ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of RNA stability
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Accession:GO:0043487 term browser browse the term
Definition:Any process that modulates the propensity of RNA molecules to degradation. Includes processes that both stabilize and destabilize RNAs.


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regulation of RNA stability term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nlrp5 NLR family, pyrin domain containing 5 JBrowse link 1 71,452,184 71,490,915 RGD:1624291
G Smg6 SMG6 nonsense mediated mRNA decay factor JBrowse link 10
10
61,526,024
61,771,912
61,542,583
62,007,030
RGD:13792537
3'-UTR-mediated mRNA destabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 JBrowse link 1 255,660,165 255,842,671 RGD:1624291
RGD:1600115
G Dhx36 DEAH-box helicase 36 JBrowse link 2 152,785,844 152,824,549 RGD:1600115
RGD:1624291
G Hnrnpd heterogeneous nuclear ribonucleoprotein D JBrowse link 14 11,256,163 11,274,684 RGD:10042974
G Khsrp KH-type splicing regulatory protein JBrowse link 9 10,013,795 10,023,670 RGD:1600115
RGD:1624291
G LOC100911319 zinc finger protein 36, C3H1 type-like 2-like JBrowse link 7 2,350,068 2,354,108 RGD:13792537
G Mov10 Mov10 RISC complex RNA helicase JBrowse link 2 207,277,088 207,301,245 RGD:1600115
RGD:1624291
G Plekhn1 pleckstrin homology domain containing N1 JBrowse link 5 173,646,055 173,654,140 RGD:1600115
RGD:1624291
G Qk quaking JBrowse link 1 50,983,647 51,050,692 RGD:1624291
G Rbm24 RNA binding motif protein 24 JBrowse link 17 18,671,037 18,682,876 RGD:1624291
G Rc3h1 ring finger and CCCH-type domains 1 JBrowse link 13 78,723,028 78,794,663 RGD:1624291
G Trim71 tripartite motif containing 71 JBrowse link 8 122,553,015 122,604,787 RGD:1624291
RGD:1600115
G Upf1 UPF1, RNA helicase and ATPase JBrowse link 16 20,824,888 20,845,632 RGD:1600115
RGD:1624291
G Zc3h12a zinc finger CCCH type containing 12A JBrowse link 5 143,111,342 143,120,131 RGD:1624291
RGD:1600115
G Zc3h12d zinc finger CCCH type containing 12D JBrowse link 1 1,937,620 1,972,919 RGD:1624291
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1600115
RGD:13792537
RGD:1624291
G Zfp36l1 zinc finger protein 36, C3H type-like 1 JBrowse link 6 103,308,032 103,313,074 RGD:1600115
RGD:13792537
RGD:1624291
G Zfp36l2 zinc finger protein 36, C3H type-like 2 JBrowse link 6 7,417,416 7,423,447 RGD:1624291
RGD:13792537
G Zfp36l3 zinc finger protein 36, C3H type-like 3 JBrowse link X 73,474,894 73,478,223 RGD:13792537
3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Angel2 angel homolog 2 JBrowse link 13 109,505,021 109,520,976 RGD:1624291
RGD:1600115
G Boll boule homolog, RNA binding protein JBrowse link 9 61,836,517 61,975,640 RGD:13792537
G Dazl deleted in azoospermia-like JBrowse link 9 12,633,983 12,651,017 RGD:13792537
G Elavl1 ELAV like RNA binding protein 1 JBrowse link 12 2,461,502 2,502,432 RGD:1600115
RGD:1624291
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 RGD:1624291
G Hnrnpc heterogeneous nuclear ribonucleoprotein C JBrowse link 15 28,486,605 28,517,353 RGD:1624291
G LOC108348134 protein boule-like JBrowse link 9 64,447,890 64,573,812 RGD:13792537
G LOC681410 hypothetical protein LOC681410 JBrowse link 17 6,909,166 6,912,145 RGD:1600115
G Mapkapk2 mitogen-activated protein kinase-activated protein kinase 2 JBrowse link 13 47,785,157 47,871,684 RGD:1624291
RGD:1600115
G Myd88 MYD88, innate immune signal transduction adaptor JBrowse link 8 128,022,512 128,027,462 RGD:1624291
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link 7 12,663,965 12,673,723 RGD:10045987
G Rbm10 RNA binding motif protein 10 JBrowse link X 1,754,869 1,786,973 RGD:1624291
RGD:1600115
G Rbm38 RNA binding motif protein 38 JBrowse link 3 171,037,891 171,050,500 RGD:1624291
RGD:13792537
