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ONTOLOGY REPORT - ANNOTATIONS


Term:histone H3 acetylation
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Accession:GO:0043966 term browser browse the term
Definition:The modification of histone H3 by the addition of an acetyl group.


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histone H3 acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brca2 BRCA2, DNA repair associated JBrowse link 12 503,660 544,754 RGD:1600115
RGD:1624291
G Brd1 bromodomain containing 1 JBrowse link 7 129,676,119 129,724,303 RGD:1624291
G Brpf1 bromodomain and PHD finger containing, 1 JBrowse link 4 145,264,445 145,280,943 RGD:1624291
G Brpf3 bromodomain and PHD finger containing, 3 JBrowse link 20 6,047,800 6,086,099 RGD:1624291
G Dr1 down-regulator of transcription 1 JBrowse link 14 2,463,651 2,475,004 RGD:1624291
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:7327209
G Ing4 inhibitor of growth family, member 4 JBrowse link 4 157,554,729 157,563,353 RGD:1624291
G Ing5 inhibitor of growth family, member 5 JBrowse link 9 100,932,932 100,950,233 RGD:1624291
G Irf4 interferon regulatory factor 4 JBrowse link 17 34,886,746 34,905,191 RGD:1624291
G Jade1 jade family PHD finger 1 JBrowse link 2 128,461,147 128,514,298 RGD:1624291
RGD:13792537
G Jade2 jade family PHD finger 2 JBrowse link 10 37,269,132 37,315,638 RGD:1624291
RGD:13792537
G Jade3 jade family PHD finger 3 JBrowse link X 1,885,927 2,038,639 RGD:1624291
RGD:13792537
G Kat14 lysine acetyltransferase 14 JBrowse link 3 138,508,899 138,549,437 RGD:1624291
G Kat2a lysine acetyltransferase 2A JBrowse link 10 88,611,586 88,619,558 RGD:1624291
G Kat2b lysine acetyltransferase 2B JBrowse link 9 4,440,982 4,492,949 RGD:1624291
G Kat6a lysine acetyltransferase 6A JBrowse link 16 73,942,669 74,020,750 RGD:1624291
RGD:13792537
RGD:1600115
G Kat6b lysine acetyltransferase 6B JBrowse link 15 2,811,933 2,966,833 RGD:1624291
RGD:13792537
G Kat7 lysine acetyltransferase 7 JBrowse link 10 83,095,067 83,128,342 RGD:1624291
RGD:1600115
G Lef1 lymphoid enhancer binding factor 1 JBrowse link 2 236,232,115 236,345,061 RGD:1600115
RGD:1624291
G LOC690283 similar to TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor JBrowse link 1 60,105,788 60,108,103 RGD:13792537
G Map3k7 mitogen activated protein kinase kinase kinase 7 JBrowse link 5 47,183,142 47,244,424 RGD:1624291
G Mbip MAP3K12 binding inhibitory protein 1 JBrowse link 6 77,226,439 77,243,696 RGD:1624291
G Mcm3ap minichromosome maintenance complex component 3 associated protein JBrowse link 20 12,879,304 12,917,069 RGD:1600115
G Myod1 myogenic differentiation 1 JBrowse link 1 102,396,538 102,399,248 RGD:1600115
RGD:1624291
G Myog myogenin JBrowse link 13 51,126,459 51,129,048 RGD:1624291
G Naa60 N(alpha)-acetyltransferase 60, NatF catalytic subunit JBrowse link 10 11,881,635 11,902,139 RGD:13792537
G Per1 period circadian regulator 1 JBrowse link 10 55,681,761 55,696,557 RGD:1600115
RGD:1624291
G Pole3 DNA polymerase epsilon 3, accessory subunit JBrowse link 5 78,380,813 78,384,047 RGD:1624291
G Sgf29 SAGA complex associated factor 29 JBrowse link 1 198,066,974 198,100,494 RGD:1624291
RGD:13792537
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:1624291
G Spi1 Spi-1 proto-oncogene JBrowse link 3 79,918,127 79,937,708 RGD:1624291
G Supt3h SPT3 homolog, SAGA and STAGA complex component JBrowse link 9 18,249,565 18,604,814 RGD:1624291
RGD:1600115
G Supt7l SPT7 like, STAGA complex subunit gamma JBrowse link 6 26,241,672 26,251,810 RGD:1624291
RGD:13792537
G Tada1 transcriptional adaptor 1 JBrowse link 13 84,588,587 84,602,542 RGD:1600115
RGD:1624291
G Tada2a transcriptional adaptor 2A JBrowse link 10 71,393,701 71,441,435 RGD:1624291
G Tada3 transcriptional adaptor 3 JBrowse link 4 145,318,417 145,330,291 RGD:1624291
RGD:13792537
G Taf10 TATA-box binding protein associated factor 10 JBrowse link 1 170,585,160 170,586,428 RGD:1624291
G Taf12 TATA-box binding protein associated factor 12 JBrowse link 5 150,459,701 150,476,521 RGD:1624291
