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ONTOLOGY REPORT - ANNOTATIONS


Term:pigmentation
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Accession:GO:0043473 term browser browse the term
Definition:The accumulation of pigment in an organism, tissue or cell, either by increased deposition or by increased number of cells.
Synonyms:only_in_taxon: NCBITaxon:131567 ! cellular organisms


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pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arcn1 archain 1 JBrowse link NW_004936542 3,605,553 3,634,889 RGD:9068941
G Atp7a ATPase copper transporting alpha JBrowse link NW_004936683 2,874,022 2,936,214 RGD:9068941
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 JBrowse link NW_004936706 1,702,154 1,704,366 RGD:9068941
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 JBrowse link NW_004936762 1,387,354 1,392,955 RGD:9068941
G Drd2 dopamine receptor D2 JBrowse link NW_004936612 1,094,686 1,154,149 RGD:9068941
G Edar ectodysplasin A receptor JBrowse link NW_004936829 429,667 458,943 RGD:9068941
G En1 engrailed homeobox 1 JBrowse link NW_004936469 51,439,944 51,451,194 RGD:9068941
G Fig4 FIG4 phosphoinositide 5-phosphatase JBrowse link NW_004936564 5,736,908 5,842,210 RGD:9068941
G Hps3 HPS3 biogenesis of lysosomal organelles complex 2 subunit 1 JBrowse link NW_004936519 6,470,077 6,530,897 RGD:9068941
G Hps5 HPS5 biogenesis of lysosomal organelles complex 2 subunit 2 JBrowse link NW_004936528 940,372 980,867 RGD:9068941
G Kit KIT proto-oncogene, receptor tyrosine kinase JBrowse link NW_004936482 17,162,854 17,238,319 RGD:9068941
G LOC101956136 ectodysplasin-A JBrowse link NW_004936777 1,545,293 1,561,109 RGD:9068941
G Lyst lysosomal trafficking regulator JBrowse link NW_004936484 16,750,976 16,915,999 RGD:9068941
G Mc1r melanocortin 1 receptor JBrowse link NW_004936641 193,885 198,730 RGD:9068941
G Mysm1 Myb like, SWIRM and MPN domains 1 JBrowse link NW_004936522 3,105,018 3,143,215 RGD:9068941
G Nf1 neurofibromin 1 JBrowse link NW_004936538 3,394,623 3,596,025 RGD:9068941
G Rack1 receptor for activated C kinase 1 JBrowse link NW_004936826 748,256 753,460 RGD:9068941
G Snai2 snail family transcriptional repressor 2 JBrowse link NW_004936590 3,813,916 3,817,642 RGD:9068941
G Sparc secreted protein acidic and cysteine rich JBrowse link NW_004936515 11,026,156 11,046,812 RGD:9068941
G Szt2 SZT2 subunit KICSTOR complex JBrowse link NW_004936474 24,788,175 24,837,471 RGD:9068941
G Th tyrosine hydroxylase JBrowse link NW_004936794 478,651 486,887 RGD:9068941
G Tyr tyrosinase JBrowse link NW_004936736 421,623 519,085 RGD:9068941
G Vangl1 VANGL planar cell polarity protein 1 JBrowse link NW_004936627 942,570 992,081 RGD:9068941
cellular pigment accumulation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Shroom2 shroom family member 2 JBrowse link NW_004936644 42,620 127,481 RGD:9068941
G Shroom3 shroom family member 3 JBrowse link NW_004936676 533,654 703,549 RGD:9068941
cellular pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pomc proopiomelanocortin JBrowse link NW_004936493 7,060,747 7,065,276 RGD:9068941
developmental pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2l11 BCL2 like 11 JBrowse link NW_004936783 15,493 50,959 RGD:9068941
G Dct dopachrome tautomerase JBrowse link NW_004936472 15,074,947 15,110,427 RGD:9068941
G Gna11 G protein subunit alpha 11 JBrowse link NW_004936588 1,770,777 1,789,143 RGD:9068941
G Slc45a2 solute carrier family 45 member 2 JBrowse link NW_004936518 7,094,949 7,139,961 RGD:9068941
G Zeb2 zinc finger E-box binding homeobox 2 JBrowse link NW_004936469 32,240,730 32,372,413 RGD:9068941
endosome to melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ankrd27 ankyrin repeat domain 27 JBrowse link NW_004936570 3,044,565 3,097,692 RGD:9068941
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 JBrowse link NW_004936475 21,983,248 22,063,133 RGD:9068941
G Ap1m1 adaptor related protein complex 1 subunit mu 1 JBrowse link NW_004936596 4,322,032 4,347,392 RGD:9068941
G Ap3d1 adaptor related protein complex 3 subunit delta 1 JBrowse link NW_004936588 1,223,646 1,262,577 RGD:9068941