G Tardbp TAR DNA binding protein JBrowse link 5 165,432,089 165,442,232 RGD:1624291
RGD:13792537
G Tirap TIR domain containing adaptor protein JBrowse link 8 36,382,029 36,399,625 RGD:1624291
RGD:1600115
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1624291
RGD:1600115
CRD-mediated mRNA stabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhx9 DExH-box helicase 9 JBrowse link 13 70,885,503 70,922,278 RGD:1624291
RGD:1600115
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 13 96,222,093 96,238,845 RGD:1600115
RGD:1624291
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 JBrowse link 10 83,774,178 83,823,323 RGD:1624291
RGD:1600115
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein JBrowse link 8 96,100,692 96,266,342 RGD:1600115
RGD:13792537
RGD:1624291
G Ybx1 Y box binding protein 1 JBrowse link 5 138,319,754 138,336,721 RGD:1624291
RGD:1600115
mRNA destabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cnot6l CCR4-NOT transcription complex, subunit 6-like JBrowse link 14 15,059,101 15,148,255 RGD:1624291
RGD:1600115
G Fto FTO, alpha-ketoglutarate dependent dioxygenase JBrowse link 19 16,774,549 17,115,098 RGD:1600115
RGD:1624291
G Gigyf2 GRB10 interacting GYF protein 2 JBrowse link 9 94,425,191 94,550,431 RGD:1624291
G Hnrnpr heterogeneous nuclear ribonucleoprotein R JBrowse link 5 154,668,194 154,699,967 RGD:9854643
G Mettl14 methyltransferase like 14 JBrowse link 2 227,566,811 227,583,047 RGD:1624291
RGD:1600115
G Mettl16 methyltransferase like 16 JBrowse link 10 61,626,595 61,682,947 RGD:1624291
G Mettl3 methyltransferase-like 3 JBrowse link 15 28,710,299 28,721,491 RGD:1624291
G Pum1 pumilio RNA-binding family member 1 JBrowse link 5 148,781,239 148,911,776 RGD:1624291
RGD:1600115
G Rbm24 RNA binding motif protein 24 JBrowse link 17 18,671,037 18,682,876 RGD:1624291
G Rock1 Rho-associated coiled-coil containing protein kinase 1 JBrowse link 18 1,273,490 1,390,790 RGD:1600115
RGD:1624291
G Rock2 Rho-associated coiled-coil containing protein kinase 2 JBrowse link 6 42,180,864 42,289,910 RGD:1624291
G Ythdf2 YTH N(6)-methyladenosine RNA binding protein 2 JBrowse link 5 150,364,490 150,390,173 RGD:1624291
RGD:1600115
G Ythdf3 YTH N(6)-methyladenosine RNA binding protein 3 JBrowse link 2 100,677,388 100,711,365 RGD:1624291
mRNA stabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 JBrowse link 4 155,386,367 155,414,034 RGD:1624291
RGD:1600115
G Axin2 axin 2 JBrowse link 10 97,212,483 97,238,824 RGD:1624291
RGD:1600115
G Cirbp cold inducible RNA binding protein JBrowse link 7 12,400,066 12,405,054 RGD:1624291
RGD:1600115
G Dicer1 dicer 1 ribonuclease III JBrowse link 6 128,388,084 128,453,234 RGD:1624291
G Dnd1 DND microRNA-mediated repression inhibitor 1 JBrowse link 18 29,608,588 29,611,212 RGD:13792537
G E2f1 E2F transcription factor 1 JBrowse link 3 150,062,895 150,073,721 RGD:1624291
RGD:1600115
G Elavl1 ELAV like RNA binding protein 1 JBrowse link 12 2,461,502 2,502,432 RGD:1624291
G Gdnf glial cell derived neurotrophic factor JBrowse link 2 56,884,181 56,912,964 RGD:1624291
RGD:1600115
G Hnrnpd heterogeneous nuclear ribonucleoprotein D JBrowse link 14 11,256,163 11,274,684 RGD:1357938
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 13 96,222,093 96,238,845 RGD:1624291
G Larp1 La ribonucleoprotein domain family, member 1 JBrowse link 10 43,435,738 43,501,186 RGD:1600115
RGD:1624291
G Mapkapk2 mitogen-activated protein kinase-activated protein kinase 2 JBrowse link 13 47,785,157 47,871,684 RGD:1624291
G Meioc meiosis specific with coiled-coil domain JBrowse link 10 90,622,954 90,641,883 RGD:1624291
RGD:13792537
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:10040969
G Noct nocturnin JBrowse link 2 140,286,661 140,306,869 RGD:1624291
RGD:1600115
G Qk quaking JBrowse link 1 50,983,647 51,050,692 RGD:10045995
