBrowse link NW_004955492 4,161,976 4,371,637 RGD:9068941
G Mysm1 Myb like, SWIRM and MPN domains 1 JBrowse link NW_004955464 1,185,184 1,226,709 RGD:9068941
G Nf1 neurofibromin 1 JBrowse link NW_004955481 6,145,855 6,404,179 RGD:9068941
G Rack1 receptor for activated C kinase 1 JBrowse link NW_004955530 78,488 83,297 RGD:9068941
G Snai2 snail family transcriptional repressor 2 JBrowse link NW_004955454 8,759,860 8,763,603 RGD:9068941
G Sparc secreted protein acidic and cysteine rich JBrowse link NW_004955408 6,100,123 6,122,460 RGD:9068941
G Szt2 SZT2 subunit KICSTOR complex JBrowse link NW_004955537 2,968,839 3,017,863 RGD:9068941
G Th tyrosine hydroxylase JBrowse link NW_004955422 13,943,590 13,951,102 RGD:9068941
G Tyr tyrosinase JBrowse link NW_004955414 4,244,035 4,314,001 RGD:9068941
G Vangl1 VANGL planar cell polarity protein 1 JBrowse link NW_004955435 18,890,995 18,933,258 RGD:9068941
cellular pigment accumulation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Shroom2 shroom family member 2 JBrowse link NW_004955499 8,031,961 8,103,307 RGD:9068941
G Shroom3 shroom family member 3 JBrowse link NW_004955433 1,135,589 1,423,449 RGD:9068941
cellular pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pomc proopiomelanocortin JBrowse link NW_004955469 7,217,233 7,220,401 RGD:9068941
developmental pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2l11 BCL2 like 11 JBrowse link NW_004955470 2,740,682 2,780,225 RGD:9068941
G Dct dopachrome tautomerase JBrowse link NW_004955404 15,359,402 15,395,556 RGD:9068941
G Gna11 G protein subunit alpha 11 JBrowse link NW_004955495 5,286,891 5,302,631 RGD:9068941
G Slc45a2 solute carrier family 45 member 2 JBrowse link NW_004955426 19,498,942 19,530,628 RGD:9068941
G Zeb2 zinc finger E-box binding homeobox 2 JBrowse link NW_004955440 10,755,658 10,881,044 RGD:9068941
endosome to melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ankrd27 ankyrin repeat domain 27 JBrowse link NW_004955468 5,314,779 5,364,925 RGD:9068941
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 JBrowse link NW_004955484 4,430,461 4,511,368 RGD:9068941
G Ap1m1 adaptor related protein complex 1 subunit mu 1 JBrowse link NW_004955524 1,345,125 1,360,869 RGD:9068941
G Ap3d1 adaptor related protein complex 3 subunit delta 1 JBrowse link NW_004955495 5,972,177 6,012,525 RGD:9068941
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 JBrowse link NW_004955555 2,183,752 2,186,154 RGD:9068941
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link NW_004955465 5,910,095 5,943,996 RGD:9068941
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link NW_004955409 7,902,125 7,913,966 RGD:9068941
G Cd63 CD63 molecule JBrowse link NW_004955458 3,362,511 3,363,916 RGD:9068941
G Rab32 RAB32, member RAS oncogene family JBrowse link NW_004955436 14,171,123 14,177,255 RGD:9068941
G Rab38 RAB38, member RAS oncogene family JBrowse link NW_004955414 5,158,860 5,214,108 RGD:9068941
establishment of melanosome localization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rab17 RAB17, member RAS oncogene family JBrowse link NW_004955542 2,751,953 2,759,661 RGD:9068941
G Shroom2 shroom family member 2 JBrowse link NW_004955499 8,031,961 8,103,307 RGD:9068941
eye pigment biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ap3d1 adaptor related protein complex 3 subunit delta 1 JBrowse link NW_004955495 5,972,177 6,012,525 RGD:9068941
G Gpr143 G protein-coupled receptor 143 JBrowse link NW_004955499 7,900,276 7,953,847 RGD:9068941
G Oca2 OCA2 melanosomal transmembrane protein JBrowse link NW_004955533 1,522,878 1,796,673 RGD:9068941
G Tyr tyrosinase JBrowse link NW_004955414 4,244,035 4,314,001 RGD:9068941
