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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of DNA-templated transcription in response to stress
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Accession:GO:0043620 term browser browse the term
Definition:Modulation of the frequency, rate or extent of transcription from a DNA template as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
Synonyms:exact_synonym: regulation of DNA-dependent transcription in response to stress


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regulation of DNA-templated transcription in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCLAF1 BCL2 associated transcription factor 1 IMP (PMID:17938203) UniProtKB PMID:17938203 NCBI chr 6:136,256,627...136,289,846
Ensembl chr 6:136,256,627...136,289,851
JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit IMP (PMID:26649771) UniProtKB PMID:26649771 NCBI chr11:65,653,601...65,662,946
Ensembl chr11:65,653,597...65,663,090
JBrowse link
G RGS14 regulator of G protein signaling 14 ISS UniProtKB GO_REF:0000024 NCBI chr 5:177,357,672...177,372,601
Ensembl chr 5:177,357,924...177,372,596
JBrowse link
G RPS6KA1 ribosomal protein S6 kinase A1 TAS (PMID:18813292) UniProtKB PMID:18813292 NCBI chr 1:26,529,761...26,575,028
Ensembl chr 1:26,529,761...26,575,030
JBrowse link
G RPS6KA3 ribosomal protein S6 kinase A3 TAS (PMID:18813292) UniProtKB PMID:18813292 NCBI chr  X:20,149,911...20,267,514
Ensembl chr  X:20,149,911...20,267,519
JBrowse link
G TCIM transcriptional and immune response regulator IDA (PMID:17603013) UniProtKB PMID:17603013 NCBI chr 8:40,153,482...40,155,310
Ensembl chr 8:40,153,482...40,155,310
JBrowse link
negative regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G JUN Jun proto-oncogene, AP-1 transcription factor subunit IMP (PMID:21113145) ParkinsonsUK-UCL PMID:21113145 NCBI chr 1:58,780,791...58,784,047
Ensembl chr 1:58,780,791...58,784,047
JBrowse link
G NCK1 NCK adaptor protein 1 IDA (PMID:16835242) ParkinsonsUK-UCL PMID:16835242 NCBI chr 3:136,862,208...136,951,606
Ensembl chr 3:136,862,208...136,951,606
JBrowse link
G NCK2 NCK adaptor protein 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:105,744,649...105,894,274
Ensembl chr 2:105,744,912...105,894,274
JBrowse link
G PPP1R15A protein phosphatase 1 regulatory subunit 15A ISO (MGI:MGI:5605960|PMID:11381086) ParkinsonsUK-UCL PMID:11381086 MGI:MGI:5605960 NCBI chr19:48,872,392...48,876,062
Ensembl chr19:48,872,421...48,876,058
JBrowse link
G TMBIM6 transmembrane BAX inhibitor motif containing 6 IEA Ensembl GO_REF:0000107 NCBI chr12:49,741,557...49,764,934
Ensembl chr12:49,707,725...49,764,934
JBrowse link
negative regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 IDA (PMID:22735262) BHF-UCL PMID:22735262 NCBI chr 6:139,371,807...139,374,648
Ensembl chr 6:139,371,807...139,374,648
JBrowse link
G HIF1AN hypoxia inducible factor 1 subunit alpha inhibitor IDA
IBA
(PMID:11641274)
(PMID:21873635)
UniProtKB
GO_Central
PMID:11641274, PMID:21873635 NCBI chr10:100,535,921...100,559,998
Ensembl chr10:100,529,072...100,559,998
JBrowse link
G SIRT2 sirtuin 2 IMP (PMID:24681946) UniProtKB PMID:24681946 NCBI chr19:38,878,555...38,899,733
Ensembl chr19:38,878,555...38,899,862
JBrowse link
G VHL von Hippel-Lindau tumor suppressor IDA (PMID:11641274) UniProtKB PMID:11641274 NCBI chr 3:10,141,778...10,153,667
Ensembl chr 3:10,141,008...10,152,220
Ensembl chr 3:10,141,008...10,152,220
JBrowse link