G Rbm24 RNA binding motif protein 24 JBrowse link 17 18,671,037 18,682,876 RGD:1624291
G Rbm46 RNA binding motif protein 46 JBrowse link 2 181,828,931 181,874,223 RGD:1624291
RGD:1600115
G Slc11a1 solute carrier family 11 member 1 JBrowse link 9 81,655,590 81,666,697 RGD:1624291
RGD:1600115
G Tent5c terminal nucleotidyltransferase 5C JBrowse link 2 202,797,766 202,816,562 RGD:1600115
RGD:1624291
G Thrap3 thyroid hormone receptor associated protein 3 JBrowse link 5 144,178,248 144,221,318 RGD:1624291
RGD:1600115
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:1580563
G Vip vasoactive intestinal peptide JBrowse link 1 42,169,307 42,177,582 RGD:1600115
G Ybx2 Y box binding protein 2 JBrowse link 10 56,546,689 56,552,339 RGD:1624291
positive regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rbm24 RNA binding motif protein 24 JBrowse link 17 18,671,037 18,682,876 RGD:1624291
G Tent4a terminal nucleotidyltransferase 4A JBrowse link 1 36,400,056 36,433,238 RGD:1600115
RGD:1624291
G Tent4b terminal nucleotidyltransferase 4B JBrowse link 19 19,771,289 19,834,759 RGD:1600115
RGD:1624291
regulation of mitochondrial mRNA stability term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fastkd1 FAST kinase domains 1 JBrowse link 3 55,925,598 55,951,584 RGD:1624291
RGD:1600115
G Fastkd3 FAST kinase domains 3 JBrowse link 1 37,734,400 37,742,932 RGD:1624291
RGD:1600115
G Pde12 phosphodiesterase 12 JBrowse link 16 2,357,028 2,367,069 RGD:1600115
RGD:1624291
G Tbrg4 transforming growth factor beta regulator 4 JBrowse link 14 86,876,800 86,885,603 RGD:1624291
RGD:1600115
regulation of mRNA stability term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh5 alkB homolog 5, RNA demethylase JBrowse link 10 46,906,314 46,927,759 RGD:1600115
RGD:1624291
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 JBrowse link 15 27,849,943 27,852,083 RGD:1624291
RGD:1600115
G Brf1 BRF1, RNA polymerase III transcription initiation factor subunit JBrowse link 6 137,762,230 137,808,573 RGD:1624291
G Cacng7 calcium voltage-gated channel auxiliary subunit gamma 7 JBrowse link 1 64,374,547 64,405,380 RGD:13524564
G Calcr calcitonin receptor JBrowse link 4 28,627,439 28,702,559 RGD:1624291
RGD:1600115
G Carhsp1 calcium regulated heat stable protein 1 JBrowse link 10 7,041,510 7,055,107 RGD:1624291
RGD:13792537
RGD:1600115
G Csdc2 cold shock domain containing C2 JBrowse link 7 123,168,811 123,183,336 RGD:13792537
G Dcp2 decapping mRNA 2 JBrowse link 18 35,489,274 35,671,676 RGD:1624291
G Dhx36 DEAH-box helicase 36 JBrowse link 2 152,785,844 152,824,549 RGD:1600115
RGD:1624291
G Elavl4 ELAV like RNA binding protein 4 JBrowse link 5 130,001,387 130,144,557 RGD:9586719
G Fmr1 fragile X mental retardation 1 JBrowse link X 154,684,924 154,722,369 RGD:1624291
RGD:13792537
RGD:1600115
G Fxr1 FMR1 autosomal homolog 1 JBrowse link 2 120,529,716 120,570,356 RGD:13792537
G Fxr2 FMR1 autosomal homolog 2 JBrowse link 10 56,237,814 56,257,877 RGD:13792537
G Hnrnpd heterogeneous nuclear ribonucleoprotein D JBrowse link 14 11,256,163 11,274,684 RGD:1624291
G Khsrp KH-type splicing regulatory protein JBrowse link 9 10,013,795 10,023,670 RGD:1624291
RGD:1600115
G Pabpc4 poly(A) binding protein, cytoplasmic 4 JBrowse link 5 140,978,893 140,994,732 RGD:1624291
G Pcbp4 poly(rC) binding protein 4 JBrowse link 8 115,154,848 115,165,706 RGD:1624291
RGD:1600115
G Pcid2 PCI domain containing 2 JBrowse link 16 81,757,582 81,783,047 RGD:1624291
RGD:1600115
G Pum1 pumilio RNA-binding family member 1 JBrowse link 5 148,781,239 148,911,776 RGD:1624291
G Pum2 pumilio RNA-binding family member 2 JBrowse link 6 33,786,184 33,865,693 RGD:1624291
RGD:1600115
G Rbm24 RNA binding motif protein 24 JBrowse link 17 18,671,037 18,682,876 RGD:1624291