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 JBrowse link NW_004936706 1,702,154 1,704,366 RGD:9068941
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link NW_004936534 4,550,592 4,584,482 RGD:9068941
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link NW_004936471 8,209,091 8,226,249 RGD:9068941
G Cd63 CD63 molecule JBrowse link NW_004936646 196,002 199,177 RGD:9068941
G Rab32 RAB32, member RAS oncogene family JBrowse link NW_004936489 35,620 51,809 RGD:9068941
G Rab38 RAB38, member RAS oncogene family JBrowse link NW_004936736 1,304,290 1,360,412 RGD:9068941
establishment of melanosome localization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rab17 RAB17, member RAS oncogene family JBrowse link NW_004936525 748,851 765,636 RGD:9068941
G Shroom2 shroom family member 2 JBrowse link NW_004936644 42,620 127,481 RGD:9068941
eye pigment biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ap3d1 adaptor related protein complex 3 subunit delta 1 JBrowse link NW_004936588 1,223,646 1,262,577 RGD:9068941
G Gpr143 G protein-coupled receptor 143 JBrowse link NW_004936644 196,344 236,659 RGD:9068941
G Oca2 OCA2 melanosomal transmembrane protein JBrowse link NW_004936471 38,612,450 38,952,150 RGD:9068941
G Tyr tyrosinase JBrowse link NW_004936736 421,623 519,085 RGD:9068941
eye pigment granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Shroom2 shroom family member 2 JBrowse link NW_004936644 42,620 127,481 RGD:9068941
eye pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp6ap2 ATPase H+ transporting accessory protein 2 JBrowse link NW_004936502 7,206,226 7,232,798 RGD:9068941
G Lef1 lymphoid enhancer binding factor 1 JBrowse link NW_004936818 453,635 569,194 RGD:9068941
melanocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2 BCL2 apoptosis regulator JBrowse link NW_004936497 2,209,136 2,373,580 RGD:9068941
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link NW_004936471 8,209,091 8,226,249 RGD:9068941
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 JBrowse link NW_004936762 1,387,354 1,392,955 RGD:9068941
G Edn3 endothelin 3 JBrowse link NW_004936530 1,744,216 1,766,602 RGD:9068941
G Ednrb endothelin receptor type B JBrowse link NW_004936511 3,446,864 3,478,434 RGD:9068941
G Gli3 GLI family zinc finger 3 JBrowse link NW_004936478 17,129,922 17,403,630 RGD:9068941
G Hps4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 JBrowse link NW_004936657 1,075,300 1,104,328 RGD:9068941
G Hps6 HPS6 biogenesis of lysosomal organelles complex 2 subunit 3 JBrowse link NW_004936600 3,754,324 3,757,048 RGD:9068941
G Kit KIT proto-oncogene, receptor tyrosine kinase JBrowse link NW_004936482 17,162,854 17,238,319 RGD:9068941
G Lrmda leucine rich melanocyte differentiation associated JBrowse link NW_004936521 2,959,770 3,637,431 RGD:9068941
G Mef2c myocyte enhancer factor 2C JBrowse link NW_004936469 7,060,480 7,225,497 RGD:9068941
G Mitf melanocyte inducing transcription factor JBrowse link NW_004936603 1,682,411 1,858,295 RGD:9068941
G Mreg melanoregulin JBrowse link NW_004936586 1,203,520 1,261,341 RGD:9068941
G Myo5a myosin VA JBrowse link NW_004936471 14,105,832 14,257,386 RGD:9068941
G Oca2 OCA2 melanosomal transmembrane protein JBrowse link NW_004936471 38,612,450 38,952,150 RGD:9068941
G Rab27a RAB27A, member RAS oncogene family JBrowse link NW_004936471 16,738,204 16,815,561 RGD:9068941
G Slc24a5 solute carrier family 24 member 5 JBrowse link NW_004936471 10,470,078 10,492,334 RGD:9068941
G Sox10 SRY-box 10 JBrowse link NW_004936492 3,173,770 3,183,423 RGD:9068941
G Tyrp1 tyrosinase related protein 1 JBrowse link NW_004936539 6,537,448 6,555,440 RGD:9068941
G Usp13 ubiquitin specific peptidase 13 JBrowse link NW_004936566 3,416,468 3,522,127 RGD:9068941
melanosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hps1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 JBrowse link NW_004936636 1,407,666 1,430,683 RGD:9068941
G Hps4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 JBrowse link NW_004936657 1,075,300 1,104,328 RGD:9068941
G Rab32 RAB32, member RAS oncogene family JBrowse link NW_004936489 35,620 51,809 RGD:9068941
G Rab38 RAB38, member RAS oncogene family JBrowse link NW_004936736 1,304,290 1,360,412 RGD:9068941
