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ONTOLOGY REPORT - ANNOTATIONS


Term:pigmentation
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Accession:GO:0043473 term browser browse the term
Definition:The accumulation of pigment in an organism, tissue or cell, either by increased deposition or by increased number of cells.
Synonyms:only_in_taxon: NCBITaxon:131567 ! cellular organisms


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pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ARCN1 archain 1 JBrowse link 5 15,141,861 15,171,642 RGD:13508589
RGD:9068941
G ATP7A ATPase copper transporting alpha JBrowse link X 60,203,336 60,356,525 RGD:9068941
G ATRN attractin JBrowse link 24 17,698,238 17,859,810 RGD:13508589
RGD:9068941
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 JBrowse link 1 110,325,351 110,328,226 RGD:9068941
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 JBrowse link X 56,327,104 56,332,608 RGD:9068941
G DRD2 dopamine receptor D2 JBrowse link 5 19,732,842 19,795,241 RGD:13508589
RGD:9068941
G EDA ectodysplasin A JBrowse link X 54,078,694 54,515,535 RGD:9068941
G EDAR ectodysplasin A receptor JBrowse link 10 34,873,311 34,943,140 RGD:9068941
G EN1 engrailed homeobox 1 JBrowse link 19 31,124,325 31,129,538 RGD:9068941
G FIG4 FIG4 phosphoinositide 5-phosphatase JBrowse link 12 66,508,801 66,632,830 RGD:13508589
RGD:9068941
G HPS3 HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 JBrowse link 23 43,939,829 43,979,446 RGD:9068941
G HPS5 HPS5, biogenesis of lysosomal organelles complex 2 subunit 2 JBrowse link 21 40,725,089 40,770,665 RGD:13508589
RGD:9068941
G KIT KIT proto-oncogene receptor tyrosine kinase JBrowse link 13 47,108,442 47,190,935 RGD:13508589
RGD:9068941
G KRT76 keratin 76 JBrowse link 27 2,337,929 2,346,716 RGD:9068941
G LYST lysosomal trafficking regulator JBrowse link 4 4,106,869 4,296,042 RGD:9068941
G MC1R melanocortin 1 receptor JBrowse link 5 63,694,296 63,695,249 RGD:9068941
G MYSM1 Myb like, SWIRM and MPN domains 1 JBrowse link 5 51,037,222 51,079,229 RGD:9068941
G NF1 neurofibromin 1 JBrowse link 9 41,467,460 41,679,388 RGD:9068941
G RACK1 receptor for activated C kinase 1 JBrowse link 11 426,734 431,087 RGD:13508589
RGD:9068941
G SNAI2 snail family transcriptional repressor 2 JBrowse link 29 1,154,132 1,156,653 RGD:9068941
G SPARC secreted protein acidic and cysteine rich JBrowse link 4 57,659,541 57,682,147 RGD:13508589
RGD:9068941
G SZT2 SZT2 subunit of KICSTOR complex JBrowse link 15 16,729,068 16,780,549 RGD:13508589
RGD:9068941
G TH tyrosine hydroxylase JBrowse link 18 46,327,136 46,334,973 RGD:9068941
G TYR tyrosinase JBrowse link 21 10,799,940 10,894,187 RGD:9068941
G VANGL1 VANGL planar cell polarity protein 1 JBrowse link 17 53,174,080 53,227,616 RGD:13508589
RGD:9068941
cellular pigment accumulation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SHROOM2 shroom family member 2 JBrowse link X 6,499,570 6,642,738 RGD:9068941
G SHROOM3 shroom family member 3 JBrowse link 32 1,218,513 1,392,014 RGD:9068941
cellular pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G POMC proopiomelanocortin JBrowse link 17 19,431,396 19,438,247 RGD:9068941
developmental pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCL2L11 BCL2 like 11 JBrowse link 17 35,619,804 35,665,782 RGD:13508589
RGD:9068941
G DCT dopachrome tautomerase JBrowse link 22 45,271,709 45,305,272 RGD:9068941
G SLC45A2 solute carrier family 45 member 2 JBrowse link 4 73,838,684 73,868,222 RGD:9068941
G ZEB2 zinc finger E-box binding homeobox 2 JBrowse link 19 46,419,812 46,541,888 RGD:9068941
endosome to melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ANKRD27 ankyrin repeat domain 27 JBrowse link 1 119,325,132 119,377,266 RGD:9068941
G AP1G1 adaptor related protein complex 1 subunit gamma 1 JBrowse link 5 77,512,865 77,589,136 RGD:13508589
RGD:9068941
G AP1M1 adaptor related protein complex 1 subunit mu 1 JBrowse link 20 46,261,799 46,290,387 RGD:9068941
