FTP Download
Chinchilla Research Resource Database
   
Keyword
  

ONTOLOGY REPORT - ANNOTATIONS


Term:pigmentation
go back to main search page
Accession:GO:0043473 term browser browse the term
Definition:The accumulation of pigment in an organism, tissue or cell, either by increased deposition or by increased number of cells.
Synonyms:only_in_taxon: NCBITaxon:131567 ! cellular organisms


show annotations for term's descendants       view all columns           Sort by:
 
pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ARCN1 archain 1 JBrowse link 11 118,572,387 118,603,033 RGD:2290271
G ATP7A ATPase copper transporting alpha JBrowse link X 77,910,656 78,050,395 RGD:2290271
G ATRN attractin JBrowse link 20 3,471,018 3,651,122 RGD:2290271
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 JBrowse link 19 45,178,745 45,202,715 RGD:2290271
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 JBrowse link X 72,301,638 72,307,187 RGD:2290271
G DRD2 dopamine receptor D2 JBrowse link 11 113,409,595 113,475,279 RGD:2290271
G EDA ectodysplasin A JBrowse link X 69,616,067 70,039,472 RGD:2290271
G EDAR ectodysplasin A receptor JBrowse link 2 108,894,471 108,989,372 RGD:2290271
G EN1 engrailed homeobox 1 JBrowse link 2 118,842,171 118,848,183 RGD:2290271
G FIG4 FIG4 phosphoinositide 5-phosphatase JBrowse link 6 109,691,221 109,825,431 RGD:2290271
G HPS3 HPS3 biogenesis of lysosomal organelles complex 2 subunit 1 JBrowse link 3 149,129,584 149,173,196 RGD:2290271
G HPS5 HPS5 biogenesis of lysosomal organelles complex 2 subunit 2 JBrowse link 11 18,278,670 18,322,498 RGD:2290271
G KIT KIT proto-oncogene, receptor tyrosine kinase JBrowse link 4 54,657,928 54,740,715 RGD:2290271
G KRT76 keratin 76 JBrowse link 12 52,768,155 52,777,345 RGD:2290271
G LYST lysosomal trafficking regulator JBrowse link 1 235,661,031 235,883,708 RGD:2290271
G MC1R melanocortin 1 receptor JBrowse link 16 89,917,879 89,920,977 RGD:2290271
G MYSM1 Myb like, SWIRM and MPN domains 1 JBrowse link 1 58,654,739 58,700,091 RGD:2290271
G NF1 neurofibromin 1 JBrowse link 17 31,094,927 31,377,677 RGD:2290271
G RACK1 receptor for activated C kinase 1 JBrowse link 5 181,236,928 181,243,906 RGD:2290271
G SNAI2 snail family transcriptional repressor 2 JBrowse link 8 48,917,677 48,921,440 RGD:2290271
G SPARC secreted protein acidic and cysteine rich JBrowse link 5 151,661,096 151,687,054 RGD:2290271
G SZT2 SZT2 subunit of KICSTOR complex JBrowse link 1 43,389,884 43,454,247 RGD:2290271
G TH tyrosine hydroxylase JBrowse link 11 2,163,929 2,174,081 RGD:2290271
G TYR tyrosinase JBrowse link 11 89,177,565 89,295,759 RGD:2290271
G VANGL1 VANGL planar cell polarity protein 1 JBrowse link 1 115,641,953 115,698,224 RGD:2290271
cellular pigment accumulation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SHROOM2 shroom family member 2 JBrowse link X 9,786,406 9,949,443 RGD:2290271
G SHROOM3 shroom family member 3 JBrowse link 4 76,435,100 76,783,253 RGD:2290271
cellular pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G POMC proopiomelanocortin JBrowse link 2 25,160,853 25,168,851 RGD:2290271
developmental pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCL2L11 BCL2 like 11 JBrowse link 2 111,120,914 111,168,445 RGD:2290271
G DCT dopachrome tautomerase JBrowse link 13 94,437,304 94,549,413 RGD:2290271
G GNA11 G protein subunit alpha 11 JBrowse link 19 3,094,410 3,124,002 RGD:2290271
G SLC45A2 solute carrier family 45 member 2 JBrowse link 5 33,944,616 33,984,675 RGD:2290271
G ZEB2 zinc finger E-box binding homeobox 2 JBrowse link 2 144,384,375 144,520,391 RGD:2290271
endosome to melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ANKRD27 ankyrin repeat domain 27 JBrowse link 19 32,597,001 32,675,215 RGD:2290271
G AP1G1 adaptor related protein complex 1 subunit gamma 1 JBrowse link 16 71,729,000 71,809,073 RGD:2290271
G AP1M1 adaptor related protein complex 1 subunit mu 1 JBrowse link 19 16,197,854 16,235,345 RGD:2290271