G Trappc6a trafficking protein particle complex 6A JBrowse link NW_004936706 1,694,050 1,701,746 RGD:9068941
melanosome localization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gpr143 G protein-coupled receptor 143 JBrowse link NW_004936644 196,344 236,659 RGD:9068941
G Mreg melanoregulin JBrowse link NW_004936586 1,203,520 1,261,341 RGD:9068941
G Rab27a RAB27A, member RAS oncogene family JBrowse link NW_004936471 16,738,204 16,815,561 RGD:9068941
G Vps33a VPS33A core subunit of CORVET and HOPS complexes JBrowse link NW_004936558 2,227,305 2,257,725 RGD:9068941
G Vps33b VPS33B late endosome and lysosome associated JBrowse link NW_004936483 16,007,448 16,031,353 RGD:9068941
melanosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 JBrowse link NW_004936475 21,983,248 22,063,133 RGD:9068941
G Ap1m1 adaptor related protein complex 1 subunit mu 1 JBrowse link NW_004936596 4,322,032 4,347,392 RGD:9068941
G Ap3b1 adaptor related protein complex 3 subunit beta 1 JBrowse link NW_004936549 5,964,240 6,205,245 RGD:9068941
G Ap3d1 adaptor related protein complex 3 subunit delta 1 JBrowse link NW_004936588 1,223,646 1,262,577 RGD:9068941
G Asip agouti signaling protein JBrowse link NW_004936561 6,341,667 6,346,440 RGD:9068941
G Bloc1s1 biogenesis of lysosomal organelles complex 1 subunit 1 JBrowse link NW_004936646 186,422 190,870 RGD:9068941
G Bloc1s2 biogenesis of lysosomal organelles complex 1 subunit 2 JBrowse link NW_004939661 2,128 6,384 RGD:9068941
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 JBrowse link NW_004936706 1,702,154 1,704,366 RGD:9068941
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 JBrowse link NW_004936477 18,618,330 18,619,512 RGD:9068941
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link NW_004936534 4,550,592 4,584,482 RGD:9068941
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link NW_004936471 8,209,091 8,226,249 RGD:9068941
G Dtnbp1 dystrobrevin binding protein 1 JBrowse link NW_004936552 1,787,687 1,926,516 RGD:9068941
G Gpr143 G protein-coupled receptor 143 JBrowse link NW_004936644 196,344 236,659 RGD:9068941
G Kif13a kinesin family member 13A JBrowse link NW_004936552 3,612,104 3,723,275 RGD:9068941
G Lyst lysosomal trafficking regulator JBrowse link NW_004936484 16,750,976 16,915,999 RGD:9068941
G Pmel premelanosome protein JBrowse link NW_004936646 368,064 379,085 RGD:9068941
G Shroom2 shroom family member 2 JBrowse link NW_004936644 42,620 127,481 RGD:9068941
G Snapin SNAP associated protein JBrowse link NW_004936580 3,449,585 3,464,709 RGD:9068941
G Tyrp1 tyrosinase related protein 1 JBrowse link NW_004936539 6,537,448 6,555,440 RGD:9068941
melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arl6 ADP ribosylation factor like GTPase 6 JBrowse link NW_004936666 3,077,006 3,102,469 RGD:9068941
G Asip agouti signaling protein JBrowse link NW_004936561 6,341,667 6,346,440 RGD:9068941
G Bbs2 Bardet-Biedl syndrome 2 JBrowse link NW_004936475 8,785,914 8,810,490 RGD:9068941
G Bbs4 Bardet-Biedl syndrome 4 JBrowse link NW_004936471 31,962,500 32,019,516 RGD:9068941
G Bbs5 Bardet-Biedl syndrome 5 JBrowse link NW_004936509 25,263 45,113 RGD:9068941
G Bbs7 Bardet-Biedl syndrome 7 JBrowse link NW_004936662 1,081,237 1,116,719 RGD:9068941
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 JBrowse link NW_004936706 1,702,154 1,704,366 RGD:9068941
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link NW_004936534 4,550,592 4,584,482 RGD:9068941
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link NW_004936471 8,209,091 8,226,249 RGD:9068941
G Dctn2 dynactin subunit 2 JBrowse link NW_004936646 1,678,678 1,695,142 RGD:9068941
G Gpr143 G protein-coupled receptor 143 JBrowse link NW_004936644 196,344 236,659 RGD:9068941
G Mkks McKusick-Kaufman syndrome JBrowse link NW_004936485 9,089,118 9,114,396 RGD:9068941
G Mlph melanophilin JBrowse link NW_004936525 776,102 821,067 RGD:9068941
G Mreg melanoregulin JBrowse link NW_004936586 1,203,520 1,261,341 RGD:9068941
G Myo5a myosin VA JBrowse link NW_004936471 14,105,832 14,257,386 RGD:9068941
G Rab11a RAB11A, member RAS oncogene family JBrowse link NW_004936471 26,089,216 26,111,245 RGD:9068941
