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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of DNA-templated transcription in response to stress
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Accession:GO:0043620 term browser browse the term
Definition:Modulation of the frequency, rate or extent of transcription from a DNA template as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
Synonyms:exact_synonym: regulation of DNA-dependent transcription in response to stress


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regulation of DNA-templated transcription in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bclaf1 BCL2-associated transcription factor 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr10:20,310,512...20,342,644
Ensembl chr10:20,312,469...20,344,613
JBrowse link
G Jmy junction-mediating and regulatory protein TAS (MGI:MGI:1891484|PMID:10518217) UniProtKB PMID:10518217 MGI:MGI:1891484 NCBI chr13:93,430,097...93,499,808
Ensembl chr13:93,430,101...93,499,808
JBrowse link
G Rela v-rel reticuloendotheliosis viral oncogene homolog A (avian) ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr19:5,637,442...5,648,134
Ensembl chr19:5,637,483...5,648,130
JBrowse link
G Rgs14 regulator of G-protein signaling 14 IDA (MGI:MGI:5284798|PMID:15520006) UniProtKB PMID:15520006 MGI:MGI:5284798 NCBI chr13:55,369,732...55,384,687
Ensembl chr13:55,369,732...55,384,687
JBrowse link
G Tcim transcriptional and immune response regulator ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 8:24,437,172...24,438,946
Ensembl chr 8:24,437,180...24,438,984
JBrowse link
negative regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jun jun proto-oncogene ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:95,049,036...95,052,222
Ensembl chr 4:95,049,034...95,052,222
JBrowse link
G Nck1 non-catalytic region of tyrosine kinase adaptor protein 1 IGI
ISO
(MGI:MGI:5613475|PMID:16835242) ParkinsonsUK-UCL
MGI
PMID:16835242 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:5613475 NCBI chr 9:100,494,302...100,546,134
Ensembl chr 9:100,492,293...100,546,134
JBrowse link
G Nck2 non-catalytic region of tyrosine kinase adaptor protein 2 IGI (MGI:MGI:5613475|PMID:16835242) ParkinsonsUK-UCL PMID:16835242 MGI:MGI:5613475 NCBI chr 1:43,445,483...43,570,518
Ensembl chr 1:43,444,579...43,570,515
JBrowse link
G Ppp1r15a protein phosphatase 1, regulatory subunit 15A IDA (MGI:MGI:5605960|PMID:11381086) ParkinsonsUK-UCL PMID:11381086 MGI:MGI:5605960 NCBI chr 7:45,522,917...45,526,268
Ensembl chr 7:45,522,916...45,526,268
JBrowse link
G Tmbim6 transmembrane BAX inhibitor motif containing 6 IMP (MGI:MGI:3840374|PMID:19328063) ParkinsonsUK-UCL PMID:19328063 MGI:MGI:3840374 NCBI chr15:99,392,947...99,410,049
Ensembl chr15:99,392,882...99,410,049
JBrowse link
negative regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr10:17,723,228...17,725,674
Ensembl chr10:17,723,218...17,725,674
JBrowse link
G Hif1an hypoxia-inducible factor 1, alpha subunit inhibitor ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr19:44,562,854...44,576,274
Ensembl chr19:44,562,850...44,576,274
JBrowse link
G Sirt2 sirtuin 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:28,766,752...28,788,665
Ensembl chr 7:28,766,735...28,788,661
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 6:113,623,994...113,631,634
Ensembl chr 6:113,623,959...113,631,633
JBrowse link
negative regulation of transcription from RNA polymerase II promoter in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag3 BCL2-associated athanogene 3 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:128,523,583...128,546,981
Ensembl chr 7:128,523,616...128,546,981
JBrowse link
G Dnajb1 DnaJ heat shock protein family (Hsp40) member B1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 8:83,608,175...83,612,653
Ensembl chr 8:83,608,193...83,612,653
JBrowse link
G Hspa1a heat shock protein 1A ISO (PMID:9499401) UniProtKB PMID:9499401 NCBI chr17:34,969,359...34,972,156