negative regulation of transcription from RNA polymerase II promoter in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAG3 BAG cochaperone 3 IMP (PMID:26159920) UniProtKB PMID:26159920 NCBI chr10:119,651,380...119,677,819
Ensembl chr10:119,651,370...119,677,819
Ensembl chr10:119,651,370...119,677,819
JBrowse link
G DNAJB1 DnaJ heat shock protein family (Hsp40) member B1 IDA (PMID:9499401) UniProtKB PMID:9499401 NCBI chr19:14,514,769...14,530,597
Ensembl chr19:14,514,769...14,529,770
JBrowse link
G HSPA1A heat shock protein family A (Hsp70) member 1A IDA (PMID:9499401) UniProtKB PMID:9499401 NCBI chr 6:31,815,543...31,817,942
Ensembl chr 6:31,815,543...31,817,946
JBrowse link
G HSPA1B heat shock protein family A (Hsp70) member 1B IDA (PMID:9499401) UniProtKB PMID:9499401 NCBI chr 6:31,827,738...31,830,254
Ensembl chr 6:31,827,738...31,830,254
JBrowse link
G IMPACT impact RWD domain protein ISS UniProtKB GO_REF:0000024 NCBI chr18:24,426,670...24,453,531
Ensembl chr18:24,426,634...24,453,531
JBrowse link
G NFE2L1 nuclear factor, erythroid 2 like 1 ISS (PMID:29149604) UniProt PMID:29149604 NCBI chr17:48,048,359...48,061,545
Ensembl chr17:48,048,329...48,061,545
JBrowse link
negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEDD4 NEDD4 E3 ubiquitin protein ligase IMP (PMID:17996703) BHF-UCL PMID:17996703 NCBI chr15:55,826,917...55,993,612
Ensembl chr15:55,826,922...55,993,746
JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF4 activating transcription factor 4 TAS (PMID:14685163) ParkinsonsUK-UCL PMID:14685163 NCBI chr22:39,514,494...39,522,686
Ensembl chr22:39,519,672...39,522,683
Ensembl chr22:39,519,672...39,522,683
JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF3 activating transcription factor 3 IDA (PMID:24939851) ParkinsonsUK-UCL PMID:24939851 NCBI chr 1:212,565,407...212,620,777
Ensembl chr 1:212,565,334...212,620,777
JBrowse link
G ATF4 activating transcription factor 4 IMP
IBA
IDA
(PMID:21113145)
(PMID:21873635)
(PMID:12871976)
ParkinsonsUK-UCL
GO_Central
PMID:12871976, PMID:21113145, PMID:21873635 NCBI chr22:39,514,494...39,522,686
Ensembl chr22:39,519,672...39,522,683
Ensembl chr22:39,519,672...39,522,683
JBrowse link
G ATF6 activating transcription factor 6 IDA
TAS
(PMID:11163209), (PMID:11256944), (PMID:16469704)
(PMID:22013210)
ParkinsonsUK-UCL PMID:11163209, PMID:11256944, PMID:16469704, PMID:22013210 NCBI chr 1:161,766,320...161,964,070
Ensembl chr 1:161,766,320...161,964,070
JBrowse link
G ATF6B activating transcription factor 6 beta IDA
TAS
(PMID:11256944)
(PMID:22013210)
ParkinsonsUK-UCL PMID:11256944, PMID:22013210 NCBI chr 6:32,115,264...32,128,246
Ensembl chr 6:32,115,264...32,128,253
JBrowse link
G CEBPB CCAAT enhancer binding protein beta IDA (PMID:15775988) ParkinsonsUK-UCL PMID:15775988 NCBI chr20:50,190,583...50,192,690
Ensembl chr20:50,190,830...50,192,668
JBrowse link
G CREB3L1 cAMP responsive element binding protein 3 like 1 ISS ParkinsonsUK-UCL GO_REF:0000024 NCBI chr11:46,277,661...46,321,409
Ensembl chr11:46,277,662...46,321,409
JBrowse link
G CREB3L3 cAMP responsive element binding protein 3 like 3 IDA (PMID:16469704) ParkinsonsUK-UCL PMID:16469704 NCBI chr19:4,153,631...4,173,054
Ensembl chr19:4,153,631...4,173,054
JBrowse link
G DDIT3 DNA damage inducible transcript 3 IMP
IBA
IDA
ISS
IGI
(PMID:22761832)
(PMID:21873635)
(PMID:15322075), (PMID:24939851)
(PMID:15775988)
ParkinsonsUK-UCL
GO_Central
PMID:15322075, PMID:15775988, PMID:21873635, PMID:22761832, PMID:24939851 GO_REF:0000024 NCBI chr12:57,516,588...57,520,517