G AP3D1 adaptor related protein complex 3 subunit delta 1 JBrowse link 19 2,100,988 2,151,626 RGD:2290271
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 JBrowse link 19 45,178,745 45,202,715 RGD:2290271
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link 6 8,013,567 8,064,414 RGD:2290271
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link 15 45,587,123 45,609,716 RGD:2290271
G CD63 CD63 molecule JBrowse link 12 55,725,443 55,729,673 RGD:2290271
G RAB32 RAB32, member RAS oncogene family JBrowse link 6 146,543,692 146,554,956 RGD:2290271
G RAB38 RAB38, member RAS oncogene family JBrowse link 11 87,809,490 88,175,504 RGD:2290271
establishment of melanosome localization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RAB17 RAB17, member RAS oncogene family JBrowse link 2 237,574,322 237,591,126 RGD:2290271
G SHROOM2 shroom family member 2 JBrowse link X 9,786,406 9,949,443 RGD:2290271
eye pigment biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AP3D1 adaptor related protein complex 3 subunit delta 1 JBrowse link 19 2,100,988 2,151,626 RGD:2290271
G GPR143 G protein-coupled receptor 143 JBrowse link X 9,725,413 9,786,260 RGD:2290271
G OCA2 OCA2 melanosomal transmembrane protein JBrowse link 15 27,719,008 28,099,342 RGD:2290271
G TYR tyrosinase JBrowse link 11 89,177,565 89,295,759 RGD:2290271
eye pigment granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SHROOM2 shroom family member 2 JBrowse link X 9,786,406 9,949,443 RGD:2290271
eye pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP6AP2 ATPase H+ transporting accessory protein 2 JBrowse link X 40,580,964 40,606,637 RGD:2290271
G LEF1 lymphoid enhancer binding factor 1 JBrowse link 4 108,047,545 108,168,956 RGD:2290271
melanocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCL2 BCL2 apoptosis regulator JBrowse link 18 63,123,346 63,320,280 RGD:2290271
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link 15 45,587,123 45,609,716 RGD:2290271
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 JBrowse link X 72,301,638 72,307,187 RGD:2290271
G EDN3 endothelin 3 JBrowse link 20 59,300,415 59,325,992 RGD:2290271
G EDNRB endothelin receptor type B JBrowse link 13 77,895,481 77,975,723 RGD:2290271
G GLI3 GLI family zinc finger 3 JBrowse link 7 41,960,949 42,237,019 RGD:2290271
G HPS4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 JBrowse link 22 26,443,109 26,483,863 RGD:2290271
G HPS6 HPS6 biogenesis of lysosomal organelles complex 2 subunit 3 JBrowse link 10 102,065,367 102,068,038 RGD:2290271
G KIT KIT proto-oncogene, receptor tyrosine kinase JBrowse link 4 54,657,928 54,740,715 RGD:2290271
G LRMDA leucine rich melanocyte differentiation associated JBrowse link 10 75,431,646 76,557,375 RGD:2290271
G MEF2C myocyte enhancer factor 2C JBrowse link 5 88,718,241 88,904,105 RGD:2290271
G MITF melanocyte inducing transcription factor JBrowse link 3 69,739,435 69,968,337 RGD:2290271
G MREG melanoregulin JBrowse link 2 215,939,097 216,013,623 RGD:2290271
G MYO5A myosin VA JBrowse link 15 52,307,283 52,529,050 RGD:2290271
G OCA2 OCA2 melanosomal transmembrane protein JBrowse link 15 27,719,008 28,099,342 RGD:2290271
G RAB27A RAB27A, member RAS oncogene family JBrowse link 15 55,202,966 55,291,338 RGD:2290271
G SLC24A5 solute carrier family 24 member 5 JBrowse link 15 48,120,972 48,142,392 RGD:2290271
G SOX10 SRY-box 10 JBrowse link 22 37,972,312 37,984,532 RGD:2290271
G TYRP1 tyrosinase related protein 1 JBrowse link 9 12,693,375 12,710,266 RGD:2290271
G USP13 ubiquitin specific peptidase 13 JBrowse link 3 179,653,145 179,789,401 RGD:2290271
melanosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HPS1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 JBrowse link 10 98,416,193 98,446,963 RGD:2290271
G HPS4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 JBrowse link 22 26,443,109 26,483,863 RGD:2290271
G RAB32 RAB32, member RAS oncogene family JBrowse link 6 146,543,692 146,554,956 RGD:2290271
