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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of transcription from RNA polymerase II promoter in response to stress
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Accession:GO:0043618 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).


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regulation of transcription from RNA polymerase II promoter in response to stress term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ino80 INO80 complex ATPase subunit JBrowse link 3 111,186,371 111,266,542 RGD:13792537
G Muc1 mucin 1, cell surface associated JBrowse link 2 188,543,137 188,547,874 RGD:1624291
negative regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Jun Jun proto-oncogene, AP-1 transcription factor subunit JBrowse link 5 114,011,184 114,014,277 RGD:1624291
RGD:1600115
G Nck1 NCK adaptor protein 1 JBrowse link 8 108,787,797 108,847,779 RGD:1624291
RGD:1600115
G Nck2 NCK adaptor protein 2 JBrowse link 9 50,246,767 50,373,307 RGD:1624291
RGD:1600115
G Ppp1r15a protein phosphatase 1, regulatory subunit 15A JBrowse link 1 101,511,899 101,515,043 RGD:1624291
G Tmbim6 transmembrane BAX inhibitor motif containing 6 JBrowse link 7 141,039,433 141,070,269 RGD:1624291
negative regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 JBrowse link 1 12,823,363 12,825,806 RGD:1624291
G Hif1an hypoxia inducible factor 1 subunit alpha inhibitor JBrowse link 1 264,309,214 264,319,269 RGD:1624291
RGD:13792537
G Sirt2 sirtuin 2 JBrowse link 1 86,948,866 86,971,954 RGD:1600115
RGD:1624291
G Vhl von Hippel-Lindau tumor suppressor JBrowse link 4 145,580,869 145,587,835 RGD:1624291
negative regulation of transcription from RNA polymerase II promoter in response to stress term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bag3 Bcl2-associated athanogene 3 JBrowse link 1 199,941,258 199,965,191 RGD:1624291
RGD:1600115
G Dnajb1 DnaJ heat shock protein family (Hsp40) member B1 JBrowse link 19 24,747,178 24,750,919 RGD:1624291
RGD:1600115
G Hspa1a heat shock protein family A (Hsp70) member 1A JBrowse link 20 4,875,834 4,881,751 RGD:1624291
RGD:1600115
G Hspa1b heat shock protein family A (Hsp70) member 1B JBrowse link 20 4,877,638 4,880,112 RGD:1624291
RGD:1600115
G Impact impact RWD domain protein JBrowse link 18 4,325,872 4,346,734 RGD:1624291
RGD:1600115
G LOC108348108 heat shock 70 kDa protein 1A JBrowse link 20 2,699,707 2,701,856 RGD:1600115
G Nfe2l1 nuclear factor, erythroid 2-like 1 JBrowse link 10 84,686,762 84,699,313 RGD:1624291
negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nedd4 NEDD4 E3 ubiquitin protein ligase JBrowse link 8 79,323,408 79,408,842 RGD:1624291
RGD:1600115
G Taf1 TATA-box binding protein associated factor 1 JBrowse link X 71,412,291 71,486,456 RGD:1624291
positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atf3 activating transcription factor 3 JBrowse link 13 109,817,892 109,849,632 RGD:1624291
RGD:1600115
G Atf4 activating transcription factor 4 JBrowse link 7 121,480,723 121,482,781 RGD:1624291
RGD:13792537
G Atf6 activating transcription factor 6 JBrowse link 13 89,053,457 89,242,531 RGD:1624291
RGD:1600115
G Atf6b activating transcription factor 6 beta JBrowse link 20 4,414,283 4,422,283 RGD:1624291
RGD:1600115
G Cebpb CCAAT/enhancer binding protein beta JBrowse link 3 164,424,502 164,425,933 RGD:1624291
RGD:1600115
G Creb3l1 cAMP responsive element binding protein 3-like 1 JBrowse link 3 80,892,433 80,933,283 RGD:1558627
RGD:1624291
G Creb3l3 cAMP responsive element binding protein 3-like 3 JBrowse link 7 11,490,852 11,499,287 RGD:1624291
RGD:1600115
G Ddit3 DNA-damage inducible transcript 3 JBrowse link 7 70,578,564 70,585,074 RGD:1599740
RGD:13792537
RGD:1624291
RGD:1600115
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 JBrowse link 4 98,648,513 98,709,695 RGD:1624291
G Mbtps2 membrane-bound transcription factor peptidase, site 2 JBrowse link X 40,258,933 40,309,047 RGD:1624291
RGD:13792537
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
RGD:1600115
positive regulation of transcription from RNA polymerase II promoter in response to heat stress term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsf1 heat shock transcription factor 1 JBrowse link 7 117,538,523 117,565,478 RGD:1624291
RGD:13792537
G Hsf2 heat shock transcription factor 2 JBrowse link 20 38,935,820 38,963,444 RGD:13792537
G Hsf4 heat shock transcription factor 4 JBrowse link 19 37,225,800 37,232,048 RGD:13792537
G Hsf5 heat shock transcription factor 5 JBrowse link 10 74,909,621 74,954,128 RGD:13792537
G Hsfy2 heat shock transcription factor, Y linked 2 JBrowse link 9 63,289,937 63,291,350 RGD:13792537
positive regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:1600115
RGD:1624291
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:1600115
RGD:1624291
G Notch1 notch receptor 1 JBrowse link 3 3,905,562 3,951,015 RGD:1624291
RGD:1600115
G Rbpj recombination signal binding protein for immunoglobulin kappa J region JBrowse link 14 59,657,738 59,865,427 RGD:1624291
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
RGD:1600115
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:1624291
positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atf4 activating transcription factor 4 JBrowse link 7 121,480,723 121,482,781 RGD:1624291
RGD:13792537
RGD:10047168
G Chd6 chromodomain helicase DNA binding protein 6 JBrowse link 3 156,937,746 157,099,328 RGD:1600115
RGD:1624291
G Mt3 metallothionein 3 JBrowse link 19 11,324,708 11,326,112 RGD:1624291
RGD:1600115