Ensembl chr12:57,516,588...57,521,737
JBrowse link
G EIF2AK3 eukaryotic translation initiation factor 2 alpha kinase 3 ISO (MGI:MGI:3722921|PMID:14729979) ParkinsonsUK-UCL PMID:14729979 MGI:MGI:3722921 NCBI chr 2:88,556,741...88,627,464
Ensembl chr 2:88,556,741...88,627,464
JBrowse link
G HSPA5 heat shock protein family A (Hsp70) member 5 TAS (PMID:14685163) ParkinsonsUK-UCL PMID:14685163 NCBI chr 9:125,234,853...125,241,343
Ensembl chr 9:125,234,853...125,241,343
JBrowse link
G MBTPS2 membrane bound transcription factor peptidase, site 2 IGI
IBA
(PMID:11163209)
(PMID:21873635)
ParkinsonsUK-UCL
GO_Central
PMID:11163209, PMID:21873635 NCBI chr  X:21,839,617...21,885,423
Ensembl chr  X:21,839,617...21,885,423
JBrowse link
G TP53 tumor protein p53 ISS ParkinsonsUK-UCL GO_REF:0000024 NCBI chr17:7,668,402...7,687,550
Ensembl chr17:7,661,779...7,687,538
Ensembl chr17:7,661,779...7,687,538
JBrowse link
G XBP1 X-box binding protein 1 TAS (PMID:22013210) ParkinsonsUK-UCL PMID:22013210 NCBI chr22:28,794,560...28,800,569
Ensembl chr22:28,794,555...28,800,597
JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to heat stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HSF1 heat shock transcription factor 1 IDA (PMID:10747973), (PMID:12659875), (PMID:12665592), (PMID:15016915), (PMID:25963659), (PMID:26754925), (PMID:7760831), (PMID:9499401) UniProtKB PMID:7760831, PMID:9499401, PMID:10747973, PMID:12659875, PMID:12665592, PMID:15016915, PMID:25963659, PMID:26754925 NCBI chr 8:144,291,603...144,314,720
Ensembl chr 8:144,291,591...144,314,720
JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HIF1A hypoxia inducible factor 1 subunit alpha IDA
IMP
(PMID:22735262)
(PMID:19652095), (PMID:24681946)
BHF-UCL PMID:19652095, PMID:22735262, PMID:24681946 NCBI chr14:61,695,513...61,748,259
Ensembl chr14:61,695,513...61,748,259
JBrowse link
G NFE2L2 nuclear factor, erythroid 2 like 2 IMP (PMID:24844779) BHF-UCL PMID:24844779 NCBI chr 2:177,230,303...177,265,131
Ensembl chr 2:177,227,595...177,392,697
JBrowse link
G NOTCH1 notch receptor 1 ISS UniProtKB GO_REF:0000024 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048
JBrowse link
G RBPJ recombination signal binding protein for immunoglobulin kappa J region IDA (PMID:23303788) UniProtKB PMID:23303788 NCBI chr 4:26,163,458...26,435,131
Ensembl chr 4:26,163,455...26,435,131
JBrowse link
G TP53 tumor protein p53 IEA Ensembl GO_REF:0000107 NCBI chr17:7,668,402...7,687,550
Ensembl chr17:7,661,779...7,687,538
Ensembl chr17:7,661,779...7,687,538
JBrowse link
G VEGFA vascular endothelial growth factor A IMP (PMID:19652095) BHF-UCL PMID:19652095 NCBI chr 6:43,770,209...43,786,487
Ensembl chr 6:43,770,184...43,786,487
JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF4 activating transcription factor 4 IMP
IBA
ISS
(PMID:21113145)
(PMID:21873635)
(PMID:23392669)
ParkinsonsUK-UCL
GO_Central
PMID:21113145, PMID:21873635, PMID:23392669 NCBI chr22:39,514,494...39,522,686
Ensembl chr22:39,519,672...39,522,683
Ensembl chr22:39,519,672...39,522,683
JBrowse link
G CHD6 chromodomain helicase DNA binding protein 6 IMP (PMID:16314513) UniProtKB PMID:16314513 NCBI chr20:41,402,083...41,618,377
Ensembl chr20:41,402,083...41,618,384
JBrowse link
G MT3 metallothionein 3 IDA (PMID:18554677) UniProtKB PMID:18554677 NCBI chr16:56,589,528...56,591,085
Ensembl chr16:56,589,074...56,591,088
JBrowse link
G NFE2L2 nuclear factor, erythroid 2 like 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:177,230,303...177,265,131