Ensembl chr17:34,969,190...34,972,156
JBrowse link
G Hspa1b heat shock protein 1B ISO (PMID:9499401) UniProtKB PMID:9499401 NCBI chr17:34,956,429...34,959,238
Ensembl chr17:34,956,436...34,959,238
JBrowse link
G Impact impact, RWD domain protein IDA (MGI:MGI:5576818|PMID:24333428) UniProtKB PMID:24333428 MGI:MGI:5576818 NCBI chr18:12,954,690...12,992,950
Ensembl chr18:12,955,852...12,992,950
JBrowse link
G Nfe2l1 nuclear factor, erythroid derived 2,-like 1 IDA (MGI:MGI:6101031|PMID:29149604) UniProt PMID:29149604 MGI:MGI:6101031 NCBI chr11:96,817,414...96,829,968
Ensembl chr11:96,817,414...96,829,968
JBrowse link
negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nedd4 neural precursor cell expressed, developmentally down-regulated 4 ISO (PMID:17996703) BHF-UCL PMID:17996703 NCBI chr 9:72,662,331...72,749,851
Ensembl chr 9:72,662,346...72,749,852
JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf3 activating transcription factor 3 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 1:191,170,296...191,183,333
Ensembl chr 1:191,170,296...191,218,039
JBrowse link
G Atf4 activating transcription factor 4 ISO
IMP
(MGI:MGI:5433837|PMID:21113145), (MGI:MGI:5613480|PMID:12871976) MGI
ParkinsonsUK-UCL
PMID:12871976, PMID:21113145 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:5433837, MGI:MGI:5613480 NCBI chr15:80,255,184...80,257,545
Ensembl chr15:80,255,184...80,257,541
JBrowse link
G Atf6 activating transcription factor 6 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 1:170,704,457...170,868,585
Ensembl chr 1:170,704,674...170,867,771
JBrowse link
G Atf6b activating transcription factor 6 beta ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr17:34,647,146...34,655,074
Ensembl chr17:34,647,146...34,655,074
JBrowse link
G Cebpb CCAAT/enhancer binding protein (C/EBP), beta ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 2:167,688,915...167,690,432
Ensembl chr 2:167,688,915...167,690,418
JBrowse link
G Creb3l1 cAMP responsive element binding protein 3-like 1 IDA
ISO
(MGI:MGI:5616321|PMID:15665855) ParkinsonsUK-UCL
RGD
PMID:15665855 GO_REF:0000096, MGI:MGI:4417868, MGI:MGI:5616321 NCBI chr 2:91,982,328...92,024,170
Ensembl chr 2:91,982,328...92,024,502
JBrowse link
G Creb3l3 cAMP responsive element binding protein 3-like 3 IMP
ISO
(MGI:MGI:5616319|PMID:16469704) ParkinsonsUK-UCL
MGI
PMID:16469704 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:5616319 NCBI chr10:81,084,329...81,098,872
Ensembl chr10:81,084,324...81,098,874
JBrowse link
G Ddit3 DNA-damage inducible transcript 3 NAS
IBA
ISO
IMP
(MGI:MGI:3525819|PMID:15601821)
(MGI:MGI:6201960|PMID:21873635)
ParkinsonsUK-UCL
GO_Central
MGI
RGD
PMID:15601821, PMID:21873635 GO_REF:0000096, MGI:MGI:3525819, MGI:MGI:4417868, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr10:127,290,793...127,296,291
Ensembl chr10:127,290,774...127,296,288
Ensembl chr10:127,290,774...127,296,288
JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 IMP (MGI:MGI:3722921|PMID:14729979) ParkinsonsUK-UCL PMID:14729979 MGI:MGI:3722921 NCBI chr 6:70,844,484...70,905,241
Ensembl chr 6:70,844,515...70,905,245
JBrowse link
G Mbtps2 membrane-bound transcription factor peptidase, site 2 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr  X:157,547,822...157,598,715
Ensembl chr  X:157,535,371...157,598,715
JBrowse link
G Trp53 transformation related protein 53 IMP (MGI:MGI:5621265|PMID:16407291) ParkinsonsUK-UCL PMID:16407291 MGI:MGI:5621265 NCBI chr11:69,580,348...69,591,873
Ensembl chr11:69,580,359...69,591,873
JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to heat stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsf1 heat shock factor 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr15:76,477,362...76,501,155
Ensembl chr15:76,477,422...76,501,913
JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hif1a hypoxia inducible factor 1, alpha subunit ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr12:73,901,324...73,947,554