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:8655528
G Sesn2 sestrin 2 JBrowse link 5 150,684,891 150,703,846 RGD:1624291
RGD:1600115
positive regulation of transcription from RNA polymerase II promoter in response to stress term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gcn1 GCN1 activator of EIF2AK4 JBrowse link 12 46,728,684 46,789,696 RGD:1624291
RGD:1600115
G Klf2 Kruppel-like factor 2 JBrowse link 16 19,223,087 19,225,037 RGD:1624291
RGD:1600115
G Mapk7 mitogen-activated protein kinase 7 JBrowse link 10 47,768,592 47,775,130 RGD:1624291
G Muc1 mucin 1, cell surface associated JBrowse link 2 188,543,137 188,547,874 RGD:1624291
G Nfe2l1 nuclear factor, erythroid 2-like 1 JBrowse link 10 84,686,762 84,699,313 RGD:1624291
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:1624291
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
regulation of transcription from RNA polymerase II promoter in response to DNA damage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
RGD:1600115
regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bach1 BTB domain and CNC homolog 1 JBrowse link 11 27,364,913 27,398,713 RGD:1624291
RGD:1600115
G Egr1 early growth response 1 JBrowse link 18 27,657,903 27,660,101 RGD:1624291
RGD:1600115
G Stox1 storkhead box 1 JBrowse link 20 32,276,857 32,353,677 RGD:1624291
RGD:1600115
regulation of transcription from RNA polymerase II promoter in response to oxidative stress term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ankrd2 ankyrin repeat domain 2 JBrowse link 1 261,281,859 261,291,307 RGD:1624291
RGD:1600115
G Arnt aryl hydrocarbon receptor nuclear translocator JBrowse link 2 196,594,178 196,651,486 RGD:1624291
RGD:1600115
G Epas1 endothelial PAS domain protein 1 JBrowse link 6 10,306,508 10,385,239 RGD:1624291
RGD:1600115
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:2301848
RGD:1624291
RGD:1600115
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:8553479
G Sin3a SIN3 transcription regulator family member A JBrowse link 8 61,748,590 61,803,314 RGD:2306468
regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chek1 checkpoint kinase 1 JBrowse link 8 39,181,162 39,201,588 RGD:1624291
RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19245
    response to stimulus 10340
      response to stress 3906
        cellular response to stress 1915
          regulation of DNA-templated transcription in response to stress 60
            regulation of transcription from RNA polymerase II promoter in response to stress 56
              negative regulation of transcription from RNA polymerase II promoter in response to stress + 16
              positive regulation of transcription from RNA polymerase II promoter in response to stress + 29
              regulation of transcription from RNA polymerase II promoter in response to DNA damage 1
              regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage + 3
              regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance + 0
              regulation of transcription from RNA polymerase II promoter in response to biotin starvation 0
              regulation of transcription from RNA polymerase II promoter in response to hypoxia + 13
              regulation of transcription from RNA polymerase II promoter in response to iron ion starvation + 0
              regulation of transcription from RNA polymerase II promoter in response to osmotic stress + 0
              regulation of transcription from RNA polymerase II promoter in response to oxidative stress + 11
Path 2
Term Annotations click to browse term
  biological_process 19245
    metabolic process 11438
      cellular metabolic process 10461
        cellular aromatic compound metabolic process 5385
          nucleobase-containing compound metabolic process 5163
            nucleic acid metabolic process 4679
              RNA metabolic process 4191
                regulation of RNA metabolic process 3402
                  regulation of RNA biosynthetic process 3160
                    regulation of nucleic acid-templated transcription 3155
                      regulation of transcription, DNA-templated 3104
                        regulation of DNA-templated transcription in response to stress 60
                          regulation of transcription from RNA polymerase II promoter in response to stress 56
                            negative regulation of transcription from RNA polymerase II promoter in response to stress + 16
                            positive regulation of transcription from RNA polymerase II promoter in response to stress + 29
                            regulation of transcription from RNA polymerase II promoter in response to DNA damage 1
                            regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage + 3
                            regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance + 0
                            regulation of transcription from RNA polymerase II promoter in response to biotin starvation 0
                            regulation of transcription from RNA polymerase II promoter in response to hypoxia + 13
                            regulation of transcription from RNA polymerase II promoter in response to iron ion starvation + 0
                            regulation of transcription from RNA polymerase II promoter in response to osmotic stress + 0
                            regulation of transcription from RNA polymerase II promoter in response to oxidative stress + 11
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.