Ensembl chr 2:177,227,595...177,392,697
JBrowse link
G SESN2 sestrin 2 IMP (PMID:23274085) UniProtKB PMID:23274085 NCBI chr 1:28,259,452...28,282,491
Ensembl chr 1:28,259,518...28,282,491
JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF4 activating transcription factor 4 IC (PMID:25681212) ParkinsonsUK-UCL PMID:25681212 NCBI chr22:39,514,494...39,522,686
Ensembl chr22:39,519,672...39,522,683
Ensembl chr22:39,519,672...39,522,683
JBrowse link
G GCN1 GCN1 activator of EIF2AK4 ISS UniProtKB GO_REF:0000024 NCBI chr12:120,127,202...120,194,715
Ensembl chr12:120,127,202...120,194,715
JBrowse link
G KLF2 Kruppel like factor 2 IMP (PMID:23043106) BHF-UCL PMID:23043106 NCBI chr19:16,324,826...16,328,685
Ensembl chr19:16,324,817...16,327,874
Ensembl chr19:16,324,817...16,327,874
JBrowse link
G MAPK7 mitogen-activated protein kinase 7 IMP (PMID:23043106) BHF-UCL PMID:23043106 NCBI chr17:19,377,721...19,383,544
Ensembl chr17:19,377,721...19,383,544
JBrowse link
G MUC1 mucin 1, cell surface associated IDA (PMID:15710329) BHF-UCL PMID:15710329 NCBI chr 1:155,185,824...155,192,915
Ensembl chr 1:155,185,824...155,192,916
JBrowse link
G NFE2L1 nuclear factor, erythroid 2 like 1 ISS (PMID:10601325), (PMID:11342101), (PMID:20385086) UniProt PMID:10601325, PMID:11342101, PMID:20385086 NCBI chr17:48,048,359...48,061,545
Ensembl chr17:48,048,329...48,061,545
JBrowse link
G NFE2L2 nuclear factor, erythroid 2 like 2 IMP (PMID:23043106) BHF-UCL PMID:23043106 NCBI chr 2:177,230,303...177,265,131
Ensembl chr 2:177,227,595...177,392,697
JBrowse link
G TP53 tumor protein p53 IDA (PMID:30089260) ARUK-UCL PMID:30089260 NCBI chr17:7,668,402...7,687,550
Ensembl chr17:7,661,779...7,687,538
Ensembl chr17:7,661,779...7,687,538
JBrowse link
regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF3 activating transcription factor 3 TAS (PMID:14685163) ParkinsonsUK-UCL PMID:14685163 NCBI chr 1:212,565,407...212,620,777
Ensembl chr 1:212,565,334...212,620,777
JBrowse link
regulation of transcription from RNA polymerase II promoter in response to DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TP53 tumor protein p53 IDA (PMID:30089260) ARUK-UCL PMID:30089260 NCBI chr17:7,668,402...7,687,550
Ensembl chr17:7,661,779...7,687,538
Ensembl chr17:7,661,779...7,687,538
JBrowse link
regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARNT aryl hydrocarbon receptor nuclear translocator TAS Reactome Reactome:R-HSA-1234174 NCBI chr 1:150,809,713...150,876,737
Ensembl chr 1:150,809,713...150,876,708
JBrowse link
G BACH1 BTB domain and CNC homolog 1 IDA (PMID:12511571) UniProtKB PMID:12511571 NCBI chr21:29,298,922...29,361,894
Ensembl chr21:29,194,071...29,630,751
JBrowse link
G CA9 carbonic anhydrase 9 TAS Reactome Reactome:R-HSA-1234174 NCBI chr 9:35,673,809...35,681,159
Ensembl chr 9:35,673,918...35,681,159
JBrowse link
G CREBBP CREB binding protein TAS Reactome Reactome:R-HSA-1234174 NCBI chr16:3,725,054...3,880,727
Ensembl chr16:3,725,054...3,880,713
Ensembl chr16:3,725,054...3,880,713
JBrowse link
G CUL2 cullin 2 TAS Reactome Reactome:R-HSA-1234174 NCBI chr10:35,008,551...35,126,899
Ensembl chr10:35,008,551...35,090,642
JBrowse link
G EGLN1 egl-9 family hypoxia inducible factor 1 TAS Reactome Reactome:R-HSA-1234174 NCBI chr 1:231,363,756...231,422,332
Ensembl chr 1:231,363,751...231,422,287
JBrowse link
G EGLN2 egl-9 family hypoxia inducible factor 2 TAS Reactome Reactome:R-HSA-1234174 NCBI chr19:40,799,191...40,808,434
Ensembl chr19:40,798,996...40,808,434
JBrowse link