Ensembl chr12:73,901,375...73,947,530
JBrowse link
G Nfe2l2 nuclear factor, erythroid derived 2, like 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 2:75,675,513...75,704,663
Ensembl chr 2:75,675,513...75,704,641
JBrowse link
G Notch1 notch 1 IDA (MGI:MGI:5319604|PMID:18299578) UniProtKB PMID:18299578 MGI:MGI:5319604 NCBI chr 2:26,457,902...26,503,822
Ensembl chr 2:26,457,903...26,516,663
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 5:53,555,779...53,657,445
Ensembl chr 5:53,466,152...53,657,362
JBrowse link
G Trp53 transformation related protein 53 IMP (MGI:MGI:4867601|PMID:20935145) MGI PMID:20935145 MGI:MGI:4867601 NCBI chr11:69,580,348...69,591,873
Ensembl chr11:69,580,359...69,591,873
JBrowse link
G Vegfa vascular endothelial growth factor A ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr17:46,016,993...46,032,377
Ensembl chr17:46,016,993...46,032,369
JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf4 activating transcription factor 4 ISO MGI
RGD
GO_REF:0000096, MGI:MGI:4417868, MGI:MGI:4834177 NCBI chr15:80,255,184...80,257,545
Ensembl chr15:80,255,184...80,257,541
JBrowse link
G Chd6 chromodomain helicase DNA binding protein 6 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 2:160,946,978...161,109,086
Ensembl chr 2:160,946,978...161,109,075
JBrowse link
G Mt3 metallothionein 3 ISO (PMID:18554677) UniProtKB PMID:18554677 NCBI chr 8:94,152,607...94,154,148
Ensembl chr 8:94,152,607...94,154,146
JBrowse link
G Nfe2l2 nuclear factor, erythroid derived 2, like 2 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr 2:75,675,513...75,704,663
Ensembl chr 2:75,675,513...75,704,641
JBrowse link
G Sesn2 sestrin 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:132,492,804...132,510,456
Ensembl chr 4:132,492,032...132,510,501
JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcn1 GCN1 activator of EIF2AK4 IDA (MGI:MGI:5576818|PMID:24333428) UniProtKB PMID:24333428 MGI:MGI:5576818 NCBI chr 5:115,565,117...115,622,654
Ensembl chr 5:115,565,254...115,622,654
JBrowse link
G Klf2 Kruppel-like factor 2 (lung) ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 8:72,319,062...72,321,654
Ensembl chr 8:72,319,033...72,321,656
JBrowse link
G Mapk7 mitogen-activated protein kinase 7 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr11:61,488,812...61,494,267
Ensembl chr11:61,488,812...61,494,406
JBrowse link
G Muc1 mucin 1, transmembrane ISO (PMID:15710329) BHF-UCL PMID:15710329 NCBI chr 3:89,229,056...89,233,381
Ensembl chr 3:89,229,057...89,233,381
JBrowse link
G Nfe2l1 nuclear factor, erythroid derived 2,-like 1 IDA (MGI:MGI:4820675|PMID:20385086), (MGI:MGI:6107583|PMID:11342101), (MGI:MGI:6316451|PMID:10601325) UniProt PMID:10601325, PMID:11342101, PMID:20385086 MGI:MGI:4820675, MGI:MGI:6107583, MGI:MGI:6316451 NCBI chr11:96,817,414...96,829,968
Ensembl chr11:96,817,414...96,829,968
JBrowse link
G Nfe2l2 nuclear factor, erythroid derived 2, like 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 2:75,675,513...75,704,663
Ensembl chr 2:75,675,513...75,704,641
JBrowse link
G Trp53 transformation related protein 53 IDA
ISO
ISS
(MGI:MGI:5883206|PMID:22262176)
(MGI:MGI:6316512|PMID:30089260)
CAFA
MGI
ARUK-UCL
PMID:22262176, PMID:30089260 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:5883206, MGI:MGI:6316512 NCBI chr11:69,580,348...69,591,873
Ensembl chr11:69,580,359...69,591,873
JBrowse link
regulation of transcription from RNA polymerase II promoter in response to DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trp53 transformation related protein 53 ISS
ISO
(MGI:MGI:6316512|PMID:30089260) ARUK-UCL
MGI
PMID:30089260 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6316512 NCBI chr11:69,580,348...69,591,873
Ensembl chr11:69,580,359...69,591,873
JBrowse link
regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bach1 BTB and CNC homology 1, basic leucine zipper transcription factor 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr16:87,698,954...87,733,346