G AP3D1 adaptor related protein complex 3 subunit delta 1 JBrowse link 20 56,893,479 56,932,460 RGD:9068941
RGD:13508589
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 JBrowse link 1 110,325,351 110,328,226 RGD:9068941
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link 35 7,860,336 7,998,461 RGD:9068941
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link 30 11,861,119 11,949,451 RGD:9068941
G CD63 CD63 molecule JBrowse link 10 126,370 139,301 RGD:13508589
RGD:9068941
G RAB32 RAB32, member RAS oncogene family JBrowse link 1 37,706,809 37,719,044 RGD:9068941
G RAB38 RAB38, member RAS oncogene family JBrowse link 21 11,769,924 11,823,546 RGD:9068941
establishment of melanosome localization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RAB17 RAB17, member RAS oncogene family JBrowse link 25 48,181,557 48,220,729 RGD:9068941
G SHROOM2 shroom family member 2 JBrowse link X 6,499,570 6,642,738 RGD:13508589
RGD:9068941
eye pigment biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AP3D1 adaptor related protein complex 3 subunit delta 1 JBrowse link 20 56,893,479 56,932,460 RGD:9068941
G GPR143 G protein-coupled receptor 143 JBrowse link X 6,438,068 6,479,731 RGD:9068941
G OCA2 OCA2 melanosomal transmembrane protein JBrowse link 3 32,361,825 32,713,631 RGD:9068941
G TYR tyrosinase JBrowse link 21 10,799,940 10,894,187 RGD:9068941
eye pigment granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SHROOM2 shroom family member 2 JBrowse link X 6,499,570 6,642,738 RGD:9068941
eye pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP6AP2 ATPase H+ transporting accessory protein 2 JBrowse link X 35,050,588 35,073,633 RGD:9068941
G LEF1 lymphoid enhancer binding factor 1 JBrowse link 32 28,516,002 28,633,759 RGD:9068941
melanocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCL2 BCL2 apoptosis regulator JBrowse link 1 13,733,849 13,900,653 RGD:9068941
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link 30 11,861,119 11,949,451 RGD:9068941
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 JBrowse link X 56,327,104 56,332,608 RGD:9068941
G EDN3 endothelin 3 JBrowse link 24 44,024,553 44,054,727 RGD:13508589
RGD:9068941
G EDNRB endothelin receptor type B JBrowse link 22 31,415,324 31,438,772 RGD:13508589
RGD:9068941
G GLI3 GLI family zinc finger 3 JBrowse link 18 7,800,817 8,071,531 RGD:13508589
RGD:9068941
G HPS4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 JBrowse link 26 20,131,658 20,157,532 RGD:13508589
RGD:9068941
G HPS6 HPS6, biogenesis of lysosomal organelles complex 2 subunit 3 JBrowse link 28 14,614,434 14,617,138 RGD:9068941
G KIT KIT proto-oncogene receptor tyrosine kinase JBrowse link 13 47,108,442 47,190,935 RGD:13508589
RGD:9068941
G LRMDA leucine rich melanocyte differentiation associated JBrowse link 4 25,610,656 26,636,351 RGD:9068941
G MEF2C myocyte enhancer factor 2C JBrowse link 3 19,778,997 19,948,203 RGD:13508589
RGD:9068941
G MITF melanocyte inducing transcription factor JBrowse link 20 21,772,147 21,873,545 RGD:9068941
G MREG melanoregulin JBrowse link 37 22,958,890 22,999,955 RGD:9068941
G MYO5A myosin VA JBrowse link 30 17,990,521 18,122,160 RGD:9068941
G OCA2 OCA2 melanosomal transmembrane protein JBrowse link 3 32,361,825 32,713,631 RGD:9068941
G RAB27A RAB27A, member RAS oncogene family JBrowse link 30 20,633,576 20,706,240 RGD:13508589
RGD:9068941
G SLC24A5 solute carrier family 24 member 5 JBrowse link 30 14,372,019 14,400,262 RGD:9068941
G SOX10 SRY-box 10 JBrowse link 10 26,680,441 26,690,530 RGD:13508589
RGD:9068941
G TYRP1 tyrosinase related protein 1 JBrowse link 11 33,317,084 33,336,029 RGD:9068941
G USP13 ubiquitin specific peptidase 13 JBrowse link 34 13,059,099 13,175,980 RGD:9068941
melanosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HPS1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 JBrowse link 28 11,547,457 11,572,248 RGD:13508589
RGD:9068941
G HPS4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 JBrowse link 26 20,131,658 20,157,532 RGD:13508589
RGD:9068941