G Taf5 TATA-box binding protein associated factor 5 JBrowse link 1 266,844,480 266,859,965 RGD:13792537
G Taf5l TATA-box binding protein associated factor 5 like JBrowse link 19 56,781,854 56,801,005 RGD:1624291
RGD:13792537
G Taf6l TATA-box binding protein associated factor 6 like JBrowse link 1 224,974,238 224,986,819 RGD:1624291
G Taf9 TATA-box binding protein associated factor 9 JBrowse link 2 30,664,407 30,668,414 RGD:1624291
G Tcf3 transcription factor 3 JBrowse link 7 12,146,642 12,168,400 RGD:1624291
G Trim16 tripartite motif-containing 16 JBrowse link 10 49,231,660 49,254,653 RGD:1624291
G Wdr5 WD repeat domain 5 JBrowse link 3 6,061,892 6,080,724 RGD:1624291
G Yeats2 YEATS domain containing 2 JBrowse link 11 84,330,064 84,595,296 RGD:1624291
histone H3-K14 acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brd1 bromodomain containing 1 JBrowse link 7 129,676,119 129,724,303 RGD:1624291
RGD:13792537
G Brd4 bromodomain containing 4 JBrowse link 7 14,222,101 14,303,055 RGD:1624291
G Brpf1 bromodomain and PHD finger containing, 1 JBrowse link 4 145,264,445 145,280,943 RGD:1624291
RGD:13792537
G Brpf3 bromodomain and PHD finger containing, 3 JBrowse link 20 6,047,800 6,086,099 RGD:1624291
RGD:13792537
G Ing5 inhibitor of growth family, member 5 JBrowse link 9 100,932,932 100,950,233 RGD:1624291
G Kat2a lysine acetyltransferase 2A JBrowse link 10 88,611,586 88,619,558 RGD:1624291
G Kat7 lysine acetyltransferase 7 JBrowse link 10 83,095,067 83,128,342 RGD:1600115
RGD:1624291
G Meaf6 MYST/Esa1-associated factor 6 JBrowse link 5 143,081,298 143,103,225 RGD:1624291
RGD:13792537
G Mllt10 MLLT10, histone lysine methyltransferase DOT1L cofactor JBrowse link 17 84,847,660 84,981,134 RGD:13792537
G Phf14 PHD finger protein 14 JBrowse link 4 38,241,189 38,420,199 RGD:13792537
histone H3-K23 acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brd1 bromodomain containing 1 JBrowse link 7 129,676,119 129,724,303 RGD:1600115
G Brpf1 bromodomain and PHD finger containing, 1 JBrowse link 4 145,264,445 145,280,943 RGD:1624291
G Brpf3 bromodomain and PHD finger containing, 3 JBrowse link 20 6,047,800 6,086,099 RGD:1600115
G Meaf6 MYST/Esa1-associated factor 6 JBrowse link 5 143,081,298 143,103,225 RGD:1600115
G Mllt10 MLLT10, histone lysine methyltransferase DOT1L cofactor JBrowse link 17 84,847,660 84,981,134 RGD:1600115
G Phf14 PHD finger protein 14 JBrowse link 4 38,241,189 38,420,199 RGD:1600115
histone H3-K4 acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ldb1 LIM domain binding 1 JBrowse link 1 265,772,729 265,798,442 RGD:1624291
histone H3-K9 acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Crtc2 CREB regulated transcription coactivator 2 JBrowse link 2 189,615,928 189,625,646 RGD:1624291
G Kat2b lysine acetyltransferase 2B JBrowse link 9 4,440,982 4,492,949 RGD:1624291
negative regulation of histone H3-K14 acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:1624291
RGD:1600115
negative regulation of histone H3-K27 acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sin3a SIN3 transcription regulator family member A JBrowse link 8 61,748,590 61,803,314 RGD:1624291
negative regulation of histone H3-K9 acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hdac8 histone deacetylase 8 JBrowse link X 72,163,777 72,370,058 RGD:13208813
G Zfp451 zinc finger protein 451 JBrowse link 9 38,395,464 38,451,585 RGD:1624291
positive regulation of histone H3-K14 acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gata3 GATA binding protein 3 JBrowse link 17 72,419,752 72,452,043 RGD:1624291
G Kat2b lysine acetyltransferase 2B JBrowse link 9 4,440,982 4,492,949 RGD:7364756
G Nap1l2 nucleosome assembly protein 1-like 2 JBrowse link X 73,997,274 73,999,677 RGD:1624291
G Piwil2 piwi-like RNA-mediated gene silencing 2 JBrowse link 15 52,037,693 52,116,277 RGD:1624291
G Wbp2 WW domain binding protein 2 JBrowse link 10 104,629,563 104,637,906 RGD:1600115
RGD:1624291