G Rab11b RAB11B, member RAS oncogene family JBrowse link NW_004936588 5,198,659 5,210,430 RGD:9068941
G Rab17 RAB17, member RAS oncogene family JBrowse link NW_004936525 748,851 765,636 RGD:9068941
G Rab1a RAB1A, member RAS oncogene family JBrowse link NW_004936491 9,858,645 9,891,674 RGD:9068941
G Rab27a RAB27A, member RAS oncogene family JBrowse link NW_004936471 16,738,204 16,815,561 RGD:9068941
G Rab27b RAB27B, member RAS oncogene family JBrowse link NW_004936497 9,039,552 9,176,182 RGD:9068941
negative regulation of eye pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ihh Indian hedgehog signaling molecule JBrowse link NW_004936569 1,474,693 1,480,562 RGD:9068941
pigment granule aggregation in cell center term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bbs7 Bardet-Biedl syndrome 7 JBrowse link NW_004936662 1,081,237 1,116,719 RGD:9068941
G Mkks McKusick-Kaufman syndrome JBrowse link NW_004936485 9,089,118 9,114,396 RGD:9068941
pigment granule maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd63 CD63 molecule JBrowse link NW_004936646 196,002 199,177 RGD:9068941
pigment granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2 BCL2 apoptosis regulator JBrowse link NW_004936497 2,209,136 2,373,580 RGD:9068941
pigment granule transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Myo7a myosin VIIA JBrowse link NW_004936498 5,758,572 5,824,526 RGD:9068941
positive regulation of developmental pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bax BCL2 associated X, apoptosis regulator JBrowse link NW_004936664 2,968,103 2,973,652 RGD:9068941
positive regulation of eye pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hps4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 JBrowse link NW_004936657 1,075,300 1,104,328 RGD:9068941
positive regulation of melanocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif 20 JBrowse link NW_004936512 1,942,902 2,088,122 RGD:9068941
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif 9 JBrowse link NW_004936637 1,787,987 1,946,250 RGD:9068941
G Bcl2 BCL2 apoptosis regulator JBrowse link NW_004936497 2,209,136 2,373,580 RGD:9068941
G Kitlg KIT ligand JBrowse link NW_004936507 5,566,144 5,650,412 RGD:9068941
G Zeb2 zinc finger E-box binding homeobox 2 JBrowse link NW_004936469 32,240,730 32,372,413 RGD:9068941
positive regulation of melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdh3 cadherin 3 JBrowse link NW_004936475 18,908,031 18,954,402 RGD:9068941
positive regulation of pigment cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link NW_004936534 4,550,592 4,584,482 RGD:9068941
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link NW_004936471 8,209,091 8,226,249 RGD:9068941
regulation of developmental pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2l11 BCL2 like 11 JBrowse link NW_004936783 15,493 50,959 RGD:9068941
G Edn3 endothelin 3 JBrowse link NW_004936530 1,744,216 1,766,602 RGD:9068941
G Kit KIT proto-oncogene, receptor tyrosine kinase JBrowse link NW_004936482 17,162,854 17,238,319 RGD:9068941
G Vps33a VPS33A core subunit of CORVET and HOPS complexes JBrowse link NW_004936558 2,227,305 2,257,725 RGD:9068941
regulation of eye pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Spns2 sphingolipid transporter 2 JBrowse link NW_004936677 1,058,601 1,093,233 RGD:9068941
regulation of melanocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gna11 G protein subunit alpha 11 JBrowse link NW_004936588 1,770,777 1,789,143 RGD:9068941
regulation of melanosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gpr143 G protein-coupled receptor 143 JBrowse link NW_004936644 196,344 236,659 RGD:9068941
G Zeb2 zinc finger E-box binding homeobox 2 JBrowse link NW_004936469 32,240,730 32,372,413 RGD:9068941
regulation of melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gpr143 G protein-coupled receptor 143 JBrowse link NW_004936644 196,344 236,659 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14762
    pigmentation 94
      cellular pigmentation + 50
      developmental pigmentation + 45
      ocellus pigmentation + 0
      pigment accumulation + 12
      pigment metabolic process involved in pigmentation + 4
paths to the root