G EGLN3 egl-9 family hypoxia inducible factor 3 TAS Reactome Reactome:R-HSA-1234174 NCBI chr14:33,924,227...33,951,074
Ensembl chr14:33,924,227...34,462,774
JBrowse link
G EGR1 early growth response 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:138,465,479...138,469,303
Ensembl chr 5:138,465,479...138,469,303
JBrowse link
G ELOB elongin B TAS Reactome Reactome:R-HSA-1234174 NCBI chr16:2,771,414...2,777,280
Ensembl chr16:2,771,414...2,777,297
Ensembl chr16:2,771,414...2,777,297
JBrowse link
G ELOC elongin C TAS Reactome Reactome:R-HSA-1234174 NCBI chr 8:73,945,119...73,972,287
Ensembl chr 8:73,939,169...73,972,287
JBrowse link
G EP300 E1A binding protein p300 TAS Reactome Reactome:R-HSA-1234174 NCBI chr22:41,092,592...41,180,077
Ensembl chr22:41,092,592...41,180,077
JBrowse link
G EPAS1 endothelial PAS domain protein 1 TAS Reactome Reactome:R-HSA-1234174 NCBI chr 2:46,297,407...46,386,697
Ensembl chr 2:46,293,667...46,386,697
JBrowse link
G EPO erythropoietin TAS Reactome Reactome:R-HSA-1234174 NCBI chr 7:100,720,468...100,723,700
Ensembl chr 7:100,720,468...100,723,700
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha TAS Reactome Reactome:R-HSA-1234174 NCBI chr14:61,695,513...61,748,259
Ensembl chr14:61,695,513...61,748,259
JBrowse link
G HIF1AN hypoxia inducible factor 1 subunit alpha inhibitor TAS Reactome Reactome:R-HSA-1234174 NCBI chr10:100,535,921...100,559,998
Ensembl chr10:100,529,072...100,559,998
JBrowse link
G HIF3A hypoxia inducible factor 3 subunit alpha TAS Reactome Reactome:R-HSA-1234174 NCBI chr19:46,297,042...46,343,433
Ensembl chr19:46,297,046...46,343,433
JBrowse link
G HIGD1A HIG1 hypoxia inducible domain family member 1A TAS Reactome Reactome:R-HSA-1234174 NCBI chr 3:42,782,908...42,804,490
Ensembl chr 3:42,782,908...42,804,490
Ensembl chr 3:42,782,908...42,804,490
JBrowse link
G LIMD1 LIM domains containing 1 TAS Reactome Reactome:R-HSA-1234174 NCBI chr 3:45,594,105...45,686,341
Ensembl chr 3:45,555,394...45,686,341
JBrowse link
G PSMA1 proteasome 20S subunit alpha 1 TAS Reactome Reactome:R-HSA-1234174 NCBI chr11:14,504,876...14,643,662
Ensembl chr11:14,504,874...14,643,635
JBrowse link
G PSMA2 proteasome 20S subunit alpha 2 TAS Reactome Reactome:R-HSA-1234174 NCBI chr 7:42,916,861...42,932,174
Ensembl chr 7:42,909,273...42,932,174
Ensembl chr 7:42,909,273...42,932,174
JBrowse link
G PSMA3 proteasome 20S subunit alpha 3 TAS Reactome Reactome:R-HSA-1234174 NCBI chr14:58,244,843...58,272,004
Ensembl chr14:58,244,843...58,272,012
JBrowse link
G PSMA4 proteasome 20S subunit alpha 4 TAS Reactome Reactome:R-HSA-1234174 NCBI chr15:78,540,405...78,552,417
Ensembl chr15:78,540,405...78,552,417
JBrowse link
G PSMA5 proteasome 20S subunit alpha 5 TAS Reactome Reactome:R-HSA-1234174 NCBI chr 1:109,399,042...109,426,448
Ensembl chr 1:109,399,042...109,426,448
JBrowse link
G PSMA6 proteasome 20S subunit alpha 6 TAS Reactome Reactome:R-HSA-1234174 NCBI chr14:35,278,558...35,317,493
Ensembl chr14:35,278,633...35,317,493
JBrowse link
G PSMA7 proteasome 20S subunit alpha 7 TAS Reactome Reactome:R-HSA-1234174 NCBI chr20:62,136,733...62,143,394
Ensembl chr20:62,136,733...62,143,440
JBrowse link
G PSMA8 proteasome 20S subunit alpha 8 TAS Reactome Reactome:R-HSA-1234174 NCBI chr18:26,133,869...26,193,355
Ensembl chr18:26,133,852...26,193,355
JBrowse link
G PSMB1 proteasome 20S subunit beta 1 TAS Reactome Reactome:R-HSA-1234174 NCBI chr 6:170,535,120...170,553,307
Ensembl chr 6:170,535,120...170,553,307
JBrowse link