positive regulation of histone H3-K27 acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lif LIF, interleukin 6 family cytokine JBrowse link 14 84,482,652 84,500,574 RGD:1624291
RGD:1600115
positive regulation of histone H3-K9 acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brca1 BRCA1, DNA repair associated JBrowse link 10 89,394,821 89,455,093 RGD:1624291
RGD:1600115
G Gata3 GATA binding protein 3 JBrowse link 17 72,419,752 72,452,043 RGD:1624291
G Kat2b lysine acetyltransferase 2B JBrowse link 9 4,440,982 4,492,949 RGD:7364756
G Nap1l2 nucleosome assembly protein 1-like 2 JBrowse link X 73,997,274 73,999,677 RGD:1624291
G Pih1d1 PIH1 domain containing 1 JBrowse link 1 101,151,240 101,156,806 RGD:1624291
G Piwil2 piwi-like RNA-mediated gene silencing 2 JBrowse link 15 52,037,693 52,116,277 RGD:1624291
G Smad4 SMAD family member 4 JBrowse link 18 69,626,682 69,657,373 RGD:1624291
RGD:1600115
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 20 13,679,955 13,702,821 RGD:1624291
G Sphk2 sphingosine kinase 2 JBrowse link 1 101,692,972 101,700,604 RGD:1624291
regulation of histone H3-K14 acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kmt2a lysine methyltransferase 2A JBrowse link 8 49,110,407 49,185,872 RGD:1624291
regulation of histone H3-K27 acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kmt2a lysine methyltransferase 2A JBrowse link 8 49,110,407 49,185,872 RGD:1624291
regulation of histone H3-K9 acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Camk1 calcium/calmodulin-dependent protein kinase I JBrowse link 4 145,289,300 145,300,146 RGD:1624291
G Chek1 checkpoint kinase 1 JBrowse link 8 39,181,162 39,201,588 RGD:1624291
RGD:1600115
G Hdac5 histone deacetylase 5 JBrowse link 10 90,140,183 90,169,853 RGD:1624291
G Kmt2a lysine methyltransferase 2A JBrowse link 8 49,110,407 49,185,872 RGD:1624291
G Rapgef3 Rap guanine nucleotide exchange factor 3 JBrowse link 7 139,232,263 139,254,668 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19676
    cellular process 18449
      cellular component organization or biogenesis 6664
        cellular component organization 6424
          chromatin organization 830
            covalent chromatin modification 506
              histone modification 491
                histone acetylation 172
                  histone H3 acetylation 71
                    histone H3-K14 acetylation + 17
                    histone H3-K18 acetylation + 0
                    histone H3-K23 acetylation 6
                    histone H3-K27 acetylation + 3
                    histone H3-K36 acetylation 0
                    histone H3-K4 acetylation + 1
                    histone H3-K56 acetylation + 0
                    histone H3-K79 acetylation 0
                    histone H3-K9 acetylation + 17
Path 2
Term Annotations click to browse term
  biological_process 19676
    metabolic process 11952
      organic substance metabolic process 11358
        macromolecule metabolic process 9814
          macromolecule modification 4099
            protein modification process 3895
              cellular protein modification process 3895
                peptidyl-amino acid modification 1308
                  peptidyl-lysine modification 411
                    peptidyl-lysine acetylation 189
                      internal peptidyl-lysine acetylation 178
                        histone acetylation 172
                          histone H3 acetylation 71
                            histone H3-K14 acetylation + 17
                            histone H3-K18 acetylation + 0
                            histone H3-K23 acetylation 6
                            histone H3-K27 acetylation + 3
                            histone H3-K36 acetylation 0
                            histone H3-K4 acetylation + 1
                            histone H3-K56 acetylation + 0
                            histone H3-K79 acetylation 0
                            histone H3-K9 acetylation + 17
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.