Ensembl chr16:87,698,945...87,733,346
JBrowse link
G Egr1 early growth response 1 IDA (MGI:MGI:3847400|PMID:18323529) MGI PMID:18323529 MGI:MGI:3847400 NCBI chr18:34,861,207...34,864,956
Ensembl chr18:34,859,823...34,864,984
JBrowse link
G Stox1 storkhead box 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr10:62,659,043...62,726,094
Ensembl chr10:62,659,043...62,726,128
JBrowse link
regulation of transcription from RNA polymerase II promoter in response to oxidative stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd2 ankyrin repeat domain 2 (stretch responsive muscle) ISO MGI GO_REF:0000008, MGI:MGI:2154458 NCBI chr19:42,035,917...42,045,111
Ensembl chr19:42,036,000...42,045,110
JBrowse link
G Arnt aryl hydrocarbon receptor nuclear translocator ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 3:95,434,367...95,497,240
Ensembl chr 3:95,434,388...95,497,240
JBrowse link
G Cd36 CD36 molecule IC (MGI:MGI:4850200|PMID:20978343) BHF-UCL PMID:20978343 MGI:MGI:4850200 NCBI chr 5:17,781,690...17,888,959
Ensembl chr 5:17,781,690...17,888,801
JBrowse link
G Epas1 endothelial PAS domain protein 1 NOT IMP
IGI
IDA
(MGI:MGI:3703197|PMID:17284606)
(MGI:MGI:2667513|PMID:12832481)
(MGI:MGI:2681387|PMID:14608355)
MGI PMID:12832481, PMID:14608355, PMID:17284606 MGI:MGI:2667513, MGI:MGI:2681387, MGI:MGI:3703197 NCBI chr17:86,753,864...86,833,410
Ensembl chr17:86,753,700...86,833,410
JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit IMP
ISO
(MGI:MGI:2667513|PMID:12832481) MGI
RGD
PMID:12832481 GO_REF:0000096, MGI:MGI:2667513, MGI:MGI:4417868, MGI:MGI:4834177 NCBI chr12:73,901,324...73,947,554
Ensembl chr12:73,901,375...73,947,530
JBrowse link
G Hmox1 heme oxygenase 1 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr 8:75,093,618...75,100,593
Ensembl chr 8:75,093,621...75,100,589
JBrowse link
G Sin3a transcriptional regulator, SIN3A (yeast) ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr 9:57,071,991...57,128,368
Ensembl chr 9:57,072,040...57,128,366
JBrowse link
regulation of transcription from RNA polymerase II promoter in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ino80 INO80 complex subunit IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 2:119,373,042...119,478,685
Ensembl chr 2:119,373,042...119,477,687
JBrowse link
G Muc1 mucin 1, transmembrane ISO (PMID:15710329) BHF-UCL PMID:15710329 NCBI chr 3:89,229,056...89,233,381
Ensembl chr 3:89,229,057...89,233,381
JBrowse link
regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chek1 checkpoint kinase 1 IMP (MGI:MGI:5294291|PMID:18243098) UniProtKB PMID:18243098 MGI:MGI:5294291 NCBI chr 9:36,708,482...36,726,658
Ensembl chr 9:36,708,482...36,727,065
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23366
    cellular process 17362
      cellular response to stimulus 8374
        cellular response to stress 1972
          regulation of DNA-templated transcription in response to stress 56
            regulation of transcription from RNA polymerase II promoter in response to stress + 51
Path 2
Term Annotations click to browse term
  biological_process 23366
    metabolic process 11278
      cellular metabolic process 10054
        cellular aromatic compound metabolic process 5414
          nucleobase-containing compound metabolic process 5182
            nucleic acid metabolic process 4744
              RNA metabolic process 4257
                RNA biosynthetic process 3362
                  nucleic acid-templated transcription 3351
                    transcription, DNA-templated 3338
                      regulation of transcription, DNA-templated 3240
                        regulation of DNA-templated transcription in response to stress 56
                          regulation of transcription from RNA polymerase II promoter in response to stress + 51
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.