eye pigment granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Shroom2 shroom family member 2 JBrowse link NW_004955499 8,031,961 8,103,307 RGD:9068941
eye pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp6ap2 ATPase H+ transporting accessory protein 2 JBrowse link NW_004955565 2,006,154 2,029,921 RGD:9068941
G Lef1 lymphoid enhancer binding factor 1 JBrowse link NW_004955496 1,728,840 1,827,749 RGD:9068941
melanocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2 BCL2 apoptosis regulator JBrowse link NW_004955402 46,911,125 47,084,214 RGD:9068941
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link NW_004955409 7,902,125 7,913,966 RGD:9068941
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 JBrowse link NW_004955475 11,722,514 11,725,067 RGD:9068941
G Edn3 endothelin 3 JBrowse link NW_004955445 215,910 238,153 RGD:9068941
G Ednrb endothelin receptor type B JBrowse link NW_004955404 29,394,253 29,425,358 RGD:9068941
G Gli3 GLI family zinc finger 3 JBrowse link NW_004955460 1,528,457 1,805,584 RGD:9068941
G Hps4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 JBrowse link NW_004955455 1,048,946 1,076,097 RGD:9068941
G Hps6 HPS6 biogenesis of lysosomal organelles complex 2 subunit 3 JBrowse link NW_004955485 8,270,997 8,273,060 RGD:9068941
G Kit KIT proto-oncogene, receptor tyrosine kinase JBrowse link NW_004955447 16,149,014 16,226,151 RGD:9068941
G Lrmda leucine rich melanocyte differentiation associated JBrowse link NW_004955437 15,678,397 16,173,214 RGD:9068941
G Mef2c myocyte enhancer factor 2C JBrowse link NW_004955418 22,537,388 22,701,434 RGD:9068941
G Mitf melanocyte inducing transcription factor JBrowse link NW_004955421 17,948,117 18,157,379 RGD:9068941
G Mreg melanoregulin JBrowse link NW_004955457 9,534 78,617 RGD:9068941
G Myo5a myosin VA JBrowse link NW_004955409 2,409,503 2,530,539 RGD:9068941
G Oca2 OCA2 melanosomal transmembrane protein JBrowse link NW_004955533 1,522,878 1,796,673 RGD:9068941
G Rab27a RAB27A, member RAS oncogene family JBrowse link NW_004955409 588,725 621,874 RGD:9068941
G Slc24a5 solute carrier family 24 member 5 JBrowse link NW_004955409 5,747,624 5,768,122 RGD:9068941
G Sox10 SRY-box 10 JBrowse link NW_004955413 24,313,311 24,323,112 RGD:9068941
G Tyrp1 tyrosinase related protein 1 JBrowse link NW_004955434 15,913,208 15,932,193 RGD:9068941
G Usp13 ubiquitin specific peptidase 13 JBrowse link NW_004955420 8,835,858 8,919,837 RGD:9068941
melanosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hps1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 JBrowse link NW_004955507 4,408,428 4,433,219 RGD:9068941
G Hps4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 JBrowse link NW_004955455 1,048,946 1,076,097 RGD:9068941
G Rab32 RAB32, member RAS oncogene family JBrowse link NW_004955436 14,171,123 14,177,255 RGD:9068941
G Rab38 RAB38, member RAS oncogene family JBrowse link NW_004955414 5,158,860 5,214,108 RGD:9068941
melanosome localization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gpr143 G protein-coupled receptor 143 JBrowse link NW_004955499 7,900,276 7,953,847 RGD:9068941
G Mreg melanoregulin JBrowse link NW_004955457 9,534 78,617 RGD:9068941
G Rab27a RAB27A, member RAS oncogene family JBrowse link NW_004955409 588,725 621,874 RGD:9068941
G Vps33a VPS33A core subunit of CORVET and HOPS complexes JBrowse link NW_004955482 6,333,282 6,352,369 RGD:9068941
G Vps33b VPS33B late endosome and lysosome associated JBrowse link NW_004955416 15,049,849 15,071,108 RGD:9068941
melanosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 JBrowse link NW_004955484 4,430,461 4,511,368 RGD:9068941
G Ap1m1 adaptor related protein complex 1 subunit mu 1 JBrowse link NW_004955524 1,345,125 1,360,869 RGD:9068941