G RAB38 RAB38, member RAS oncogene family JBrowse link 11 87,809,490 88,175,504 RGD:2290271
G TRAPPC6A trafficking protein particle complex 6A JBrowse link 19 45,162,928 45,179,266 RGD:2290271
melanosome localization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GPR143 G protein-coupled receptor 143 JBrowse link X 9,725,413 9,786,260 RGD:2290271
G MREG melanoregulin JBrowse link 2 215,939,097 216,013,623 RGD:2290271
G RAB27A RAB27A, member RAS oncogene family JBrowse link 15 55,202,966 55,291,338 RGD:2290271
G VPS33A VPS33A core subunit of CORVET and HOPS complexes JBrowse link 12 122,229,561 122,266,823 RGD:2290271
G VPS33B VPS33B late endosome and lysosome associated JBrowse link 15 90,998,416 91,022,839 RGD:2290271
melanosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AP1G1 adaptor related protein complex 1 subunit gamma 1 JBrowse link 16 71,729,000 71,809,073 RGD:2290271
G AP1M1 adaptor related protein complex 1 subunit mu 1 JBrowse link 19 16,197,854 16,235,345 RGD:2290271
G AP3B1 adaptor related protein complex 3 subunit beta 1 JBrowse link 5 78,002,326 78,294,755 RGD:2290271
G AP3D1 adaptor related protein complex 3 subunit delta 1 JBrowse link 19 2,100,988 2,151,626 RGD:2290271
G ASIP agouti signaling protein JBrowse link 20 34,186,493 34,269,344 RGD:2290271
G BLOC1S1 biogenesis of lysosomal organelles complex 1 subunit 1 JBrowse link 12 55,716,034 55,719,707 RGD:2290271
G BLOC1S2 biogenesis of lysosomal organelles complex 1 subunit 2 JBrowse link 10 100,273,278 100,286,712 RGD:2290271
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 JBrowse link 19 45,178,745 45,202,715 RGD:2290271
G BLOC1S4 biogenesis of lysosomal organelles complex 1 subunit 4 JBrowse link 4 6,716,115 6,717,660 RGD:2290271
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link 6 8,013,567 8,064,414 RGD:2290271
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link 15 45,587,123 45,609,716 RGD:2290271
G DTNBP1 dystrobrevin binding protein 1 JBrowse link 6 15,522,801 15,663,058 RGD:2290271
G GPR143 G protein-coupled receptor 143 JBrowse link X 9,725,413 9,786,260 RGD:2290271
G KIF13A kinesin family member 13A JBrowse link 6 17,759,183 17,987,623 RGD:2290271
G LYST lysosomal trafficking regulator JBrowse link 1 235,661,031 235,883,708 RGD:2290271
G PMEL premelanosome protein JBrowse link 12 55,954,105 55,966,712 RGD:2290271
G SHROOM2 shroom family member 2 JBrowse link X 9,786,406 9,949,443 RGD:2290271
G SNAPIN SNAP associated protein JBrowse link 1 153,658,654 153,661,852 RGD:2290271
G TYRP1 tyrosinase related protein 1 JBrowse link 9 12,693,375 12,710,266 RGD:2290271
melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ARL6 ADP ribosylation factor like GTPase 6 JBrowse link 3 97,762,581 97,812,585 RGD:2290271
G ASIP agouti signaling protein JBrowse link 20 34,186,493 34,269,344 RGD:2290271
G BBS2 Bardet-Biedl syndrome 2 JBrowse link 16 56,470,403 56,520,096 RGD:2290271
G BBS4 Bardet-Biedl syndrome 4 JBrowse link 15 72,686,179 72,738,476 RGD:2290271
G BBS5 Bardet-Biedl syndrome 5 JBrowse link 2 169,479,496 169,506,655 RGD:2290271
G BBS7 Bardet-Biedl syndrome 7 JBrowse link 4 121,824,329 121,870,497 RGD:2290271
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 JBrowse link 19 45,178,745 45,202,715 RGD:2290271
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link 6 8,013,567 8,064,414 RGD:2290271
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link 15 45,587,123 45,609,716 RGD:2290271
G DCTN2 dynactin subunit 2 JBrowse link 12 57,530,050 57,547,331 RGD:2290271
G GPR143 G protein-coupled receptor 143 JBrowse link X 9,725,413 9,786,260 RGD:2290271
G MKKS McKusick-Kaufman syndrome JBrowse link 20 10,404,780 10,434,239 RGD:2290271
G MLPH melanophilin JBrowse link 2 237,486,410 237,555,318 RGD:2290271
G MREG melanoregulin JBrowse link 2 215,939,097 216,013,623 RGD:2290271
G MYO5A myosin VA JBrowse link 15 52,307,283 52,529,050 RGD:2290271
G RAB11A RAB11A, member RAS oncogene family JBrowse link 15 65,869,459 65,891,991 RGD:2290271