G PSMB10 proteasome 20S subunit beta 10 TAS Reactome Reactome:R-HSA-1234174 NCBI chr16:67,934,506...67,936,850
Ensembl chr16:67,934,506...67,936,864
JBrowse link
G PSMB11 proteasome subunit beta 11 TAS Reactome Reactome:R-HSA-1234174 NCBI chr14:23,042,212...23,044,060
Ensembl chr14:23,042,212...23,044,060
JBrowse link
G PSMB2 proteasome 20S subunit beta 2 TAS Reactome Reactome:R-HSA-1234174 NCBI chr 1:35,599,541...35,641,526
Ensembl chr 1:35,599,541...35,641,526
JBrowse link
G PSMB3 proteasome 20S subunit beta 3 TAS Reactome Reactome:R-HSA-1234174 NCBI chr17:38,752,741...38,764,225
Ensembl chr17:38,752,741...38,764,225
JBrowse link
G PSMB4 proteasome 20S subunit beta 4 TAS Reactome Reactome:R-HSA-1234174 NCBI chr 1:151,399,573...151,401,937
Ensembl chr 1:151,399,560...151,401,937
JBrowse link
G PSMB5 proteasome 20S subunit beta 5 TAS Reactome Reactome:R-HSA-1234174 NCBI chr14:23,025,851...23,035,220
Ensembl chr14:23,016,543...23,035,230
JBrowse link
G PSMB6 proteasome 20S subunit beta 6 TAS Reactome Reactome:R-HSA-1234174 NCBI chr17:4,796,164...4,798,495
Ensembl chr17:4,796,144...4,798,502
JBrowse link
G PSMB7 proteasome 20S subunit beta 7 TAS Reactome Reactome:R-HSA-1234174 NCBI chr 9:124,353,465...124,415,442
Ensembl chr 9:124,353,465...124,415,444
JBrowse link
G PSMB8 proteasome 20S subunit beta 8 TAS Reactome Reactome:R-HSA-1234174 NCBI chr 6:32,840,717...32,844,679
Ensembl chr 6:32,840,717...32,844,679
JBrowse link
G PSMB9 proteasome 20S subunit beta 9 TAS Reactome Reactome:R-HSA-1234174 NCBI chr 6:32,854,192...32,859,851
Ensembl chr 6:32,844,136...32,859,851
JBrowse link
G PSMC1 proteasome 26S subunit, ATPase 1 TAS Reactome Reactome:R-HSA-1234174 NCBI chr14:90,256,553...90,275,429
Ensembl chr14:90,256,527...90,275,429
JBrowse link
G PSMC2 proteasome 26S subunit, ATPase 2 TAS Reactome Reactome:R-HSA-1234174 NCBI chr 7:103,344,405...103,369,395
Ensembl chr 7:103,344,254...103,369,395
JBrowse link
G PSMC3 proteasome 26S subunit, ATPase 3 TAS Reactome Reactome:R-HSA-1234174 NCBI chr11:47,418,775...47,426,473
Ensembl chr11:47,418,769...47,426,473
JBrowse link
G PSMC4 proteasome 26S subunit, ATPase 4 TAS Reactome Reactome:R-HSA-1234174 NCBI chr19:39,971,150...39,981,764
Ensembl chr19:39,971,165...39,981,764
JBrowse link
G PSMC5 proteasome 26S subunit, ATPase 5 TAS Reactome Reactome:R-HSA-1234174 NCBI chr17:63,827,431...63,832,019
Ensembl chr17:63,827,152...63,832,026
JBrowse link
G PSMC6 proteasome 26S subunit, ATPase 6 TAS Reactome Reactome:R-HSA-1234174 NCBI chr14:52,707,163...52,728,590
Ensembl chr14:52,707,178...52,728,590
JBrowse link
G PSMD1 proteasome 26S subunit, non-ATPase 1 TAS Reactome Reactome:R-HSA-1234174 NCBI chr 2:231,056,867...231,172,827
Ensembl chr 2:231,056,864...231,172,827
JBrowse link
G PSMD10 proteasome 26S subunit, non-ATPase 10 TAS Reactome Reactome:R-HSA-1234174 NCBI chr  X:108,084,207...108,091,542
Ensembl chr  X:108,084,207...108,091,549
JBrowse link
G PSMD11 proteasome 26S subunit, non-ATPase 11 TAS Reactome Reactome:R-HSA-1234174 NCBI chr17:32,444,510...32,483,319
Ensembl chr17:32,444,379...32,483,319
JBrowse link
G PSMD12 proteasome 26S subunit, non-ATPase 12 TAS Reactome Reactome:R-HSA-1234174 NCBI chr17:67,337,916...67,366,598
Ensembl chr17:67,337,916...67,366,605
JBrowse link
G PSMD13 proteasome 26S subunit, non-ATPase 13 TAS Reactome Reactome:R-HSA-1234174 NCBI chr11:236,972...252,984
Ensembl chr11:236,966...252,984
JBrowse link
G PSMD14 proteasome 26S subunit, non-ATPase 14 TAS Reactome Reactome:R-HSA-1234174 NCBI chr 2:161,308,425...161,411,717