G Ap3b1 adaptor related protein complex 3 subunit beta 1 JBrowse link NW_004955425 22,792,616 23,051,509 RGD:9068941
G Ap3d1 adaptor related protein complex 3 subunit delta 1 JBrowse link NW_004955495 5,972,177 6,012,525 RGD:9068941
G Asip agouti signaling protein JBrowse link NW_004955422 27,021,810 27,150,339 RGD:9068941
G Bloc1s1 biogenesis of lysosomal organelles complex 1 subunit 1 JBrowse link NW_004955458 3,352,442 3,356,224 RGD:9068941
G Bloc1s2 biogenesis of lysosomal organelles complex 1 subunit 2 JBrowse link NW_004955507 6,138,511 6,144,823 RGD:9068941
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 JBrowse link NW_004955555 2,183,752 2,186,154 RGD:9068941
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 JBrowse link NW_004955514 3,698,644 3,699,227 RGD:9068941
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link NW_004955465 5,910,095 5,943,996 RGD:9068941
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link NW_004955409 7,902,125 7,913,966 RGD:9068941
G Dtnbp1 dystrobrevin binding protein 1 JBrowse link NW_004955590 276,143 382,812 RGD:9068941
G Gpr143 G protein-coupled receptor 143 JBrowse link NW_004955499 7,900,276 7,953,847 RGD:9068941
G Kif13a kinesin family member 13A JBrowse link NW_004955483 8,191,514 8,366,645 RGD:9068941
G Lyst lysosomal trafficking regulator JBrowse link NW_004955492 4,161,976 4,371,637 RGD:9068941
G Pmel premelanosome protein JBrowse link NW_004955458 3,544,855 3,555,453 RGD:9068941
G Shroom2 shroom family member 2 JBrowse link NW_004955499 8,031,961 8,103,307 RGD:9068941
G Snapin SNAP associated protein JBrowse link NW_004955545 306,546 308,229 RGD:9068941
G Tyrp1 tyrosinase related protein 1 JBrowse link NW_004955434 15,913,208 15,932,193 RGD:9068941
melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arl6 ADP ribosylation factor like GTPase 6 JBrowse link NW_004955407 360,898 387,563 RGD:9068941
G Asip agouti signaling protein JBrowse link NW_004955422 27,021,810 27,150,339 RGD:9068941
G Bbs2 Bardet-Biedl syndrome 2 JBrowse link NW_004955433 14,266,190 14,321,780 RGD:9068941
G Bbs4 Bardet-Biedl syndrome 4 JBrowse link NW_004955450 4,624,634 4,668,470 RGD:9068941
G Bbs5 Bardet-Biedl syndrome 5 JBrowse link NW_004955449 5,043,034 5,061,806 RGD:9068941
G Bbs7 Bardet-Biedl syndrome 7 JBrowse link NW_004955428 18,682,072 18,724,560 RGD:9068941
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 JBrowse link NW_004955555 2,183,752 2,186,154 RGD:9068941
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link NW_004955465 5,910,095 5,943,996 RGD:9068941
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link NW_004955409 7,902,125 7,913,966 RGD:9068941
G Dctn2 dynactin subunit 2 JBrowse link NW_004955458 5,247,871 5,264,424 RGD:9068941
G Gpr143 G protein-coupled receptor 143 JBrowse link NW_004955499 7,900,276 7,953,847 RGD:9068941
G Mkks McKusick-Kaufman syndrome JBrowse link NW_004955415 20,292,311 20,315,850 RGD:9068941
G Mlph melanophilin JBrowse link NW_004955542 2,769,709 2,807,768 RGD:9068941
G Mreg melanoregulin JBrowse link NW_004955457 9,534 78,617 RGD:9068941
G Myo5a myosin VA JBrowse link NW_004955409 2,409,503 2,530,539 RGD:9068941
G Rab11a RAB11A, member RAS oncogene family JBrowse link NW_004955450 9,638,761 9,656,291 RGD:9068941
G Rab11b RAB11B, member RAS oncogene family JBrowse link NW_004955563 1,008,267 1,017,315 RGD:9068941
G Rab17 RAB17, member RAS oncogene family JBrowse link NW_004955542 2,751,953 2,759,661 RGD:9068941
G Rab1a RAB1A, member RAS oncogene family JBrowse link NW_004955424 19,393,589 19,421,373 RGD:9068941
G Rab27a RAB27A, member RAS oncogene family JBrowse link NW_004955409 588,725 621,874 RGD:9068941
G Rab27b RAB27B, member RAS oncogene family JBrowse link NW_004955402 39,357,500 39,415,530 RGD:9068941