G Rc3h1 ring finger and CCCH-type domains 1 JBrowse link 13 78,723,028 78,794,663 RGD:1624291
G Rnasel ribonuclease L JBrowse link 13 71,188,712 71,202,636 RGD:1624291
G Samd4a sterile alpha motif domain containing 4A JBrowse link 15 23,666,543 23,879,067 RGD:1600115
RGD:13792537
G Samd4b sterile alpha motif domain containing 4B JBrowse link 1 85,324,017 85,362,266 RGD:13792537
G Scgb1a1 secretoglobin family 1A member 1 JBrowse link 1 225,279,698 225,283,246 RGD:1624291
RGD:1600115
G Vim vimentin JBrowse link 17 80,882,715 80,891,200 RGD:1600115
RGD:1624291
G Ythdf2 YTH N(6)-methyladenosine RNA binding protein 2 JBrowse link 5 150,364,490 150,390,173 RGD:1624291
G Zc3h14 zinc finger CCCH type containing 14 JBrowse link 6 122,729,834 122,767,462 RGD:13792537
RGD:1600115
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1600115
RGD:1624291
G Zfp36l1 zinc finger protein 36, C3H type-like 1 JBrowse link 6 103,308,032 103,313,074 RGD:11344953
RGD:1624291
RGD:1600115
RGD:11344945
G Zfp36l2 zinc finger protein 36, C3H type-like 2 JBrowse link 6 7,417,416 7,423,447 RGD:1624291
regulation of mRNA stability involved in cellular response to UV term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:1624291
regulation of mRNA stability involved in response to oxidative stress term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hnrnpm heterogeneous nuclear ribonucleoprotein M JBrowse link 7 18,516,253 18,554,536 RGD:13792537
G Myef2 myelin expression factor 2 JBrowse link 3 117,353,490 117,389,582 RGD:13792537
regulation of mRNA stability involved in response to stress term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 JBrowse link 10 83,774,178 83,823,323 RGD:1624291
RGD:1600115
RNA destabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dxo decapping exoribonuclease JBrowse link 20 4,517,307 4,519,391 RGD:1624291
RGD:1600115
G Tnfrsf1b TNF receptor superfamily member 1B JBrowse link 5 163,136,390 163,167,299 RGD:1624291
RGD:1600115
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1624291
RNA stabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Naf1 nuclear assembly factor 1 ribonucleoprotein JBrowse link 16 24,582,000 24,612,773 RGD:1624291
G Tent2 terminal nucleotidyltransferase 2 JBrowse link 2 22,746,290 22,798,252 RGD:1600115
RGD:1624291
telomerase RNA stabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhx36 DEAH-box helicase 36 JBrowse link 2 152,785,844 152,824,549 RGD:1624291
RGD:1600115
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:1624291
G Naf1 nuclear assembly factor 1 ribonucleoprotein JBrowse link 16 24,582,000 24,612,773 RGD:1624291
RGD:1600115
G Parn poly(A)-specific ribonuclease JBrowse link 10 1,309,724 1,461,123 RGD:1624291
RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17896
    biological regulation 12607
      regulation of biological quality 4125
        regulation of RNA stability 107
          RNA destabilization + 32
          RNA stabilization + 49
          regulation of mRNA stability + 99
          regulation of rRNA stability + 0
          regulation of tRNA stability + 0
Path 2
Term Annotations click to browse term
  biological_process 17896
    metabolic process 10654
      cellular metabolic process 9742
        cellular aromatic compound metabolic process 5076
          nucleobase-containing compound metabolic process 4872
            nucleic acid metabolic process 4428
              RNA metabolic process 3960
                RNA catabolic process 236
                  regulation of RNA stability 107
                    RNA destabilization + 32
                    RNA stabilization + 49
                    regulation of mRNA stability + 99
                    regulation of rRNA stability + 0
                    regulation of tRNA stability + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.