G RAB32 RAB32, member RAS oncogene family JBrowse link 1 37,706,809 37,719,044 RGD:9068941
G RAB38 RAB38, member RAS oncogene family JBrowse link 21 11,769,924 11,823,546 RGD:9068941
G TRAPPC6A trafficking protein particle complex 6A JBrowse link 1 110,328,448 110,339,394 RGD:9068941
melanosome localization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GPR143 G protein-coupled receptor 143 JBrowse link X 6,438,068 6,479,731 RGD:9068941
G MREG melanoregulin JBrowse link 37 22,958,890 22,999,955 RGD:9068941
G RAB27A RAB27A, member RAS oncogene family JBrowse link 30 20,633,576 20,706,240 RGD:9068941
G VPS33A VPS33A core subunit of CORVET and HOPS complexes JBrowse link 26 7,090,669 7,119,913 RGD:9068941
G VPS33B VPS33B late endosome and lysosome associated JBrowse link 3 53,220,199 53,239,738 RGD:9068941
melanosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AP1G1 adaptor related protein complex 1 subunit gamma 1 JBrowse link 5 77,512,865 77,589,136 RGD:9068941
G AP1M1 adaptor related protein complex 1 subunit mu 1 JBrowse link 20 46,261,799 46,290,387 RGD:9068941
G AP3B1 adaptor related protein complex 3 subunit beta 1 JBrowse link 3 28,481,974 28,748,095 RGD:13508589
RGD:9068941
G AP3D1 adaptor related protein complex 3 subunit delta 1 JBrowse link 20 56,893,479 56,932,460 RGD:9068941
G ASIP agouti signaling protein JBrowse link 24 23,338,757 23,393,913 RGD:13508589
RGD:9068941
G BLOC1S1 biogenesis of lysosomal organelles complex 1 subunit 1 JBrowse link 10 116,993 120,244 RGD:9068941
G BLOC1S2 biogenesis of lysosomal organelles complex 1 subunit 2 JBrowse link 28 13,040,016 13,044,364 RGD:9068941
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 JBrowse link 1 110,325,351 110,328,226 RGD:9068941
G BLOC1S4 biogenesis of lysosomal organelles complex 1 subunit 4 JBrowse link 3 58,822,405 58,823,770 RGD:9068941
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link 35 7,860,336 7,998,461 RGD:9068941
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link 30 11,861,119 11,949,451 RGD:9068941
G DTNBP1 dystrobrevin binding protein 1 JBrowse link 35 14,738,025 14,862,609 RGD:9068941
G GPR143 G protein-coupled receptor 143 JBrowse link X 6,438,068 6,479,731 RGD:9068941
G KIF13A kinesin family member 13A JBrowse link 35 16,621,581 16,748,500 RGD:9068941
G LYST lysosomal trafficking regulator JBrowse link 4 4,106,869 4,296,042 RGD:9068941
G PMEL premelanosome protein JBrowse link 10 292,595 327,618 RGD:9068941
G SHROOM2 shroom family member 2 JBrowse link X 6,499,570 6,642,738 RGD:9068941
G SNAPIN SNAP associated protein JBrowse link 7 43,410,554 43,411,929 RGD:9068941
G TYRP1 tyrosinase related protein 1 JBrowse link 11 33,317,084 33,336,029 RGD:9068941
melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ARL6 ADP ribosylation factor like GTPase 6 JBrowse link 33 4,797,944 4,857,566 RGD:9068941
G ASIP agouti signaling protein JBrowse link 24 23,338,757 23,393,913 RGD:13508589
RGD:9068941
G BBS2 Bardet-Biedl syndrome 2 JBrowse link 2 59,650,439 59,705,728 RGD:9068941
G BBS4 Bardet-Biedl syndrome 4 JBrowse link 30 36,058,932 36,109,206 RGD:9068941
G BBS5 Bardet-Biedl syndrome 5 JBrowse link 36 14,206,917 14,233,726 RGD:9068941
G BBS7 Bardet-Biedl syndrome 7 JBrowse link 19 18,280,487 18,319,128 RGD:9068941
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 JBrowse link 1 110,325,351 110,328,226 RGD:9068941
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link 35 7,860,336 7,998,461 RGD:9068941
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link 30 11,861,119 11,949,451 RGD:9068941
G DCTN2 dynactin subunit 2 JBrowse link 10 1,620,702 1,634,385 RGD:13508589
RGD:9068941
G GPR143 G protein-coupled receptor 143 JBrowse link X 6,438,068 6,479,731 RGD:9068941
G MKKS McKusick-Kaufman syndrome JBrowse link 24 11,887,504 11,914,055 RGD:9068941
G MLPH melanophilin JBrowse link 25 48,121,499 48,167,535 RGD:9068941
G MREG melanoregulin JBrowse link 37 22,958,890 22,999,955 RGD:9068941
G MYO5A myosin VA JBrowse link 30 17,990,521 18,122,160 RGD:9068941