Ensembl chr 2:161,308,425...161,411,717
JBrowse link
G PSMD2 proteasome 26S subunit, non-ATPase 2 TAS Reactome Reactome:R-HSA-1234174 NCBI chr 3:184,299,241...184,309,050
Ensembl chr 3:184,299,198...184,309,050
JBrowse link
G PSMD3 proteasome 26S subunit, non-ATPase 3 TAS Reactome Reactome:R-HSA-1234174 NCBI chr17:39,980,807...39,997,959
Ensembl chr17:39,980,807...39,997,959
JBrowse link
G PSMD4 proteasome 26S subunit, non-ATPase 4 TAS Reactome Reactome:R-HSA-1234174 NCBI chr 1:151,254,734...151,267,479
Ensembl chr 1:151,254,703...151,267,479
Ensembl chr 1:151,254,703...151,267,479
JBrowse link
G PSMD5 proteasome 26S subunit, non-ATPase 5 TAS Reactome Reactome:R-HSA-1234174 NCBI chr 9:120,816,053...120,842,922
Ensembl chr 9:120,815,496...120,842,951
JBrowse link
G PSMD6 proteasome 26S subunit, non-ATPase 6 TAS Reactome Reactome:R-HSA-1234174 NCBI chr 3:64,010,551...64,024,007
Ensembl chr 3:64,010,550...64,024,010
Ensembl chr 3:64,010,550...64,024,010
JBrowse link
G PSMD7 proteasome 26S subunit, non-ATPase 7 TAS Reactome Reactome:R-HSA-1234174 NCBI chr16:74,296,814...74,306,288
Ensembl chr16:74,296,814...74,306,288
JBrowse link
G PSMD8 proteasome 26S subunit, non-ATPase 8 TAS Reactome Reactome:R-HSA-1234174 NCBI chr19:38,374,571...38,383,824
Ensembl chr19:38,374,536...38,383,824
JBrowse link
G PSMD9 proteasome 26S subunit, non-ATPase 9 TAS Reactome Reactome:R-HSA-1234174 NCBI chr12:121,888,790...121,918,297
Ensembl chr12:121,888,809...121,921,470
Ensembl chr12:121,888,809...121,921,470
JBrowse link
G PSME1 proteasome activator subunit 1 TAS Reactome Reactome:R-HSA-1234174 NCBI chr14:24,136,194...24,138,962
Ensembl chr14:24,136,163...24,138,967
JBrowse link
G PSME2 proteasome activator subunit 2 TAS Reactome Reactome:R-HSA-1234174 NCBI chr14:24,143,365...24,146,646
Ensembl chr14:24,143,362...24,147,570
JBrowse link
G PSME3 proteasome activator subunit 3 TAS Reactome Reactome:R-HSA-1234174 NCBI chr17:42,833,397...42,843,760
Ensembl chr17:42,824,385...42,843,760
JBrowse link
G PSME4 proteasome activator subunit 4 TAS Reactome Reactome:R-HSA-1234174 NCBI chr 2:53,864,069...53,970,993
Ensembl chr 2:53,864,069...53,970,993
JBrowse link
G PSMF1 proteasome inhibitor subunit 1 TAS Reactome Reactome:R-HSA-1234174 NCBI chr20:1,113,263...1,172,246
Ensembl chr20:1,113,240...1,189,415
JBrowse link
G RBX1 ring-box 1 TAS Reactome Reactome:R-HSA-1234174 NCBI chr22:40,951,378...40,973,309
Ensembl chr22:40,951,347...40,973,309
JBrowse link
G RPS27A ribosomal protein S27a TAS Reactome Reactome:R-HSA-1234174 NCBI chr 2:55,231,903...55,235,853
Ensembl chr 2:55,231,903...55,235,853
JBrowse link
G SEM1 SEM1 26S proteasome complex subunit TAS Reactome Reactome:R-HSA-1234174 NCBI chr 7:96,481,626...96,709,846
Ensembl chr 7:96,481,626...96,709,891
JBrowse link
G STOX1 storkhead box 1 IMP (PMID:24738702) UniProtKB PMID:24738702 NCBI chr10:68,827,531...68,895,942
Ensembl chr10:68,827,531...68,895,432
JBrowse link
G UBA52 ubiquitin A-52 residue ribosomal protein fusion product 1 TAS Reactome Reactome:R-HSA-1234174 NCBI chr19:18,563,766...18,577,550
Ensembl chr19:18,571,730...18,577,550
JBrowse link
G UBB ubiquitin B TAS Reactome Reactome:R-HSA-1234174 NCBI chr17:16,380,779...16,382,745
Ensembl chr17:16,380,798...16,382,745
JBrowse link
G UBC ubiquitin C TAS Reactome Reactome:R-HSA-1234174 NCBI chr12:124,911,646...124,914,650
Ensembl chr12:124,911,604...124,917,368
JBrowse link
G VEGFA vascular endothelial growth factor A TAS Reactome Reactome:R-HSA-1234174 NCBI chr 6:43,770,209...43,786,487