negative regulation of eye pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ihh Indian hedgehog signaling molecule JBrowse link NW_004955453 14,376,665 14,382,536 RGD:9068941
pigment granule aggregation in cell center term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bbs7 Bardet-Biedl syndrome 7 JBrowse link NW_004955428 18,682,072 18,724,560 RGD:9068941
G Mkks McKusick-Kaufman syndrome JBrowse link NW_004955415 20,292,311 20,315,850 RGD:9068941
pigment granule maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd63 CD63 molecule JBrowse link NW_004955458 3,362,511 3,363,916 RGD:9068941
pigment granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2 BCL2 apoptosis regulator JBrowse link NW_004955402 46,911,125 47,084,214 RGD:9068941
pigment granule transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Myo7a myosin VIIA JBrowse link NW_004955414 14,576,356 14,647,500 RGD:9068941
positive regulation of developmental pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bax BCL2 associated X, apoptosis regulator JBrowse link NW_004955559 1,695,960 1,700,246 RGD:9068941
positive regulation of eye pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hps4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 JBrowse link NW_004955455 1,048,946 1,076,097 RGD:9068941
positive regulation of melanocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif 20 JBrowse link NW_004955500 2,688,281 2,850,667 RGD:9068941
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif 9 JBrowse link NW_004955517 1,302,560 1,443,708 RGD:9068941
G Bcl2 BCL2 apoptosis regulator JBrowse link NW_004955402 46,911,125 47,084,214 RGD:9068941
G Kitlg KIT ligand JBrowse link NW_004955405 25,816,137 25,969,006 RGD:9068941
G Zeb2 zinc finger E-box binding homeobox 2 JBrowse link NW_004955440 10,755,658 10,881,044 RGD:9068941
positive regulation of melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdh3 cadherin 3 JBrowse link NW_004955484 7,937,847 7,985,418 RGD:9068941
positive regulation of pigment cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link NW_004955465 5,910,095 5,943,996 RGD:9068941
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link NW_004955409 7,902,125 7,913,966 RGD:9068941
regulation of developmental pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2l11 BCL2 like 11 JBrowse link NW_004955470 2,740,682 2,780,225 RGD:9068941
G Edn3 endothelin 3 JBrowse link NW_004955445 215,910 238,153 RGD:9068941
G Kit KIT proto-oncogene, receptor tyrosine kinase JBrowse link NW_004955447 16,149,014 16,226,151 RGD:9068941
G Vps33a VPS33A core subunit of CORVET and HOPS complexes JBrowse link NW_004955482 6,333,282 6,352,369 RGD:9068941
regulation of eye pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Spns2 sphingolipid transporter 2 JBrowse link NW_004955467 12,405,172 12,441,490 RGD:9068941
regulation of melanocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gna11 G protein subunit alpha 11 JBrowse link NW_004955495 5,286,891 5,302,631 RGD:9068941
regulation of melanosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gpr143 G protein-coupled receptor 143 JBrowse link NW_004955499 7,900,276 7,953,847 RGD:9068941
G Zeb2 zinc finger E-box binding homeobox 2 JBrowse link NW_004955440 10,755,658 10,881,044 RGD:9068941
regulation of melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gpr143 G protein-coupled receptor 143 JBrowse link NW_004955499 7,900,276 7,953,847 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14490
    pigmentation 94
      cellular pigmentation + 49
      developmental pigmentation + 45
      ocellus pigmentation + 0
      pigment accumulation + 12
      pigment metabolic process involved in pigmentation + 4
paths to the root