G RAB11A RAB11A, member RAS oncogene family JBrowse link 30 30,200,831 30,218,412 RGD:13508589
RGD:9068941
G RAB11B RAB11B, member RAS oncogene family JBrowse link 20 52,955,949 52,966,279 RGD:9068941
RGD:13508589
G RAB17 RAB17, member RAS oncogene family JBrowse link 25 48,181,557 48,220,729 RGD:13508589
RGD:9068941
G RAB1A RAB1A, member RAS oncogene family JBrowse link 10 64,564,351 64,590,654 RGD:13508589
RGD:9068941
G RAB27A RAB27A, member RAS oncogene family JBrowse link 30 20,633,576 20,706,240 RGD:9068941
G RAB27B RAB27B, member RAS oncogene family JBrowse link 1 20,695,100 20,832,745 RGD:9068941
negative regulation of eye pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IHH Indian hedgehog signaling molecule JBrowse link 37 25,616,942 25,622,989 RGD:9068941
pigment granule aggregation in cell center term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BBS7 Bardet-Biedl syndrome 7 JBrowse link 19 18,280,487 18,319,128 RGD:9068941
G MKKS McKusick-Kaufman syndrome JBrowse link 24 11,887,504 11,914,055 RGD:9068941
pigment granule maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CD63 CD63 molecule JBrowse link 10 126,370 139,301 RGD:9068941
pigment granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCL2 BCL2 apoptosis regulator JBrowse link 1 13,733,849 13,900,653 RGD:9068941
pigment granule transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MYO7A myosin VIIA JBrowse link 21 21,539,735 21,624,063 RGD:9068941
positive regulation of developmental pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BAX BCL2 associated X, apoptosis regulator JBrowse link 1 107,423,388 107,426,464 RGD:9068941
positive regulation of eye pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HPS4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 JBrowse link 26 20,131,658 20,157,532 RGD:9068941
positive regulation of melanocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 JBrowse link 27 10,492,587 10,655,681 RGD:9068941
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 JBrowse link 20 26,589,529 26,749,422 RGD:13508589
RGD:9068941
G BCL2 BCL2 apoptosis regulator JBrowse link 1 13,733,849 13,900,653 RGD:9068941
G KITLG KIT ligand JBrowse link 15 29,591,068 29,671,985 RGD:13508589
RGD:9068941
G ZEB2 zinc finger E-box binding homeobox 2 JBrowse link 19 46,419,812 46,541,888 RGD:9068941
positive regulation of melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDH3 cadherin 3 JBrowse link 5 80,864,859 80,912,136 RGD:13508589
RGD:9068941
positive regulation of pigment cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link 35 7,860,336 7,998,461 RGD:9068941
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link 30 11,861,119 11,949,451 RGD:9068941
regulation of developmental pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCL2L11 BCL2 like 11 JBrowse link 17 35,619,804 35,665,782 RGD:13508589
RGD:9068941
G EDN3 endothelin 3 JBrowse link 24 44,024,553 44,054,727 RGD:13508589
RGD:9068941
G KIT KIT proto-oncogene receptor tyrosine kinase JBrowse link 13 47,108,442 47,190,935 RGD:13508589
RGD:9068941
G VPS33A VPS33A core subunit of CORVET and HOPS complexes JBrowse link 26 7,090,669 7,119,913 RGD:9068941
regulation of eye pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SPNS2 sphingolipid transporter 2 JBrowse link 5 30,494,355 30,527,669 RGD:9068941
regulation of melanosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GPR143 G protein-coupled receptor 143 JBrowse link X 6,438,068 6,479,731 RGD:9068941
G ZEB2 zinc finger E-box binding homeobox 2 JBrowse link 19 46,419,812 46,541,888 RGD:9068941
regulation of melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GPR143 G protein-coupled receptor 143 JBrowse link X 6,438,068 6,479,731 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15702
    pigmentation 95
      cellular pigmentation + 50
      developmental pigmentation + 44
      ocellus pigmentation + 0
      pigment accumulation + 12
      pigment metabolic process involved in pigmentation + 4
paths to the root