G RAB11B RAB11B, member RAS oncogene family JBrowse link 19 8,390,321 8,404,434 RGD:2290271
G RAB17 RAB17, member RAS oncogene family JBrowse link 2 237,574,322 237,591,126 RGD:2290271
G RAB1A RAB1A, member RAS oncogene family JBrowse link 2 65,086,854 65,130,301 RGD:2290271
G RAB27A RAB27A, member RAS oncogene family JBrowse link 15 55,202,966 55,291,338 RGD:2290271
G RAB27B RAB27B, member RAS oncogene family JBrowse link 18 54,717,842 54,895,516 RGD:2290271
negative regulation of eye pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IHH Indian hedgehog signaling molecule JBrowse link 2 219,054,420 219,060,516 RGD:2290271
pigment granule aggregation in cell center term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BBS7 Bardet-Biedl syndrome 7 JBrowse link 4 121,824,329 121,870,497 RGD:2290271
G MKKS McKusick-Kaufman syndrome JBrowse link 20 10,404,780 10,434,239 RGD:2290271
pigment granule maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CD63 CD63 molecule JBrowse link 12 55,725,443 55,729,673 RGD:2290271
pigment granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCL2 BCL2 apoptosis regulator JBrowse link 18 63,123,346 63,320,280 RGD:2290271
pigment granule transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MYO7A myosin VIIA JBrowse link 11 77,128,192 77,215,241 RGD:2290271
positive regulation of developmental pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BAX BCL2 associated X, apoptosis regulator JBrowse link 19 48,954,825 48,961,798 RGD:2290271
positive regulation of eye pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HPS4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 JBrowse link 22 26,443,109 26,483,863 RGD:2290271
positive regulation of melanocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 JBrowse link 12 43,352,843 43,551,971 RGD:2290271
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 JBrowse link 3 64,515,654 64,688,000 RGD:2290271
G BCL2 BCL2 apoptosis regulator JBrowse link 18 63,123,346 63,320,280 RGD:2290271
G KITLG KIT ligand JBrowse link 12 88,492,793 88,580,473 RGD:2290271
G ZEB2 zinc finger E-box binding homeobox 2 JBrowse link 2 144,384,375 144,520,391 RGD:2290271
positive regulation of melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDH3 cadherin 3 JBrowse link 16 68,644,836 68,727,573 RGD:2290271
positive regulation of pigment cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link 6 8,013,567 8,064,414 RGD:2290271
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link 15 45,587,123 45,609,716 RGD:2290271
regulation of developmental pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCL2L11 BCL2 like 11 JBrowse link 2 111,120,914 111,168,445 RGD:2290271
G EDN3 endothelin 3 JBrowse link 20 59,300,415 59,325,992 RGD:2290271
G KIT KIT proto-oncogene, receptor tyrosine kinase JBrowse link 4 54,657,928 54,740,715 RGD:2290271
G VPS33A VPS33A core subunit of CORVET and HOPS complexes JBrowse link 12 122,229,561 122,266,823 RGD:2290271
regulation of eye pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SPNS2 sphingolipid transporter 2 JBrowse link 17 4,498,843 4,539,037 RGD:2290271
regulation of melanocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GNA11 G protein subunit alpha 11 JBrowse link 19 3,094,410 3,124,002 RGD:2290271
regulation of melanosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GPR143 G protein-coupled receptor 143 JBrowse link X 9,725,413 9,786,260 RGD:2290271
G ZEB2 zinc finger E-box binding homeobox 2 JBrowse link 2 144,384,375 144,520,391 RGD:2290271
regulation of melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GPR143 G protein-coupled receptor 143 JBrowse link X 9,725,413 9,786,260 RGD:2290271

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17650
    pigmentation 96
      cellular pigmentation + 50
      developmental pigmentation + 45
      ocellus pigmentation + 0
      pigment accumulation + 12
      pigment metabolic process involved in pigmentation + 4
paths to the root