Ensembl chr 6:43,770,184...43,786,487
JBrowse link
G VHL von Hippel-Lindau tumor suppressor TAS Reactome Reactome:R-HSA-1234174 NCBI chr 3:10,141,778...10,153,667
Ensembl chr 3:10,141,008...10,152,220
Ensembl chr 3:10,141,008...10,152,220
JBrowse link
regulation of transcription from RNA polymerase II promoter in response to oxidative stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKRD2 ankyrin repeat domain 2 IDA (PMID:24434510) MGI PMID:24434510 NCBI chr10:97,572,441...97,583,884
Ensembl chr10:97,572,499...97,583,884
JBrowse link
G ARNT aryl hydrocarbon receptor nuclear translocator IDA (PMID:8089148) BHF-UCL PMID:8089148 NCBI chr 1:150,809,713...150,876,737
Ensembl chr 1:150,809,713...150,876,708
JBrowse link
G EPAS1 endothelial PAS domain protein 1 NOT IEA
ISO
(MGI:MGI:2667513|PMID:12832481) Ensembl
MGI
PMID:12832481 GO_REF:0000107, MGI:MGI:2667513 NCBI chr 2:46,297,407...46,386,697
Ensembl chr 2:46,293,667...46,386,697
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha IDA (PMID:8089148), (PMID:8387214) BHF-UCL PMID:8089148, PMID:8387214 NCBI chr14:61,695,513...61,748,259
Ensembl chr14:61,695,513...61,748,259
JBrowse link
G HMOX1 heme oxygenase 1 ISS BHF-UCL GO_REF:0000024 NCBI chr22:35,381,096...35,394,207
Ensembl chr22:35,380,361...35,394,207
JBrowse link
G SIN3A SIN3 transcription regulator family member A IEA Ensembl GO_REF:0000107 NCBI chr15:75,369,379...75,455,819
Ensembl chr15:75,369,379...75,455,842
JBrowse link
regulation of transcription from RNA polymerase II promoter in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDIT3 DNA damage inducible transcript 3 TAS (PMID:19816510) BHF-UCL PMID:19816510 NCBI chr12:57,516,588...57,520,517
Ensembl chr12:57,516,588...57,521,737
JBrowse link
G INO80 INO80 complex ATPase subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:40,978,880...41,117,778
Ensembl chr15:40,978,880...41,116,280
JBrowse link
G MUC1 mucin 1, cell surface associated IDA (PMID:15710329) BHF-UCL PMID:15710329 NCBI chr 1:155,185,824...155,192,915
Ensembl chr 1:155,185,824...155,192,916
JBrowse link
regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHEK1 checkpoint kinase 1 IEA
ISS
Ensembl
UniProtKB
GO_REF:0000024, GO_REF:0000107 NCBI chr11:125,624,910...125,676,256
Ensembl chr11:125,625,665...125,676,255
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18650
    cellular process 17668
      cellular response to stimulus 8399
        cellular response to stress 2294
          regulation of DNA-templated transcription in response to stress 121
            regulation of transcription from RNA polymerase II promoter in response to stress + 115
Path 2
Term Annotations click to browse term
  biological_process 18650
    metabolic process 12284
      cellular metabolic process 11267
        cellular aromatic compound metabolic process 6226
          nucleobase-containing compound metabolic process 5975
            nucleic acid metabolic process 5426
              RNA metabolic process 4898
                RNA biosynthetic process 3900
                  nucleic acid-templated transcription 3885
                    transcription, DNA-templated 3835
                      regulation of transcription, DNA-templated 3636
                        regulation of DNA-templated transcription in response to stress 121
                          regulation of transcription from RNA polymerase II promoter in response to stress + 115
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.