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ONTOLOGY REPORT - ANNOTATIONS


Term:histone exchange
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Accession:GO:0043486 term browser browse the term
Definition:The replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits.
Comment:Note that this term also includes the exchange of sperm-specific histones or protamines with histones, occurring during spermatogenesis and fertilization.
Synonyms:exact_synonym: histone replacement
 related_synonym: histone chaperone


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histone exchange term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actr6 actin related protein 6 JBrowse link 7 30,377,369 30,397,922 RGD:13792537
G Anp32e acidic nuclear phosphoprotein 32 family member E JBrowse link 2 198,040,573 198,057,005 RGD:1624291
RGD:13792537
RGD:1600115
G Dmap1 DNA methyltransferase 1-associated protein 1 JBrowse link 5 136,533,791 136,541,795 RGD:13792537
G Nasp nuclear autoantigenic sperm protein JBrowse link 5 135,446,485 135,472,113 RGD:1624291
RGD:1600115
G Ptma prothymosin alpha JBrowse link 9 93,545,396 93,549,436 RGD:1624291
G Rnf8 ring finger protein 8 JBrowse link 20 8,285,380 8,309,858 RGD:1624291
RGD:1600115
G Spty2d1 SPT2 chromatin protein domain containing 1 JBrowse link 1 103,115,280 103,129,438 RGD:1624291
RGD:13792537
G Srcap Snf2-related CREBBP activator protein JBrowse link 1 198,957,764 199,007,576 RGD:13792537
G Vps72 vacuolar protein sorting 72 homolog JBrowse link 2 196,277,961 196,289,549 RGD:1624291
RGD:13792537
G Znhit1 zinc finger, HIT-type containing 1 JBrowse link 12 22,726,643 22,732,917 RGD:13792537
CENP-A containing nucleosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cenpp centromere protein P JBrowse link 17 15,429,526 15,603,197 RGD:1600115
G Hjurp Holliday junction recognition protein JBrowse link 9 95,347,739 95,362,228 RGD:1624291
G Itgb3bp integrin subunit beta 3 binding protein JBrowse link 5 118,476,410 118,541,928 RGD:1600115
G Mis18a MIS18 kinetochore protein A JBrowse link 11 30,880,231 30,893,262 RGD:1624291
RGD:13792537
G Nasp nuclear autoantigenic sperm protein JBrowse link 5 135,446,485 135,472,113 RGD:13792537
G Oip5 Opa interacting protein 5 JBrowse link 3 111,413,662 111,422,320 RGD:13792537
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chd5 chromodomain helicase DNA binding protein 5 JBrowse link 5 169,519,212 169,572,059 RGD:1624291
RGD:1600115
G Fshr follicle stimulating hormone receptor JBrowse link 6 12,796,383 12,997,817 RGD:1624291
G H2bc1 H2B clustered histone 1 JBrowse link 17 43,423,111 43,423,580 RGD:1624291
RGD:1600115
G Piwil1 piwi-like RNA-mediated gene silencing 1 JBrowse link 12 31,608,641 31,629,961 RGD:1624291
G Psme4 proteasome activator subunit 4 JBrowse link 14 115,166,165 115,269,041 RGD:1624291
RGD:13792537
G Rnf8 ring finger protein 8 JBrowse link 20 8,285,380 8,309,858 RGD:1624291
RGD:1600115
G Sycp3 synaptonemal complex protein 3 JBrowse link 7 29,029,887 29,044,344 RGD:1624291
G Tnp1 transition protein 1 JBrowse link 9 80,294,837 80,295,446 RGD:1600115
RGD:1624291
G Tnp2 transition protein 2 JBrowse link 10 4,953,898 4,954,626 RGD:1600115
RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19439
    cellular process 18178
      cellular component organization or biogenesis 6367
        cellular component organization 6145
          chromatin organization 801
            nucleosome organization 152
              histone exchange 23
                CENP-A containing nucleosome assembly + 6
                fertilization, exchange of chromosomal proteins 0
                negative regulation of histone exchange + 0
                positive regulation of histone exchange + 0
                regulation of histone exchange + 0
                spermatogenesis, exchange of chromosomal proteins 9
Path 2
Term Annotations click to browse term
  biological_process 19439
    cellular process 18178
      cellular component organization or biogenesis 6367
        cellular component organization 6145
          organelle organization 3857
            chromosome organization 1198
              chromatin organization 801
                chromatin remodeling 166
                  ATP-dependent chromatin remodeling 46
                    histone exchange 23
                      CENP-A containing nucleosome assembly + 6
                      fertilization, exchange of chromosomal proteins 0
                      negative regulation of histone exchange + 0
                      positive regulation of histone exchange + 0
                      regulation of histone exchange + 0
                      spermatogenesis, exchange of chromosomal proteins 9
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.